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Dynamics of Molecular Pattern Recognition in Protein Interaction

Research Project

Project/Area Number 25220205
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Biomolecular chemistry
Research InstitutionThe University of Tokyo

Principal Investigator

HAMAKUBO TAKAO  東京大学, 先端科学技術研究センター, 教授 (90198797)

Co-Investigator(Kenkyū-buntansha) 堀内 恵子  東京大学, 先端科学技術研究センター, 助教 (00456203)
太期 健二  東京大学, 先端科学技術研究センター, 特任助教 (20466866)
川村 猛  東京大学, アイソトープ総合センター, 准教授 (70306835)
篠田 恵子  東京大学, 先端科学技術研究センター, 特任助教 (80646951)
津本 浩平  東京大学, 大学院工学系研究科(工学部), 教授 (90271866)
岩成 宏子  東京大学, 先端科学技術研究センター, 准教授 (20176556)
Co-Investigator(Renkei-kenkyūsha) Fujitani Hideaki  東京大学, 先端科学技術研究センター, 特任教授 (50417151)
Nagatoishi Satoru  東京大学, 医科学研究所, 助教 (30550248)
Research Collaborator Yamashita Takefumi  東京大学, 先端科学技術研究センター, 特任准教授 (50615622)
Project Period (FY) 2013-05-31 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥210,600,000 (Direct Cost: ¥162,000,000、Indirect Cost: ¥48,600,000)
Fiscal Year 2017: ¥33,930,000 (Direct Cost: ¥26,100,000、Indirect Cost: ¥7,830,000)
Fiscal Year 2016: ¥35,880,000 (Direct Cost: ¥27,600,000、Indirect Cost: ¥8,280,000)
Fiscal Year 2015: ¥39,130,000 (Direct Cost: ¥30,100,000、Indirect Cost: ¥9,030,000)
Fiscal Year 2014: ¥47,580,000 (Direct Cost: ¥36,600,000、Indirect Cost: ¥10,980,000)
Fiscal Year 2013: ¥54,080,000 (Direct Cost: ¥41,600,000、Indirect Cost: ¥12,480,000)
Keywords敗血症 / ヒストン障害 / ペントラキシン / RNAプロセッシング / 細胞周期 / 自然免疫 / パターン認識受容体 / オルタナティブスプライシング / 血管内皮細胞 / ヒストン / タンパク質相互作用 / スプライシング / 分子認識 / コンピュータシミュレーション
Outline of Final Research Achievements

In this study, we have analyzed the interaction pattern between PTX3 and histone, and obtained candidate molecules for regulating histone cytotoxicity in sepsis. Also we have detected direct interacting protein of WTAP and revealed the relation to alternative splicing of several target genes. We have obtained a candidate molecule which inhibits the interaction of WTAP and associating proteins. This should be a drug candidate as a RNA processing regulator in various biological phenomena. We identified a candidate peptide of aggregation prone part of PTX3 and interaction part in histone H3. Also we found the micro-particle release from histone damaged endothelial cells and developed specific antibodies to detect the identified marker proteins on the particle.

Assessment Rating
Verification Result (Rating)

B

Assessment Rating
Result (Rating)

B: Progress in the research is delayed than the initial goal. Further efforts are necessary.

Report

(10 results)
  • 2018 Research Progress Assessment (Verification Result) ( PDF )
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • 2013 Abstract ( PDF )   Annual Research Report
  • Research Products

    (84 results)

All 2018 2017 2016 2015 2014 2013 Other

All Int'l Joint Research (2 results) Journal Article (42 results) (of which Int'l Joint Research: 14 results,  Peer Reviewed: 42 results,  Open Access: 26 results,  Acknowledgement Compliant: 5 results) Presentation (28 results) (of which Int'l Joint Research: 4 results,  Invited: 11 results) Book (2 results) Remarks (8 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 1 results)

  • [Int'l Joint Research] Mount Sinai School of Medicine(米国)

    • Related Report
      2015 Annual Research Report
  • [Int'l Joint Research] Eotvos Lorand University(ハンガリー)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Role of METTL20 in regulating β-oxidation and heat production in mice under fasting or ketogenic conditions2018

    • Author(s)
      Shimazu Tadahiro、Furuse Tamio、Balan Shabeesh、Yamada Ikuko、Okuno Shuzo、Iwanari Hiroko、Suzuki Takehiro、Hamakubo Takao、Dohmae Naoshi、Yoshikawa Takeo、Wakana Shigeharu、Shinkai Yoichi
    • Journal Title

      Sci Rep.

