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Scalable data mining for processing complex and large-scale data

Research Project

Project/Area Number 24700140
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research InstitutionTokyo Institute of Technology

Principal Investigator

Tabei Yasuo  東京工業大学, 情報理工学(系)研究科, 東工大特別研究員 (20589824)

Project Period (FY) 2012-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2013: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2012: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsデータマイニング / 機械学習 / 類似検索 / ケモインフォマティクス / 簡潔データ構造 / 類似度検索 / アルゴリズム / ビッグデータ / 国際情報交換
Outline of Final Research Achievements

We developed scalable similarity search and machine learning techniques for processing complex and large-scale data in this project. For example, we developed a large-scale similarity search for network data and scalable learning method for training linear classifiers. Papers on the developed methods was accepted to premier conferences. In addition, softwares implementing the developed methods are publicly available and have been used by researchers and engineers in all over the world.

Report

(5 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (12 results)

All 2013 2012 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (4 results) Remarks (4 results)

  • [Journal Article] Scalable prediction of compound-protein interactions using minwise hashing2013

    • Author(s)
      Y.Tabei and Y.Yamanishi
    • Journal Title

      BMC Systems Biology

      Volume: 7 Issue: Suppl 6 Pages: S3-S3

    • DOI

      10.1186/1752-0509-7-s6-s3

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers2012

    • Author(s)
      Yasuo Tabei, Edouard Pauwels, Veronique Stoven, Kazuhiro Takemoto, Yoshihiro Yamanishi
    • Journal Title

      Bioinrmatics

      Volume: 28 Issue: 18 Pages: 487-494

    • DOI

      10.1093/bioinformatics/bts412

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches2012

    • Author(s)
      Yasuo Tabei
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 7534 Pages: 201-213

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Variable-Length Codes for Space-Efficient Grammar-Based Compression2012

    • Author(s)
      Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
    • Journal Title

      Lecture Notes in Computer Science

      Volume: 7608 Pages: 398-410

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] Succinct Interval-Splitting Tree for Scalable Similarity Search of Compound-Protein Pairs with Property Constraints2013

    • Author(s)
      Y.Tabei, A.Kishimoto, M.Kotera, Y.Yamanishi
    • Organizer
      19th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD2013)
    • Place of Presentation
      シカゴ
    • Related Report
      2013 Research-status Report
  • [Presentation] Identification of chemogenomic features from drug-target interaction networks using interpretable classifiers2012

    • Author(s)
      Yasuo Tabei, Edouard Pauwels, Veronique Stoven, Kazuhiro Takemoto, Yoshihiro Yamanishi
    • Organizer
      11th European Conference on Computational Biology (ECCB)
    • Place of Presentation
      Basel, Switzerland
    • Related Report
      2012 Research-status Report
  • [Presentation] Succinct Multibit Tree: Compact Representation of Multibit Trees by Using Succinct Data Structures in Chemical Fingerprint Searches2012

    • Author(s)
      Yasuo Tabei
    • Organizer
      12th Workshop on Algorithms in Bioinformatics (WABI)
    • Place of Presentation
      Ljubljana, Slovenia
    • Related Report
      2012 Research-status Report
  • [Presentation] Variable-Length Codes for Space-Efficient Grammar-Based Compression2012

    • Author(s)
      Yoshimasa Takabatake, Yasuo Tabei, Hiroshi Sakamoto
    • Organizer
      19th International Symposium on String Processing and Information Retrieval (SPIRE)
    • Place of Presentation
      Cartagena, Colombia
    • Related Report
      2012 Research-status Report
  • [Remarks] MinwiseのC++による実装

    • URL

      https://sites.google.com/site/interactminhash/

    • Related Report
      2015 Annual Research Report
  • [Remarks] コンパクトなデータ表現による機械学習法の実装

    • URL

      https://sites.google.com/site/interactminhash/

    • Related Report
      2014 Research-status Report
  • [Remarks] Succinct Multibit Tree

    • URL

      https://code.google.com/p/smbt/

    • Related Report
      2012 Research-status Report
  • [Remarks] olca-plus-plus

    • URL

      https://code.google.com/p/olca-plus-plus/

    • Related Report
      2012 Research-status Report

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Published: 2013-05-31   Modified: 2019-07-29  

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