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Structural basis of prevention by RNA aptamer of transformation of prion protein and its interaction with Ab

Research Project

Project/Area Number 25291013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Katahira Masato  京都大学, エネルギー理工学研究所, 教授 (70211844)

Co-Investigator(Renkei-kenkyūsha) NAGATA Takashi  京都大学, エネルギー理工学研究所, 准教授 (10415250)
MASHIMA Tsukasa  京都大学, エネルギー理工学研究所, 助教 (20707426)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥18,330,000 (Direct Cost: ¥14,100,000、Indirect Cost: ¥4,230,000)
Fiscal Year 2015: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Fiscal Year 2014: ¥6,110,000 (Direct Cost: ¥4,700,000、Indirect Cost: ¥1,410,000)
Fiscal Year 2013: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
KeywordsAb蛋白質 / プリオン蛋白質 / RNAアプタマー / 機能性核酸 / NMR / アミロイドβ / プリオン / 機能性RNA / アルツハイマー病 / 線維化 / 分子間相互作用 / アミロイドβタンパク質 / 抗プリオン活性 / 分子認識 / プリオンタンパク質 / RNAアプタマー / NMR / 相互作用 / プリオン病
Outline of Final Research Achievements

The Ab protein, that is supposed to be responsible for the Alzheimer's disease, forms the fibril. Recently it was proposed that the prion protein serves as a receptor of the Ab protein. This time, we studied the effect of the prion protein and the RNA aptamer against the prion protein on fibril formation of the Ab protein. First, it was confirmed that the Ab protein forms the fibril. Secondary, it was revealed that the prion protein interferes with the fibril formation of the Ab protein. Thirdly, it was demonstrated that the RNA aptamer against the prion protein cancels the interfering effect of the prion protein and restores the fibril formation of the Ab protein. Additionally, the techniques developed to study the structure and interactions of nucleic acids such as the RNA aptamer were applied to other nucleic acids. Then, the correlation between the unique structure of the nucleic acids and their function were elucidated.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (14 results)

All 2016 2015 2014 2013 Other

All Journal Article (5 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 4 results,  Acknowledgement Compliant: 1 results) Presentation (5 results) (of which Invited: 2 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Crosslinking reactions of 4-amino-6-oxo-2-vinylpyrimidine with guanine derivatives and structural analysis of the adducts2015

    • Author(s)
      S.Kusano, S. Ishiyama,Sik Lok Lam, T. Mashima, M. Katahira, K. Miyamoto, M. Aida, F. Nagatsugi
    • Journal Title

      Nucl.Acids Res

      Volume: 43 Issue: 16 Pages: 7717-7730

    • DOI

      10.1093/nar/gkv797

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Bifacial Base-Pairing Behaviors of 5-Hydroxyuracil DNA Bases Both through Hydrogen Bonding and Metal Coordination2015

    • Author(s)
      Takezawa, Y., Nishiyama K., Mashima T., Katahira, M. and Shionoya, M.
    • Journal Title

      Chemistry

      Volume: 21 Issue: 42 Pages: 14713-14716

    • DOI

      10.1002/chem.201502772

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Boosting of activity enhancement of K+-responsive quadruplex hammerhead ribozyme2015

    • Author(s)
      Yudai Yamaoki, Tsukasa Mashima, Takashi Nagata and Masato Katahira
    • Journal Title

      Chemical Communications

      Volume: 51 Issue: 27 Pages: 5898-5901

    • DOI

      10.1039/c5cc00961h

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition2014

    • Author(s)
      T. Hayashi, H. Oshima, T. Mashima, T. Nagata, M. Katahira, M. Kinoshita
    • Journal Title

      Nucleic Acids Research

      Volume: 42 Issue: 11 Pages: 6861-6875

    • DOI

      10.1093/nar/gku382

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Anti-prion activity of an RNA aptamer and its structural basis2013

    • Author(s)
      Mashima, T., Nishikawa, F., Kamatari Y. O., Fujiwara, H., Saimura, M., Nagata, T., Kodaki, T., Nishikawa, S., Kuwata, K., Katahira, M.
    • Journal Title

      Nucleic Acids Research

      Volume: 41 Issue: 2 Pages: 1355-1362

    • DOI

      10.1093/nar/gks1132

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] プリオン蛋白質とそれを標的とするRNA分子のAβ;繊維化への影響2016

    • Author(s)
      飯田 真美子、真嶋 司、山置 佑大、永田 崇、片平 正人
    • Organizer
      第16回日本蛋白質科学会
    • Place of Presentation
      福岡国際会議所(福岡市)
    • Year and Date
      2016-06-07
    • Related Report
      2015 Annual Research Report
  • [Presentation] 異常型プリオン蛋白質の産生を抑制する四重鎖核酸の構造解析2015

    • Author(s)
      真嶋司,西川富美子,鎌足雄司,永田崇,西川諭,桑田一夫,片平正人
    • Organizer
      第9回バイオ関連化学シンポジウム
    • Place of Presentation
      熊本大学(熊本市)
    • Year and Date
      2015-09-10
    • Related Report
      2015 Annual Research Report
  • [Presentation] Real-time monitoring and switching of enzyme/aptamer activities2015

    • Author(s)
      Katahira, M.
    • Organizer
      The 4th International Symposium on Drug Discovery and Design by NMR
    • Place of Presentation
      理化学研究所(横浜市)
    • Year and Date
      2015-02-04 – 2015-02-05
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Origin of the anti-prion activity of quadruplex2013

    • Author(s)
      Tsukasa Mashima, Fumiko Nishikawa, Yuji O. Kamatari, Masayuki Saimura, Takashi Nagata, Satoshi Nishikawa, Kazuo Kuwata, Masato Katahira
    • Organizer
      The 40th International Symposium on Nucleic Acids Chemistry 2013
    • Place of Presentation
      神奈川大学(横浜市)
    • Related Report
      2013 Annual Research Report
  • [Presentation] The deamination of APOBEC3G is controlled by the sliding-direction-dependent catalytic activity, and anti-prion activity of an RNA aptamer and its structual basis

    • Author(s)
      Ayako Furukawa, Kenji Sugase, Ryo Morishita, Takashi Nagata, Akifumi Takaori-Kondo, Akihide Ryo, Tsukasa Mashima, Fomiko Nishikawa, Satoshi Nishikawa, Yuji Kamatari, Kazuo Kuwata, Masato Katahira
    • Organizer
      The 10th Korea-Japan Bilateral Symposium on Biological NMR
    • Place of Presentation
      ソウル大学(ソウル、韓国)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Book] Encyclopedia of Biophysics, Introduction to Nucleic Acids NMR2013

    • Author(s)
      Katahira, M. and Mashima, T.
    • Total Pages
      10
    • Publisher
      Springer
    • Related Report
      2013 Annual Research Report
  • [Book] 実験医学, リボスイッチ及び抗プリオン活性を示すRNAアプタマーの動作メカニズム2013

    • Author(s)
      片平正人
    • Total Pages
      7
    • Publisher
      羊土社
    • Related Report
      2013 Annual Research Report
  • [Remarks] 片平研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/bio/

    • Related Report
      2015 Annual Research Report 2014 Annual Research Report
  • [Remarks] 片平研究室

    • URL

      http://www.iae.kyoto-u.ac.jp/bio/

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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