      Volume: 8 Issue: 1 Pages: 1179-1179

    • DOI

      10.1038/s41598-018-19615-4

    • NAID

      120006539598

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Visualization of ligand-induced Gi-protein activation in chemotaxing cells2017

    • Author(s)
      Masuda Kazuyuki、Kitakami Jun-ichi、Kozasa Tohru、Kodama Tatsuhiko、Ihara Sigeo、Hamakubo Takao
    • Journal Title

      FASEB JOURNAL

      Volume: 31 Issue: 3 Pages: 910-919

    • DOI

      10.1096/fj.201601102r

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Plasma irradiation effects to intra-abdominal organs compared with adhesion mouse model2017

    • Author(s)
      Soda Keita、Yamashita Hiroharu、Chang Kyungho、Kawamura Takeshi、Hamakubo Takao、Shimizu Nobuyuki
    • Journal Title

      Plasma Medicine

      Volume: 7 Issue: 4 Pages: 347

    • DOI

      10.1615/plasmamed.2018019483

    • URL

      https://pure.teikyo.jp/en/publications/2049ccaa-a291-4d29-a667-e2147ca84ff9

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Plasma Irradiation Effects to Intra-Abdominal Organ Compared with Adhesion Mouse Model2017

    • Author(s)
      K. Soda, H. Yamashita, K. Chang, T. Kawamura, T. Hamakubo and N. Shimizu
    • Journal Title

      Plasma Medicine

      Volume: 印刷中

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Protective Effect against Extracellular Histones Afforded by Long-Pentraxin PTX3 as a Regulator of NETs.2016

    • Author(s)
      Daigo K, Takamatsu Y, Hamakubo T
    • Journal Title

      Frontiers in Immunology

      Volume: 7

    • DOI

      10.3389/fimmu.2016.00344

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Physiological levels of pentraxin 3 and albumin attenuate vascular endothelial cell damage induced by histone H3 in vitro2016

    • Author(s)
      Iba T, Hamakubo T, Nagaoka I, Sato K, Jecko T.
    • Journal Title

      Microcirculation.

      Volume: 23 Pages: 240-247

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Kinetic exclusion assay of monoclonal antibody affinity to the membrane protein Robo1 displayed on baculovirus.2016

    • Author(s)
      Kusano-Arai O, Fukuda R, Kamiya W, Iwanari H, Hamakubo T.
    • Journal Title

      Anal Biochem.

      Volume: Apr 16 Pages: 30027-6

    • DOI

      10.1016/j.ab.2016.04.004

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Physiological Levels of Pentraxin 3 and Albumin Attenuate Vascular Endothelial Cell Damage Induced by Histone H3 In Vitro.2016

    • Author(s)
      Iba T, Hamakubo T, Nagaoka I, Sato K, Thachil J
    • Journal Title

      Microcirculation

      Volume: 23 Issue: 3 Pages: 240-247

    • DOI

      10.1111/micc.12269

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Suppression of Slit2/ROBO1 mediated HUVEC migration by Robo42016

    • Author(s)
      Enomoto S, Mitsui K, Kawamura T, Iwanari H, Daigo K, Horiuchi K, Minami T, Kodama T, Hamakubo T.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 469 Issue: 4 Pages: 797-802

    • DOI

      10.1016/j.bbrc.2015.12.075

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Severely exacerbated neuromyelitis optica rat model with extensive astrocytopathy by high affinity anti-aquaporin-4 monoclonal antibody.2015

    • Author(s)
      Kurosawa K, Misu T, Takai Y, Sato DK, Takahashi T, Abe Y, Iwanari H, Ogawa R, Nakashima I, Fujihara K, Hamakubo T, Yasui M, Aoki M.
    • Journal Title

      Acta Neuropathol Commun

      Volume: 4 Issue: 1 Pages: 783-783

    • DOI

      10.1186/s40478-015-0259-2

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Crystal structure of the anion exchanger domain of human erythrocyte band 32015

    • Author(s)
      Arakawa T, Kobayashi-Yurugi T, Alguel Y, Iwanari H, Hatae H, Iwata M, Abe Y, Hino T, Ikeda-Suno C, Kuma H, Kang D, Murata T, Hamakubo T, Cameron AD, Kobayashi T, Hamasaki N, Iwata S
    • Journal Title

      Science

      Volume: 350 Issue: 6261 Pages: 680-684

    • DOI

      10.1126/science.aaa4335

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Copper Transport Protein Antioxidant-1 Promotes Inflammatory Neovascularization via Chaperone and Transcription Factor Function2015

    • Author(s)
      Gin-Fu Chen, Varadarajan Sudhahar, Seock-Won Youn, Archita Das, Jaehyung Cho, Tetsuro Kamiya, Norifumi Urao, Ronald D. McKinney, Bayasgalan Surenkhuu, Takao Hamakubo, Hiroko Iwanari, Senlin Li, John W. Christman, Saran Shantikumar, Gianni D. Angelini, Costanza Emanueli, Masuko Ushio-Fukai, Tohru Fukai
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 14780-14780

