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Clinical marker hunting with informatics and mass spectrometry

Research Project

Project/Area Number 24790548
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Laboratory medicine
Research InstitutionChiba University

Principal Investigator

NISHIMURA Motoi  千葉大学, 医学部附属病院, 講師 (80400969)

Project Period (FY) 2012-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2014: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2013: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2012: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords臨床検査 / Immuno-MS / 免疫沈降 / 抗体 / セロタイピング / 質量分析 / 国際情報交換
Outline of Final Research Achievements

Motoi Nishimura and colleagues combined mass spectrometry and immunoprecipitation (so-called Immuno-MS) using widely-used clinical test immunoassay reagents. As an example, we have shown successful ApoE serotyping using Immuno-MS.
ApoE serotyping is based on the correlation between ApoE genotype and isoform; it is therefore possible to determine the genotype from the blood ApoE isoform combination. Serotyping ApoE using mass spectrometry promises highly accurate results while requiring minimal amounts of blood and reagents, resulting in lower costs, which suggest that proteomic-based ApoE serotyping may eventually become a routine clinical laboratory test.

Report

(4 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • 2012 Research-status Report
  • Research Products

    (29 results)

All 2014 2013 2012 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results,  Open Access: 3 results,  Acknowledgement Compliant: 1 results) Presentation (15 results) (of which Invited: 1 results) Remarks (1 results)

  • [Journal Article] High-throughput Screening of Extended RAS Mutations Based on High-Resolution Melting Analysis for prediction of anti-EGFR Treatment Efficacy in Colorectal Carcinoma.2014

    • Author(s)
      Ishige T, Itoga S, Sato K, Kitamura K, Nishimura M, Sawai S, Matsushita K, Suzuki K, Ota S, Miyauchi H, Matsubara H, Nakatani Y, Nomura F.
    • Journal Title

      Clin Biochem.

      Volume: 47 Issue: 18 Pages: 340-3

    • DOI

      10.1016/j.clinbiochem.2014.09.013

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] How proteomic ApoE serotyping could impact Alzheimer's disease risk assessment: genetic testing by proteomics.2014

    • Author(s)
      Nishimura M, Satoh M, Matsushita K, Nomura F.
    • Journal Title

      Expert Rev Proteomics.

      Volume: 11 Issue: 4 Pages: 405-7

    • DOI

      10.1586/14789450.2014.936390

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Second-generation antipsychotics and bone turnover in schizophrenia.2014

    • Author(s)
      Okita K, Kanahara N, Nishimura M, Yoshida T, Yasui-Furukori N, Niitsu T, Yoshida T, Ishikawa M, Kimura H, Nomura F, Iyo M.
    • Journal Title

      Schizophr Res.

      Volume: 157 Issue: 1-3 Pages: 137-41

    • DOI

      10.1016/j.schres.2014.05.009

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Direct application of MALDI-TOF mass spectrometry to cerebrospinal fluid for rapid pathogen identification in a patient with bacterial meningitis.2014

    • Author(s)
      Segawa S, Sawai S, Murata S, Nishimura M, Beppu M, Sogawa K, Watanabe M, Satoh M, Matsutani T, Kobayashi M, Iwadate Y, Kuwabara S, Saeki N, Nomura F
    • Journal Title

      Clinica Chimica Acta

      Volume: 435 Pages: 59-59

    • DOI

      10.1016/j.cca.2014.04.024

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Human apolipoprotein E resequencing by proteomic analysis and its application to serotyping.2014

    • Author(s)
      Nishimura M, Satoh M, Nishimura S, Kakinuma S, Sato K, Sawai S, Matsushita K, Kado S, Kodera Y, Nomura F.
    • Journal Title

      PLoS One.

