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Explanation of assembly mechanism of 5S RNP in eukaryotic ribosome biosynthesis

Research Project

Project/Area Number 25291008
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionHokkaido University

Principal Investigator

YAO Min  北海道大学, 先端生命科学研究科(研究院), 教授 (40311518)

Co-Investigator(Renkei-kenkyūsha) KOMODA Keisuke  北海道大学, 大学院先端生命科学研究院, 特任助教 (40581640)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2015: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2014: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2013: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywordsリボソーム生合成 / 5S RNP / Rrs1 / Rpf2 / 5S rRNA / X線結晶解析 / 相互作用解析 / 5S rRNP
Outline of Final Research Achievements

Proteins Rpf2 and Rrs1 act as ribosome assembly factors which recruit RpL5, RpL11 and 5S rRNA into pre-90S by formation of 5S RNP complex. In this study, in order to elucidate how Rpf2 and Rrs1 work for maturation of pre-90S, we determinate the Rpf2-Rrs1 core complex from Aspergillus nidulans. The structure contains the tightly interlocked N-terminal domains of Rpf2 and Rrs1. The long-helix of Rrs1 joins the C-terminal half of Rpf2 N-terminal domains as if it is a part of a single molecule. In addition, gel shift analysis of Rpf2-Rrs1 complex and its mutants revealed that the Rpf2-Rrs1 complex binds directly to 5S rRNA with three parts. Based on these studies and previous reports, we propose a model for ribosomal component recruitment to the pre-90S ribosome precursor.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (8 results)

All 2015 2014 Other

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Open Access: 1 results,  Acknowledgement Compliant: 2 results) Presentation (3 results) (of which Invited: 1 results) Remarks (2 results)

  • [Journal Article] Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis2015

    • Author(s)
      Nozomi Asano, Koji Kato, Akiyoshi Nakamura, Keisuke Komoda, Isao Tanaka, Min Yao
    • Journal Title

      Nucleic Acids Research

      Volume: 印刷中 Issue: 9 Pages: 4746-4757

    • DOI

      10.1093/nar/gkv305

    • NAID

      120005649121

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Crystallization and preliminary X-ray crystallographic analysis of ribosome assembly factors: the Rpf2-Rrs1 complex2014

    • Author(s)
      Nozomi Asano, Akiyoshi Nakamura, Keisuke Komoda, Koji Kato, Isao Tanaka and Min Yao
    • Journal Title

      Acta Crystallographica Section F

      Volume: 70 Issue: 12 Pages: 1649-1652

    • DOI

      10.1107/s2053230x14024182

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Direct interaction between EFL1 and SBDS is mediated by an intrinsically disordered insertion domain2014

    • Author(s)
      Nozomi Asano, Haruka Atsuumi, Akiyoshi Nakamura, Yoshikazu Tanaka, Isao Tanaka. Min Yao
    • Journal Title

      Biochemical and Biophysical Research Communications

      Volume: 443 Issue: 4 Pages: 1251-1256

    • DOI

      10.1016/j.bbrc.2013.12.143

    • NAID

      120005429607

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] ペプチド性タグを利用したタンパク質結晶化の新技術-タンパク質結晶構造解析のための実用的な結晶化タグ-2015

    • Author(s)
      姚閔
    • Organizer
      JST発 医療分野 新技術説明会 A-STEPから創出された最新シーズ技術を一挙公開
    • Place of Presentation
      JST東京本部別館(東京都千代田区)
    • Year and Date
      2015-10-09
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 真核生物リボソーム生合成関連因子Rpf2とRrs1の構造機能解析2015

    • Author(s)
      朝野希美,加藤公児,中村彰良,薦田圭介,田中勲,姚閔
    • Organizer
      第3回RIBOSOME MEETING
    • Place of Presentation
      ANAホリデイ・インリゾート宮崎(宮崎市)
    • Year and Date
      2015-03-17 – 2015-03-18
    • Related Report
      2014 Annual Research Report
  • [Presentation] リボソーム成熟に必須なタンパク質複合体の結晶構造解析へのチャレンジ2014

    • Author(s)
      朝野希美,中村彰良,薦田圭介,加藤公児,田中勲,姚閔
    • Organizer
      平成26年度日本結晶学会年会及び総会
    • Place of Presentation
      東京大学農学部(東京都文京区)
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
  • [Remarks] 北海道大学 X線構造生物学研究室 ホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 北海道大学 X線構造生物学研究室 ホームページ

    • URL

      http://altair.sci.hokudai.ac.jp/g6/

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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