    • DOI

      10.1038/srep14780

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Structure and mechanism of the mammalian fructose transporter GLUT52015

    • Author(s)
      Nomura N, Verdon G, Kang HJ, Shimamura T, Nomura Y, Sonoda Y, Hussien SA, Qureshi AA, Coincon M, Sato Y, Abe H, Nakada-Nakura Y, Hino T, Arakawa T, Kusano-Arai O, Iwanari H, Murata T, Kobayashi T, Hamakubo T, Kasahara M, Iwata S, Drew D
    • Journal Title

      Nature

      Volume: 526 Issue: 7573 Pages: 397-401

    • DOI

      10.1038/nature14909

    • NAID

      120005657713

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] High avidity chimeric monoclonal antibodies against the extracellular domains of human aquaporin-4 competing with the neuromyelitis optica autoantibody, NMO-IgG.2015

    • Author(s)
      Miyazaki-Komine K, Takai Y, Huang P, Kusano-Arai O, Iwanari H, Misu T, Koda K, Mitomo K, Sakihama T, Toyama Y, Fujihara K, Hamakubo T, Yasui M, Abe Y.
    • Journal Title

      Br J Pharmacol

      Volume: 173 Issue: 1 Pages: 103-103

    • DOI

      10.1111/bph.13340

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analysis of the subcellular localization of the human histone methyltransferase SETDB12015

    • Author(s)
      Tachibana K, Gotoh E, Kawamata N, Ishimoto K, Uchihara Y, Iwanari H, Sugiyama A, Kawamura T, Mochizuki Y, Tanaka T, Sakai J, Hamakubo T, Kodama T, Doi T.
    • Journal Title

      Biochem Biophys Res Commun

      Volume: 465 Issue: 4 Pages: 725-731

    • DOI

      10.1016/j.bbrc.2015.08.065

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] MicroRNA-153 regulates the acquisition of gliogenic competence by neural stem cells.2015

    • Author(s)
      Tsuyama J, Bunt J, Richards LJ, Iwanari H, Mochizuki Y, Hamakubo T, Shimazaki T*, Okano H*
    • Journal Title

      Stem Cell Reports

      Volume: 5 Issue: 3 Pages: 365-377

    • DOI

      10.1016/j.stemcr.2015.06.006

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] 90Y-Labeled Anti-ROBO1 Monoclonal Antibody Exhibits Antitumor Activity against Small Cell Lung Cancer Xenografts.2015

    • Author(s)
      Fujiwara K, Koyama K, Suga K, Ikemura M, Saito Y, Hino A, Iwanari H, Kusano-Arai O, Mitsui K, Kasahara H, Fukayama M, Kodama T, Hamakubo T, Momose T.
    • Journal Title

      PLoS One.

      Volume: May 27;10(5) Issue: 5 Pages: e0125468-e0125468

    • DOI

      10.1371/journal.pone.0125468

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Lysophosphatidylcholine promotes SREBP-2 activation via rapid cholesterol efflux and SREBP-2-independent cytokine release in human endothelial cells2015

    • Author(s)
      Morita M, Sekine A, Urano Y, Nishimura T, Takabe W, Arai H, Hamakubo T, Kodama T, Noguchi N.
    • Journal Title

      J Biochem.

      Volume: 158 Issue: 4 Pages: 331

    • DOI

      10.1093/jb/mvv044

    • NAID

      40020615439

    • URL

      https://pure.teikyo.jp/en/publications/1e02201e-e232-4a4a-b919-db1e444d7565

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Factor H-related protein 5 interacts with pentraxin 3 and the extracellular matrix and modulates complement activation.2015

    • Author(s)
      Csincsi ÁI, Kopp A, Zöldi M, Bánlaki Z, Uzonyi B, Hebecker M, Caesar JJ, Pickering MC, Daigo K, Hamakubo T, Lea SM, Goicoechea de Jorge E, Józsi M.
    • Journal Title

      J Immunol.

      Volume: 194 Issue: 10 Pages: 4963-4973

    • DOI

      10.4049/jimmunol.1403121

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Differential expression of pentraxin 3 in neutrophils.2015

    • Author(s)
      Razvina O, Jiang S, Matsubara K, Ohashi R, Hasegawa G, Aoyama T, Daigo K, Kodama T, Hamakubo T, Naito M.
    • Journal Title

      Exp Mol Pathol

      Volume: 98 Issue: 1 Pages: 33-40

    • DOI

      10.1016/j.yexmp.2014.11.009

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chemical corrector treatment ameliorates increased seizure susceptibility in a mouse model of familial temporal lobe epilepsy.2015