      Volume: - Issue: 1 Pages: e85356-e85356

    • DOI

      10.1371/journal.pone.0085356

    • Related Report
      2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Application of proteomic technologies to discover and identify biomarkers for periodontal diseases in gingival crevicular fluid: A review2014

    • Author(s)
      Tsuchida S, Satoh M, Sogawa K, Kawashima Y, Kado S, Ishige T, Beppu M, Sawai S, Nishimura M, Kodera Y, Matsushita K, Nomura F.
    • Journal Title

      PROTEOMICS - Clinical Applications Special Issue: Proteomics and the Eye

      Volume: 8 Issue: 3-4 Pages: 232-240

    • DOI

      10.1002/prca.201300122

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] he FLS (Fatty liver Shionogi) mouse reveals local expressions of lipocalin-2, CXCL1 and CXCL9 in the liver with non-alcoholic steatohepatitis.2013

    • Author(s)
      Semba T, Nishimura M, Nishimura S, Ohara O, Ishige T, Ohno S, Nonaka K, Sogawa K, Satoh M, Sawai S, Matsushita K, Imazeki F, Yokosuka O, Nomura F.
    • Journal Title

      BMC Gastroenterol.

      Volume: 13 Issue: 1 Pages: 120-127

    • DOI

      10.1186/1471-230x-13-120

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Application of quantitative proteomic analysis using tandem mass tags for discovery and identification of novel biomarkers in periodontal disease.2013

    • Author(s)
      Tsuchida S, Satoh M, Kawashima Y, Sogawa K, Kado S, Sawai S, Nishimura M, Ogita M, Takeuchi Y, Kobyashi H, Aoki A, Kodera Y, Matsushita K. Izumi Y. Nomura F
    • Journal Title

      Proteomics

      Volume: Vol.13 Issue: 15 Pages: 2339-2350

    • DOI

      10.1002/pmic.201200510

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Serum fibrinogen alpha C-chain 5.9 kDa fragment (FIC 5.9) as a biomarker for early detection of hepatic fibrosis related to hepatitis C virus2013

    • Author(s)
      Sogawa K, Noda K, Umemura H, Seimiya M, Kuga T, Tomonaga T, Nishimura M, Kanai F, Imazeki F, Takizawa H, Yoneda M, Nakajima A, Tsutsumi M, Yokosuka O, Nomura F
    • Journal Title

      Proteomics Clin Appl

      Volume: (in press) Issue: 5-6 Pages: 424-431

    • DOI

      10.1002/prca.201200094

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Preanalytical evaluation of serum 25-hydroxyvitamin D3 and 25-hydroxyvitamin D2 measurements using LC-MS/MS.2013

    • Author(s)
      Mochizuki A, Kodera Y, Saito T, Satoh M, Sogawa K, Nishimura M, Seimiya M,Kubota M, Nomura F.
    • Journal Title

      Clin Chim Acta.

      Volume: 420 Pages: 114-120

    • DOI

      10.1016/j.cca.2012.10.041

    • Related Report
      2013 Research-status Report 2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Proteomic analysis of gingival crevicular fluid for discovery of novel periodontal disease markers.2012

    • Author(s)
      Tsuchida S
    • Journal Title

      Proteomics.

      Volume: 12(13) Issue: 13 Pages: 2190-202

    • DOI

      10.1002/pmic.201100655

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Pentanucleotide repeat-primed PCR for genetic diagnosis of spinocerebellar ataxia type 31.2012

    • Author(s)
      Ishige T, Sawai S, Itoga S, Sato K, Utsuno E, Beppu M, Kanai K, Nishimura M, Matsushita K, Kuwabara S, Nomura F.
    • Journal Title

      J Hum Genet

      Volume: 57(12) Issue: 12 Pages: 807-808

    • DOI

      10.1038/jhg.2012.112

    • NAID

      10031145890

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Journal Article] Discrimination of methicillin-resistant Staphylococcus aureus from methicillin-susceptible Staphylococcus aureus or coagulase-negative staphylococci by detection of penicillin-binding protein 2 and penicillin-binding protein 2' using a bioluminescent enzyme immunoassay.2012

    • Author(s)
      Shiga K, Gomi K, Nishimura M, Watanabe M, Nomura F, Kajiyama N.
    • Journal Title

      J Immunol Methods.

