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Kinetic analysis of the self-digestion effect on the thermal stability of proteases

Research Project

Project/Area Number 25400426
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Biological physics/Chemical physics/Soft matter physics
Research InstitutionNagaoka University of Technology

Principal Investigator

Kidokoro Shun-ichi  長岡技術科学大学, 工学研究科, 教授 (80195320)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2013: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Keywords蛋白質分解酵素 / 速度論的安定性 / 自己失活 / 熱測定 / 速度定数 / 1次反応 / 2次反応 / 活性化エンタルピー / thermolysin / 立体構造変化 / savinase / 反応速度定数 / カルシウム濃度 / 酵素濃度 / タンパク質分解酵素
Outline of Final Research Achievements

Although the kinetic stability of protease was traditionally analyzed by considering only the conformational change, a new kinetic model has been constructed with considering the self-digestion, Based on this method, the global analysis for the calorimetric data of proteases under various experimental conditions has been developed where the kinetic parameters were determined precisely. Using this method, kinetic stability of a metalloprotease, thermolysin (TLN) and a serine protease, savinase (SAV) has been analyzed successfully, and the effect of the inhibitor on the stability of TLN, and the effect of Ca ion on the stability of SAV, have been evaluated. Furthermore, the method has benn successfully applied to evaluate the kinetic stability of non-protease proteins consisting of multi-unit, such as calmodulin and amylomaltase, indicating the versatility of the method.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (26 results)

All 2016 2015 2014 2013 Other

All Int'l Joint Research (1 results) Journal Article (14 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 11 results,  Open Access: 3 results,  Acknowledgement Compliant: 3 results) Presentation (11 results) (of which Invited: 1 results)

  • [Int'l Joint Research] チュラロンコン大学(タイ)

    • Related Report
      2015 Annual Research Report
  • [Journal Article] Similarity and differences in the physicochemical properties of lactate dehydrogenase isozymes from different tissues of Japanese sandfish Arctoscopus japonicus2016

    • Author(s)
      Sugawara K, Nakagawa M, Yonezawa M, Nakamura S, Kidokoro S, Wakui H, Nunomura W
    • Journal Title

      Fish. Sci.

      Volume: 82 Issue: 3 Pages: 519-527

    • DOI

      10.1007/s12562-016-0972-1

    • NAID

      40020863358

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutagenesis for improvement of activity and thermostability of amylomaltase from Corynebacterium glutamicum2016

    • Author(s)
      Nimpiboon P., Kaulpiboon J., Krusong K., Nakamura S., Kidokoro S., Pongsawasdi P.
    • Journal Title

      Int. J. Biol. Macromol.

      Volume: S0141-8130 Pages: 30154-4

    • DOI

      10.1016/j.ijbiomac.2016.02.022

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] IATC, DSC and PPC analysis of reversible and multi-state structural transition of cytochrome c2016

    • Author(s)
      Kidokoro S, Nakamura S
    • Journal Title

      Method. Enzymol.

      Volume: 567 Pages: 391-412

    • DOI

      10.1016/bs.mie.2015.08.002

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The impact of a single-nucleotide mutation of bgl2 on cellulose induction in a Trichoderma reesei mutant2016

    • Author(s)
      Shida Y, Yamaguchi K, Nitta M, Nakamura A, Takahashi M, Kidokoro S, Mori K, Tashiro K, KuharaS, Matsuzawa T, Yaoi K, Sakamoto Y, Tanaka N, Morikawa Y, Ogasawara W
    • Journal Title

      Biotechnol. Biofuel

      Volume: 8:230 Issue: 1 Pages: 1-18

    • DOI

      10.1186/s13068-015-0420-y

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of amylomaltase from Thermus filiformis and mutation to increase in alkaline and thermo-stability2016

    • Author(s)
      Kaewpathomsri P, Takahashi Y, Nakamura S, Kaulpiboon J, Kidokoro S, Murakami S, Krusong K, Pongsawasdi P
    • Journal Title

      Process. Biochem.

      Volume: 50 Issue: 11 Pages: 1814-1824

    • DOI

      10.1016/j.procbio.2015.08.006

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Analysis and control of protein crystallization using short peptide tags that change solubility without structure, thermal stability and function2015

    • Author(s)
      Islam M, Nakamura S, Noguchi K, Yohda M, Kidokoro S, Kuroda Y
    • Journal Title

      Crystal Growth Design

      Volume: 15 Issue: 6 Pages: 2703-2711

    • DOI

      10.1021/acs.cgd.5b00010

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Yamaguchi A, Niimura N, Nakamura S, Kidokoro S, Chatake T, Yokoyama T, Tanaka I2015

    • Author(s)
      Yamaguchi A, Niimura N, Nakamura S, Kidokoro S, Chatake T, Yokoyama T, Tanaka I
    • Journal Title

      JPS Conf. Proc.