    • Author(s)
      Yokoi N, Fukata Y, Kase D, Miyazaki T, Jaegle M, Ohkawa T, Takahashi N, Iwanari H, Mochizuki Y, Hamakubo T, Imoto K, Meijer D, Watanabe M, Fukata M
    • Journal Title

      Nat Med

      Volume: 21 Issue: 1 Pages: 19-26

    • DOI

      10.1038/nm.3759

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses.2015

    • Author(s)
      Nakayama T, Mizohata E, Yamashita T, Nagatoishi S, Nakakido M, Iwanari H, Mochizuki Y, Kado Y, Yokota Y, Satoh R, Tsumoto K, Fujitani H, Kodama T, Hamakubo T, Inoue T.
    • Journal Title

      Protein Sci

      Volume: 24 Issue: 3 Pages: 328-340

    • DOI

      10.1002/pro.2619

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Conjugation-free, visual, and quantitative evaluation of inhibitors on protein tyrosine kinases and phosphatases with a luminescent Tb(III) complex2014

    • Author(s)
      Hiroki Akiba, Jun Sumaoka, Takao Hamakubo, Makoto Komiyama
    • Journal Title

      Analytical and Bioanalytical Chemistry

      Volume: 406 Issue: 12 Pages: 2957-2964

    • DOI

      10.1007/s00216-014-7707-x

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Immunostaining of oxidized DJ-1 in human and mouse brains.2014

    • Author(s)
      Saito, Y., T. Miyasaka, H. Hatsuta, K. Takahashi-Niki, K. Hayashi, Y. Mita, O. Kusano-Arai, H. Iwanari, H. Ariga, T. Hamakubo, Y. Yoshida, E. Niki, S. Murayama, Y. Ihara and N. Noguchi
    • Journal Title

      J Neuropathol Exp Neurol

      Volume: 73 Issue: 7 Pages: 714-728

    • DOI

      10.1097/nen.0000000000000087

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] PPARβ/δ activation of CD300a controls intestinal immunity.2014

    • Author(s)
      Tanaka T, Tahara-Hanaoka S, Nabekura T, Ikeda K, Jiang S, Tsutsumi S, Inagaki T, Magoori K, Higurashi T, Takahashi H, Tachibana K, Tsurutani Y, Raza S, Anai M, Minami T, Wada Y, Yokote K, Doi T, Hamakubo T, Auwerx J, Gonzalez FJ, Nakajima A, Aburatani H, Naito M, Shibuya A, Kodama T, Sakai J.
    • Journal Title

      Sci Rep

      Volume: 4 Issue: 1 Pages: 5412-5412

    • DOI

      10.1038/srep05412

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Gα13/PDZ-RhoGEF/RhoA signaling is essential for gastrin-releasing peptide receptor-mediated colon cancer cell migration.2014

    • Author(s)
      Patel M, Kawano T, Suzuki N, Hamakubo T, Karginov AV, Kozasa T.
    • Journal Title

      Mol Pharmacol

      Volume: 86 Issue: 3 Pages: 252-262

    • DOI

      10.1124/mol.114.093914

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A 90Y-labelled anti-ROBO1 monoclonal antibody exhibits antitumour activity against hepatocellular carcinoma xenografts during ROBO1-targeted radioimmunotherapy.2014

    • Author(s)
      Fujiwara K, Koyama K, Suga K, Ikemura M, Saito Y, Hino A, Iwanari H, Kusano-Arai O, Mitsui K, Kasahara H, Fukayama M, Kodama T, Hamakubo T, Momose T.
    • Journal Title

      EJNMMI Research

      Volume: 4 Issue: 1 Pages: 29-29

    • DOI

      10.1186/s13550-014-0029-3

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Generation of antibodies against membrane proteins.2014

    • Author(s)
      Hamakubo T, Kusano-Arai O, Iwanari H.
    • Journal Title

      Biochim Biophys Acta

      Volume: 1844 Issue: 11 Pages: 1920-1924

    • DOI

      10.1016/j.bbapap.2014.08.007

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protective effect of the long pentraxin PTX3 against histone-mediated endothelial cell cytotoxicity in sepsis.2014

    • Author(s)
      Daigo K, Nakakido M, Ohashi R, Fukuda R, Matsubara K, Minami T, Yamaguchi N, Inoue K, Jiang S, Naito M, Tsumoto K, Hamakubo T.
    • Journal Title

      Sci Signal

      Volume: 7 Issue: 343

    • DOI

      10.1126/scisignal.2005522

    • NAID

      120005537769

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Laboratory-size three-dimensional x-ray microscope with Wolter type I mirror optics and an electron-impact water window x-ray source.2014

    • Author(s)
      Ohsuka S , Ohba A , Onoda S , Nakamoto K , Nakano T , Miyoshi M , Soda K , Hamakubo T.
    • Journal Title

      Review of Scientific Instruments.