      Volume: Epub ahead of print Issue: 1-2 Pages: 40-45

    • DOI

      10.1016/j.jim.2012.11.012

    • Related Report
      2012 Research-status Report
    • Peer Reviewed
  • [Presentation] 「検査室におけるソフトイオン化質量分析法の役割と方向性」2013

    • Author(s)
      西村 基、野村文夫
    • Organizer
      第60回日本臨床検査医学会学術集会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Research-status Report
    • Invited
  • [Presentation] 「千葉大学病院におけるリンチ症候群に対するMSI(microsatellite instability)検査の立ち上げについて」2013

    • Author(s)
      松下一之、佐藤謙一、石毛崇之、北村浩一、澤井摂、西村基、糸賀栄、野村文夫
    • Organizer
      第60回日本臨床検査医学会学術集会
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2013 Research-status Report
  • [Presentation] 「LC-MS/MSによる25OH-ビタミンDおよび1,25(OH)2-ビタミンD測定における誘導体化の有用性の検討」2013

    • Author(s)
      石毛崇之、佐藤守、西村基、斉藤達也、土田祥央、澤井摂、松下一之、小寺義男、野村文夫
    • Organizer
      日本臨床検査自動化学会第45回大会
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] 「細菌検査における MALDI-TOF MS を用いた Nocardia 属の同定について」2013

    • Author(s)
      瀬川俊介、西村 基、曽川一幸、村田正太、斉藤知子、宮部安規子、佐海知子、上原麻美、渡邊正治、亀井克彦、野村文夫
    • Organizer
      第38回日本医用マススペクトル学会年会
    • Place of Presentation
      神戸市産業振興センター
    • Related Report
      2013 Research-status Report
  • [Presentation] 「PTAD 誘導体化を用いた LC-MS/MS による 25OH-ビタミン D および 1,25(OH) 2-ビタミンD測定」2013

    • Author(s)
      石毛崇之、佐藤 守、西村 基,斉藤達也、土田祥央、澤井 摂、松下一之、小寺義男、野村文夫
    • Organizer
      第38回日本医用マススペクトル学会年会
    • Place of Presentation
      神戸市産業振興センター
    • Related Report
      2013 Research-status Report
  • [Presentation] 「歯周病患者マーカー探索と病態解析における質量分析技術の有用性」2013

    • Author(s)
      土田祥央、佐藤 守、曽川一幸、川島祐介、荷堂清香、荻田真弓、竹内康雄、小林宏明、青木 章、澤井 摂、西村 基、小寺義男、松下一之、和泉雄一、野村文夫
    • Organizer
      第38回日本医用マススペクトル学会年会
    • Place of Presentation
      神戸市産業振興センター
    • Related Report
      2013 Research-status Report
  • [Presentation] Serum Fibrinogen Alpha C-chain 5.9kDa Fragment (FIC5.9) as a Biomarkerfor Early Detectionof Hepatic Fibrosis Relatedto Hepatitis C Virus2013

    • Author(s)
      Wataru Kikuchi, Kenta Noda, KazuyukiSogawa, MotoiNishimura, Hideki Ishihara, Fumio Nomura.
    • Organizer
      the 12th Human Proteome Organization Congress
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] Applicationof Quantitative Proteomic Analysis Using Tandem Mass Tagsfor Discoveryand Identificationof Novel Biomarkersin Periodontal Disease2013

    • Author(s)
      Sachio Tsuchida , Mamoru Satoh, Yusuke Kawashima, Kazuyuki Sogawa, Sayaka Kado, Setsu Sawai, Motoi Nishimura, Mayumi Ogita, Yasuo Takeuchi , Hiroaki Kobyashi, Akira Aoki, Yoshio Kodera, Kazuyuki Matsushita, Yuichi Izumi, Fumio Nomura.
    • Organizer
      the 12th Human Proteome Organization Congress
    • Place of Presentation
      パシフィコ横浜
    • Related Report
      2013 Research-status Report
  • [Presentation] 「BRCA1変異陽性HBOCに対してリスク低減予防的両側卵巣卵管全摘出術を施行し卵管漿液性上皮内腺癌(STIC)を認めた一例」2013