      Volume: 8:03308 Pages: 1-16

    • DOI

      10.7566/jpscp.8.033008

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Analysis and Control of Protein Crystallization Using Short Peptide2015

    • Author(s)
      Islam MM, Nakamura S, Noguchi K, Yohda M, Kidokoro S, Kuroda Y
    • Journal Title

      Cristal Growth & Design

      Volume: 印刷中

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] ATP Binding and Hydration State Analyses of DAPK:2015

    • Author(s)
      Yamaguchi A, Niimura N, Nakamura S, Kidokoro S, Chatake T, Yokoyama T, Tanaka I
    • Journal Title

      JPS Conference Proceedings

      Volume: 印刷中

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Unique structural changes in calcium-bound calmodulin upon interaction with protein 4.1R FERM domain: novel insights into the calcium-dependent regulation of 4.1R FERM domain binding to membrane proteins by calmodulin2014

    • Author(s)
      Nunomura W, Isozumi N, Nakamura S, Jinbo Y, Sasakura D, Ohki S, Kidokoro S, Wakui H, Takakuwa Y
    • Journal Title

      Cell Biochemistry and Biophysics

      Volume: 69 Pages: 7-19

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] タンパク質の熱力学的安定性と分子機能の精密熱量測定2014

    • Author(s)
      城所俊一
    • Journal Title

      熱測定

      Volume: 41 Pages: 2-9

    • Related Report
      2013 Research-status Report
  • [Journal Article] Unique structural changes in calcium-bound calmodulin upon interaction with protein 4.1R FERM domain: novel insights into the calcium-dependent regulation of 4.1R FERM domain binding to membrane proteins by calmodulin2014

    • Author(s)
      Nunomura W, Isozumi N, Nakamura S, Jinbo Y, Sasakura D, Ohki S, Kidokoro S, Wakui H, Takakuwa Y
    • Journal Title

      Cell Biochem. Biophys.

      Volume: 69 Issue: 1 Pages: 7-19

    • DOI

      10.1007/s12013-013-9758-6

    • Related Report
      2013 Research-status Report
  • [Journal Article] Constant Enthalpy Change Value during Pyrophosphate Hydrolysis within the Physiological Limits of NaCL2013

    • Author(s)
      Wakai S, Kidokoro S, Masaki K, Nakasone K, Sambongi Y
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Issue: 41 Pages: 29247-29251

    • DOI

      10.1074/jbc.m113.502963

    • NAID

      120006811252

    • Related Report
      2013 Research-status Report
  • [Journal Article] A New Multi-Binding Model for Isothermal Titration Calorimetry Analysis of the Interaction between Adenosine 5’-Triphosphate and Magnesium Ion2013

    • Author(s)
      Nakamura S, Koga S, Shibuya N, Seo K, Kidokoro S
    • Journal Title

      Thermochim. Acta

      Volume: 563 Pages: 82-89

    • DOI

      10.1016/j.tca.2013.04.008

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] マルチドメイン蛋白質の不可逆熱転移の速度論的解析2015

    • Author(s)
      中村成芳、中川瑞希、米澤美香、涌井秀樹、布村渉、城所俊一
    • Organizer
      熱測定討論会
    • Place of Presentation
      東京電機大学 埼玉鳩山キャンパス
    • Year and Date
      2015-10-08
    • Related Report
      2015 Annual Research Report
  • [Presentation] 2本のジスルフィド結合を導入した低温ショック蛋白質変異体の結合性と安定性2015

    • Author(s)
      中澤晶子、森谷圭介、中村成芳、志田洋介、小笠原渉、城所俊一
    • Organizer
      熱測定討論会
    • Place of Presentation
      東京電機大学 埼玉鳩山キャンパス
    • Year and Date
      2015-10-08
    • Related Report
      2015 Annual Research Report
  • [Presentation] 低温ショック蛋白質のcavity内アミノ酸置換が 安定性や1本鎖DNAとの結合性に与える影響2015

    • Author(s)
      土井淳, 中村成芳, 志田洋介, 小笠原渉, 城所俊一
    • Organizer
      熱測定討論会
    • Place of Presentation
      東京電機大学 埼玉鳩山キャンパス
    • Year and Date
      2015-10-08
    • Related Report
      2015 Annual Research Report
  • [Presentation] 圧力摂動熱量測定によるシトクロムcのモルテングロビュール状態2015

    • Author(s)
      中村成芳、城所俊一
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      あわぎんホール(徳島市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ウイルス由来スーパーファミリー1ヘリカーゼのNTP加水分解の評価2015

    • Author(s)
      福嶋 大智,瀬尾 和聖,城所 俊一,加藤 悦子
    • Organizer
      日本蛋白質科学会
    • Place of Presentation
      あわぎんホール(徳島市)
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] 低カルシウム濃度条件のsavinaseの速度論的安定性解析2014

    • Author(s)
      越智敬太、城所俊一
    • Organizer
      第50回記念熱測定討論会
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 蛋白質の熱転移における可逆的なオリゴマー形成過程の熱力学的解析2014

    • Author(s)
      中村成芳、Mohammad M Islam, 和智友香、清水凌、黒田裕、城所俊一
    • Organizer
      第50回記念熱測定討論会
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 高い安定性と結合性とをめざした低温ショック蛋白質ジスルフィド結合導入変異体の熱量測定2014

    • Author(s)
      森谷圭介、志田洋介、小笠原渉、城所俊一
    • Organizer
      第50回記念熱測定討論会
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2014-09-28 – 2014-09-30
    • Related Report
      2014 Research-status Report
  • [Presentation] 蛋白質分解酵素の速度論的安定性の熱測定による評価2013

    • Author(s)
      城所俊一、永田彰宏、越智敬太
    • Organizer
      第51回日本生物物理学会年会
    • Place of Presentation
      京都国際会館
    • Related Report
      2013 Research-status Report
  • [Presentation] タンパク質の熱力学的安定性と分子機能の精密熱量測定2013

    • Author(s)
      城所俊一
    • Organizer
      第49回熱測定討論会
    • Place of Presentation
      千葉工業大学
    • Related Report
      2013 Research-status Report
  • [Presentation] Savinaseの熱変性の自己消化を考慮した速度論的解析2013

    • Author(s)
      越智敬太、永田彰宏、城所俊一
    • Organizer
      第49回熱測定討論会
    • Place of Presentation
      千葉工業大学
    • Related Report
      2013 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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