      Volume: 85(9) Pages: 093701-093701

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Proteoliposome-based selection of a recombinant antibody fragment against the human M2 muscarinic acetylcholine receptor.2014

    • Author(s)
      Suharni, Nomura Y, Arakawa T, Hino T, Abe H, Nakada-Nakura Y, Sato Y, Iwanari H, Shiroishi M, Asada H, Shimamura T, Murata T, Kobayashi T, Hamakubo T, Iwata S, Nomura N.
    • Journal Title

      Monoclon Antib Immunodiagn Immunother

      Volume: 33 Issue: 6 Pages: 378-385

    • DOI

      10.1089/mab.2014.0041

    • NAID

      120005530933

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical initiatives linking Japanese and Swedish healthcare resources on cancer studies utilizing Biobank Repositories.2014

    • Author(s)
      Nishimura T , Kawamura T , Sugihara Y , Bando Y , Sakamoto S , Nomura M , Ikeda N , Ohira T , Fujimoto J , Tojo H , Hamakubo T , Kodama T , Andersson R , Fehniger TE , Kato H , Marko-Varga G.
    • Journal Title

      Clin Transl Med.

      Volume: 3(1) Pages: 61-61

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] G protein-dependent basal and evoked endothelial cell vWF secretion.2014

    • Author(s)
      Rusu L, Andreeva A, Visintine DJ, Kim K, Vogel SM, Stojanovic-Terpo A, Chernaya O, Liu G, Bakhshi FR, Haberichter SL, Iwanari H, Kusano-Arai O, Suzuki N, Hamakubo T, Kozasa T, Cho J, Du X, Minshall RD.
    • Journal Title

      Blood

      Volume: 123 Issue: 3 Pages: 442-450

    • DOI

      10.1182/blood-2013-03-489351

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification and Characterization of the X-Dimer of Human P-Cadherin : Implications for Homophilic Cell Adhesion2014

    • Author(s)
      Shota Kudo, Jose M. M. Caaveiro, Shuichiro Goda, Satoru Nagatoishi, Keisuke Ishii, Tadashi Matsuura, Yukio Sudou, Tatsuhiko Kodama, Takao Hamakubo, and Kouhei Tsumoto
    • Journal Title

      Biochemistry

      Volume: 53(11) Issue: 11 Pages: 1742-1752

    • DOI

      10.1021/bi401341g

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Novel role of copper transport protein antioxidant-1 in neointimal formation after vascular injury.2013

    • Author(s)
      Kohno T
    • Journal Title

      Arterioscler Thromb Vasc Biol.

      Volume: Apr; 33 (4) Issue: 4 Pages: 805-813

    • DOI

      10.1161/atvbaha.112.300862

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Human mannose-binding lectin 2 is directly regulated by peroxisome proliferator-activated receptors (PPARs) via a peroxisome proliferator responsive element2013

    • Author(s)
      Tachibana K, Takeuchi K, Inada H, Sugimoto K, Ishimoto K, Yamashita M, Maegawa T, Yamasaki D, Osada S, Tanaka T, Rakug H, Hamakubo T, Sakai J, Kodama T, Doi T
    • Journal Title

      The Journal of Biochemistry

      Volume: 154 (3) Issue: 3 Pages: 265-73

    • DOI

      10.1093/jb/mvt050

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Establishment of Monoclonal Antibodies Against the Extracellular Domain That Block Binding of NMO-IgG to AQP42013

    • Author(s)
      Miyazaki K.
    • Journal Title

      J. Neuroimmunol.

      Volume: 未定 Issue: 1-2 Pages: 107-16

    • DOI

      10.1016/j.jneuroim.2013.03.003

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Modification of p115RhoGEF Ser(330) regulates its RhoGEF activity.2013

    • Author(s)
      CHOW, C. R., SUZUKI, N., KAWAMURA, T., HAMAKUBO, T. & KOZASA, T.
    • Journal Title

      Cell Signal

      Volume: 25 Issue: 11 Pages: 2085-92

    • DOI

      10.1016/j.cellsig.2013.06.012

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A Novel Monoclonal Antibody Against the C-Terminal Region of Aquaporin-42013

    • Author(s)
      1. Ramadhanti J
    • Journal Title

      Monoclon Antib Immunodiagn Immunother

      Volume: 32 Issue: 4 Pages: 270-276

    • DOI

      10.1089/mab.2013.0007

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Wilms' tumor 1-associating protein complex and its role in alternative splicing and the cell cycle.2013

    • Author(s)
      Horiuchi K, Kawamura T, Iwanari H, Ohashi R, Naito M, Kodama T, Hamakubo T
    • Journal Title

      J Biol Chem

      Volume: 288 Issue: 46 Pages: 33292-33302

    • DOI

      10.1074/jbc.m113.500397

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A baculoviral display system to assay viral entry.2013