    • Author(s)
      松下一之, 宇津野恵美, 石川博士, 糸賀栄, 長田久夫, 長嶋健, 西村基, 澤井摂, 別府美奈子, 楯真一, 清川貴子, 高橋葉子, 太田聡, 中谷行雄, 生水真紀夫, 野村文夫
    • Organizer
      第37回日本遺伝カウンセリング学会学術集会
    • Place of Presentation
      川崎市産業振興会館
    • Related Report
      2013 Research-status Report
  • [Presentation] 「特徴的な臨床症状・画像所見がみられたアレキサンダー病の1例」2013

    • Author(s)
      別府美奈子, 澤井摂, 宇津野恵美, 葛田衣重, 西村基, 松下一之, 桑原聡, 野村文夫
    • Organizer
      第37回日本遺伝カウンセリング学会学術集会
    • Place of Presentation
      川崎市産業振興会館
    • Related Report
      2013 Research-status Report
  • [Presentation] 「千葉大学病院における遺伝カウンセリングロールプレイ実習」2013

    • Author(s)
      野村文夫, 澤井摂, 宇津野恵美, 長田久夫, 松下一之, 西村基, 別府美奈子, 高木敦子, 柿沼宏明, 増田健太郎, 都甲明子, 羽田明
    • Organizer
      第37回日本遺伝カウンセリング学会学術集会
    • Place of Presentation
      川崎市産業振興会館
    • Related Report
      2013 Research-status Report
  • [Presentation] 球脊髄性筋萎縮症における遺伝カウンセリング2013

    • Author(s)
      別府美奈子、澤井摂、宇津野恵美、新川裕美、葛田衣重、西村基、松下一之、羽田明、桑原聡、野村文夫
    • Organizer
      日本人類遺伝学会第58回大会
    • Place of Presentation
      仙台市 江陽グランドホテル
    • Related Report
      2013 Research-status Report
  • [Presentation] ApoE (Apolipoprotein E) typing from small amounts of blood samples2013

    • Author(s)
      Motoi Nishimura, Satomi Nishimura, Mamoru Satoh, Shoko Kakinuma, Kenichi Satoh, Setsu Sawai, Kazuyuki Matsushita , Sayaka Kado, Yoshio Kodera, Fumio Nomura
    • Organizer
      MSACL2013 Mass Spectrometry: Applications to the Clinical Laboratory
    • Place of Presentation
      Sheraton Hotel & Marina • San Diego, CA, USA
    • Related Report
      2012 Research-status Report
  • [Presentation] 血清タンパク質よりの Apolipoprotein E (ApoE) タイピング2012

    • Author(s)
      西村基 、西村里美、佐藤守、澤井摂、柿沼翔子、佐藤謙一、 松下一之、小寺義男、野村文夫
    • Organizer
      日本人類遺伝学会 第57回大会
    • Place of Presentation
      京王プラザホテル
    • Related Report
      2012 Research-status Report
  • [Presentation] 血清よりのApolipoprotein E (ApoE) タイピング2012

    • Author(s)
      西村基、西村里美、佐藤守、柿沼翔子、佐藤謙一、澤井摂、 荷堂清香、小寺義男、野村文夫
    • Organizer
      第37回日本医用マススペクトル学会年会
    • Place of Presentation
      愛知県産業労働センター
    • Related Report
      2012 Research-status Report
  • [Remarks] Assessing Risk with ApoE Serotyping

    • URL

      http://acceleratingscience.com/proteomics/assessing-risk-for-alzheimers-and-dyslipidemia-with-apoe-serotyping/

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2013-05-31   Modified: 2019-07-29  

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