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Hyperlink Management System for automated integration of biological databases by use of data IDs

Research Project

Project/Area Number 25280108
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Life / Health / Medical informatics
Research InstitutionTokai University

Principal Investigator

IMANISHI Tadashi  東海大学, 医学部, 教授 (80270461)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
Fiscal Year 2015: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2014: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2013: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Keywords生命情報学 / 生体分子 / 統合データベース / 論理的データ検索
Outline of Final Research Achievements

Hyperlink Management System (HMS; http://biodb.jp/) is an automatically updating, integrated database of data IDs and their relationships that are used in major biological databases. We newly added several databases concerning genomic polymorphisms into HMS, and realized a comprehensive data search in a recursive manner through a chain of hyperlinks, which can promote discoveries in the field of genome medicine. Also, we developed and released a web service for bulk retrieval of data IDs and URLs. In the near future, we plan to install new functions such as enrichment analysis tools.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (6 results)

All 2015 2014 2013 Other

All Presentation (5 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results) Remarks (1 results)

  • [Presentation] ヒト遺伝子多型の疾患リスク情報データベースVaDEの開発2015

    • Author(s)
      高橋定子、世良実穂、間宮健太郎、羽原拓哉、今西規
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場(兵庫県神戸市)
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] VaDE: a manually-curated database of reproducible associations between various traits and human genomic polymorphisms2015

    • Author(s)
      Y. Nagai, Y. Takahashi, and T. Imanishi
    • Organizer
      ISMB/ECCB 2015
    • Place of Presentation
      The Convention Center Dublin (Dublin, Ireland)
    • Year and Date
      2015-07-10
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] リンク自動管理システムによるデータベース統合化とデータマイニング基盤の構築2014

    • Author(s)
      今西規、小尾信男
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Integration and data-mining of human transcriptome and proteome databases in H-InvDB.2013

    • Author(s)
      Imanishi T
    • Organizer
      HUPO 2013
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] バイオデータベースの統合化とデータマイニングを推進するためのリンク自動管理システム2013

    • Author(s)
      Imanishi T, Obi N
    • Organizer
      日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2013 Annual Research Report
  • [Remarks] リンク自動管理システム

    • URL

      http://biodb.jp/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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