    • Author(s)
      Iida M , Yoshida T , Watari A , Yagi K , Hamakubo T , Kondoh M
    • Journal Title

      Biological and Pharmaceutical Bulletin

      Volume: 36(11) Pages: 1867-9

    • NAID

      130003382052

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants2013

    • Author(s)
      Aramaki, S., Hayashi, K., Kurimoto, K., Ohta, H., Yabuta, Y., Iwanari, H., Mochizuki, Y., Hamakubo, T., Kato, Y., Shirahige, K., and Saitou, M
    • Journal Title

      Developmental Cell

      Volume: 27 Issue: 5 Pages: 516-529

    • DOI

      10.1016/j.devcel.2013.11.001

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] Increased levels of plasma pentraxin 3 predict IVIG resistance and coronary artery lesion formation in patients with Kawasaki disease2017

    • Author(s)
      Toshiyuki Kitoh, Reizo Baba, Yoshiro Kitagawa, Atsushi Kaneko, Tomohito Hayakawa, Kiyoshi Yamakawa, Nozomi Nago, Akihisa Okumura, Noriaki Kume, Takao Hamakubo
    • Organizer
      The 18th International Vasculitis and ANCA Workshop
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2017-03-25
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Increased levels of plasma pentraxin 3 predict IVIG resistance and coronary artery lesion formation in patients with Kawasaki disease2017

    • Author(s)
      :Kitoh, T (Kitoh, Toshiyuki; Baba, R (Baba, Reizo) ; Kitagawa, Y (Kitagawa, Yoshiro) ; Muto, T (Muto, Taichiro) ; Okumura, A (Okumura, Akihisa) ; Kume, N (Kume, Noriaki; Hamakubo, T (Hamakubo, Takao)
    • Organizer
      EAP2017 Congress and MasterCourse
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] INCREASED LEVELS OF PLASMA PENTRAXIN 3 PREDICT IVIG RESISTANCE AND CORONARY ARTERY LESION FORMATION IN PATIENTS WITH KAWASAKI DISEASE2017

    • Author(s)
      :Kitoh, T (Kitoh, Toshiyuki ; Kitagawa, Y (Kitagawa, Yoshiro) ; Baba, R (Baba, Reizo); Kaneko, A (Kaneko, Atsushi) ; Hayakawa, T (Hayakawa, Tomohito) ; Muto, T (Muto, Taichiro); Okumura, A (Okumura, Akihisa[ ; Murotani, K (Murotani, Kenta) ; Kume, N (Kume, Noriaki) ; Hamakubo, T (Hamakubo, Takao)
    • Organizer
      18th International Vasculitis and ANCA Workshop
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] ヒストンの血管内皮細胞障害を阻害するPTX3の凝集パターン解析2017

    • Author(s)
      早田 敬太、中木戸 誠、太期 健二、高松 佑一郎、山下 雄史、岩成 宏子、津本 浩平、浜窪 隆雄
    • Organizer
      2017年度生命科学系会合同年次大会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 自然免疫のパターン認識受容体と新しい炎症像2017

    • Author(s)
      浜窪 隆雄
    • Organizer
      日本薬学会東海支部特別講演会
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] GPCRシグナルのライブセルイメージング2017

    • Author(s)
      浜窪 隆雄
    • Organizer
      第14回GPCR研究会2017
    • Related Report
      2017 Annual Research Report
    • Invited
  • [Presentation] Extracellular Histones on Endothelial Microparticles for Diagnosis of Endothelial Dysfunction2016

    • Author(s)
      Keita Soda, Takeshi Kawamura, Osamu K-Arai, Hiroko Iwanari and Takao Hamakubo.
    • Organizer
      第45回 日本免疫学会学術集会
    • Place of Presentation
      沖縄、日本
    • Year and Date
      2016-12-05
    • Related Report
      2016 Annual Research Report
  • [Presentation] ペントラキシン3(PTX3)と好中球由来タンパクとの相互作用による新たな生体防御機構2016

    • Author(s)
      太期 健二、インフォルツァート アントニオ、ボタッツィ バルバラ、マントバーニ アルベルト、浜窪 隆雄
    • Organizer
      第 60 回日本医真菌学会総会・学術集会
    • Place of Presentation
      東京、日本
    • Year and Date
      2016-10-01
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] がんの放射線抗体治療について2016

    • Author(s)
      浜窪 隆雄
    • Organizer
      お茶の水がん学アカデミア第120回集会
    • Place of Presentation
      順天堂大学(東京)
    • Year and Date
      2016-01-20
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 病原体排除の関わるペントラキシン3の敗血病への効果2015

    • Author(s)
      早田 敬太,浜窪 隆雄
    • Organizer
      第44回日本免疫学会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2015-11-18
    • Related Report
      2015 Annual Research Report
  • [Presentation] がんの抗体PETイメージングと抗体放射線治療について2015

    • Author(s)
      浜窪 隆雄
    • Organizer
      第30回日本薬物動態学会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2015-11-12
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Protective Effect of Pentraxin 3 in Animal Models of Sepsis2015

    • Author(s)
      Takao Hamakubo,Rie Fukuda,Hiroko Iwanari, ,Keita Soda,Kenji Daigo
    • Organizer
      Targeting Ebola Paris2015
    • Place of Presentation
      パリ(フランス)
    • Year and Date
      2015-05-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 膜タンパク質抗体の作製とドラッグデザイン2015

    • Author(s)
      浜窪隆雄
    • Organizer
      日本薬学会第135年会
    • Place of Presentation
      神戸
    • Year and Date
      2015-03-25
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] The Establishment of Peritoneal Adhesion Mouse Model For The Plasma Medicine2015

    • Author(s)
      Keita Soda,Hiroharu Yamashita,Kyungho Chang, Nobuyuki Shimizu,Takao Hamakubo
    • Organizer
      The 2nd international Workshop on Plasma for Cancer Treatmant
    • Place of Presentation
      名古屋
    • Year and Date
      2015-03-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] ②Pentraxin 3 in Coronary Artery Lesions in Kawasaki Disease2015

    • Author(s)
      Toshiyuki Kitoh, Yoshiro Kitagawa, Atsushi Kaneko, Masaki Shimizu, Akihiro Yachie, Nariaki  Kume, Takao Hamakubo
    • Organizer
      11th International Kawasaki Disease Symposium
    • Place of Presentation
      ハワイ
    • Year and Date
      2015-02-03 – 2015-02-06
    • Related Report
      2014 Annual Research Report
  • [Presentation] 胃がん転移のPET イメージングのための小分子化抗体のプローブ作製2015

    • Author(s)
      浜窪 隆雄
    • Organizer
      分子イメージングによる次世代がん研究と抗がん創薬・治療の推進
    • Place of Presentation
      東京(竹橋)
    • Year and Date
      2015-01-26
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 敗血症におけるペントラキシン3の血管内皮細胞保護効果について2014

    • Author(s)
      浜窪 隆雄
    • Organizer
      第20回エンドトキシン・自然免疫研究会
    • Place of Presentation
      東京(御茶ノ水)
    • Year and Date
      2014-12-04 – 2014-12-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 診断・治療のための小分子化抗体の設計について2014

    • Author(s)
      浜窪隆雄
    • Organizer
      次世代バイオ医薬品創出の向けた設計・基盤技術最前線
    • Place of Presentation
      東京(御茶ノ水)
    • Year and Date
      2014-10-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 難溶性蛋白質KAP8.1の溶液状態と粉末状態の多面的な解析による特徴付け2014

    • Author(s)
      Ganbat Javkhlan、松長 遼、秋葉 宏樹、下村 裕、新井 修、岩成 宏子、浜窪 隆雄、津本 浩平
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] 抗原ペプチドへの蛋白質融合が抗原-抗体相互作用に及ぼす影響の熱力学的評価2014

    • Author(s)
      宮鍋 一紘、秋葉 宏樹、中木戸 誠、新井 修、岩成 宏子、浜窪 隆雄、津本 浩平
    • Organizer
      第87回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2014-10-16
    • Related Report
      2014 Annual Research Report
  • [Presentation] バキュロウイルスと抗体テクノロジー2014

    • Author(s)
      浜窪 隆雄
    • Organizer
      第16回生命科学研究会
    • Place of Presentation
      熱海
    • Year and Date
      2014-01-09
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 熱力学的相互作用解析と分子動力学シミュレーションによる抗体の親和性向上のメカニズムの研究2013

    • Author(s)
      渡部 貴大,長門石 曉,山下 雄史,中山 泰亮,溝端 栄一,浜窪 隆雄,井上 豪,津本 浩平,児玉 龍彦,藤谷 秀章
    • Organizer
      第36回日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2013-12-03
    • Related Report
      2013 Annual Research Report
  • [Presentation] 低免疫原性化コアストレプトアビジンを用いた融合抗体の構築と解析2013

    • Author(s)
      湯村 恭平,宇井 美穂子,土居 洋文,杉山 暁,浜窪 隆雄,児玉 龍彦,津本 浩平
    • Organizer
      第36回日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2013-12-03
    • Related Report
      2013 Annual Research Report
  • [Presentation] 次世代バイオ医薬品における新規標的検索技術について2013

    • Author(s)
      浜窪 隆雄
    • Organizer
      次世代バイオ医薬品ワークショップ
    • Place of Presentation
      JST東京本部
    • Year and Date
      2013-12-01
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] 創傷治癒における炎症反応の分子メカニズム解析2013

    • Author(s)
      早田 敬太、太期 健二、川村 猛、山下 裕玄、張 京浩、榊田 創、池原 譲、清水 伸幸、浜窪 隆雄
    • Organizer
      名古屋プラズマ医療科学の創成第二回公開シンポジウム
    • Place of Presentation
      名古屋
    • Year and Date
      2013-09-28
    • Related Report
      2013 Annual Research Report
  • [Presentation] Flow Cytometric Detection of Asparagine Synthetase Protein in Leukemia Cell:Indication for L Asparaginese Therap2013

    • Author(s)
      Toshiyuki Kitoh, Kou Suchan Gao Siqiang, Masahito Tsurusawa, Hidefumi Kato, Yasuto Shimomura ,Tosinori Hori, Kimiyoshi Sakaguchi, Hirose Miwa, Takao Hamakubo
    • Organizer
      European Academy of Paediatrics Educational Congress&Mastercourse
    • Place of Presentation
      フランス
    • Year and Date
      2013-09-19
    • Related Report
      2013 Annual Research Report
  • [Presentation] Phosphatidylinositol 3-phosphatase myotubularin-related protein 6 (MTMR6) is regulated by small GTPase Rab1B in the early secretory and autophagic pathways2013

    • Author(s)
      望月 康弘,大橋 瑠子,川村 猛,岩成 宏子,児玉 龍彦,内藤 眞,浜窪 隆雄
    • Organizer
      第86回日本生化学学会大会
    • Place of Presentation
      横浜
    • Year and Date
      2013-09-12
    • Related Report
      2013 Annual Research Report
  • [Presentation] 細胞接着蛋白質P-cadherinの同種親和的二量体形成機構の解明2013

    • Author(s)
      工藤 翔太,ホセ カアベイロ,長門石 暁,浜窪 隆雄,児玉 龍彦,松浦 正,須藤 幸夫,津本 浩平
    • Organizer
      第86回日本生化学学会大会
    • Place of Presentation
      横浜
    • Year and Date
      2013-09-12
    • Related Report
      2013 Annual Research Report
  • [Book] サイエンスシグナリングジャパン2015

    • Author(s)
      太期 健二、津本 浩平、浜窪 隆雄
    • Total Pages
      2
    • Publisher
      米国科学振興協会
    • Related Report
      2015 Annual Research Report
  • [Book] 敗血症の診断/治療の実状と病態・メカニズムをふまえた開発戦略2013

    • Author(s)
      浜窪 隆雄ら執筆者 173名
    • Total Pages
      623
    • Publisher
      技術情報協会
    • Related Report
      2013 Annual Research Report
  • [Remarks] 浜窪隆雄研究室

    • URL

      https://qbm.rcast.u-tokyo.ac.jp/

    • Related Report
      2017 Annual Research Report
  • [Remarks] 浜窪隆雄研究室

    • URL

      http://www.qbm.rcast.u-tokyo.ac.jp/

    • Related Report
      2016 Annual Research Report 2015 Annual Research Report
  • [Remarks] 浜窪隆雄研究室 トピックス

    • URL

      http://www.qbm.rcast.u-tokyo.ac.jp/topics

    • Related Report
      2014 Annual Research Report
  • [Remarks] Hamakubo Lab Topics

    • URL

      http://www.qbm.rcast.u-tokyo.ac.jp/en/topics/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 先端研ヘッドラインニュース

    • URL

      http://www.rcast.u-tokyo.ac.jp/whatsnew/002_ja.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 東京大学プレスリリース記者発表一覧

    • URL

      http://www.u-tokyo.ac.jp/public/public01_260917_j.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 浜窪隆雄研究室 トピックス

    • URL

      http://www.qbm.rcast.u-tokyo.ac.jp/topics/2013-10-07.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] Hamakubo Lab Topics

    • URL

      http://www.qbm.rcast.u-tokyo.ac.jp/en/topics/2013-10-07.html

    • Related Report
      2013 Annual Research Report
  • [Patent(Industrial Property Rights)] 敗血症における血管内皮細胞傷害の診断法2016

    • Inventor(s)
      浜窪隆雄、早田敬太、川村猛
    • Industrial Property Rights Holder
      浜窪隆雄、早田敬太、川村猛
    • Industrial Property Rights Type
      特許
    • Filing Date
      2016-11-10
    • Related Report
      2016 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 全身性炎症反応症候群の治療又は予防剤2013

    • Inventor(s)
      浜窪隆雄、津本浩平
    • Industrial Property Rights Holder
      国立大学法人東京大学、学校法人順天堂
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013
    • Acquisition Date
      2017
    • Related Report
      2017 Annual Research Report

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Published: 2013-06-20   Modified: 2022-01-28  

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