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Evaluation of intracanal biota using metagenomics - a new strategy for endodontic treatment

Research Project

Project/Area Number 25462945
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Conservative dentistry
Research InstitutionTohoku University

Principal Investigator

YAMAKI KEIKO  東北大学, 歯学研究科(研究院), 助教 (90182419)

Co-Investigator(Kenkyū-buntansha) SATO TAKUICHI  東北大学, 大学院歯学研究科, 講師 (10303132)
MAYANAGI GEN  東北大学, 大学院歯学研究科, 助教 (10451600)
SHIMAUCHI HIDETOSHI  東北大学, 大学院歯学研究科, 名誉教授 (70187425)
Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords歯内治療学 / 口腔細菌 / 根尖性歯周炎 / PCR法 / 16S rRNA / 嫌気性菌 / メタゲノム解析 / 根管内細菌叢 / 16s ribosomal RNA / PCR / 感染根管 / 16S ribosomal RNA
Outline of Final Research Achievements

Intracanal microflora associated with apical periodontitis was investigated. Under informed consent of patients, dentin samples were collected and analyzed using two rapid microbial cell counters, anaerobic culture, and PCR targeting 16S rRNA genes. Bacterial species found from endodontically suffering canals showed a great diversity in both quality and quantity. Mechanical enlargement of the root canal combined with chemical disinfection could effectively reduce the pre-dominantly anaerobic pathogen. Propionibacterium sp. and Olsenella sp. were frequently recovered in contrast to previous reports. Evaluating the difference in bacterial profile between oral cavity and root canal through metagenomics could lead to a new strategy for diagnosis and treatment of apical periodontitis.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (30 results)

All 2016 2015 2014 2013 2011 Other

All Journal Article (13 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 13 results,  Open Access: 9 results,  Acknowledgement Compliant: 5 results) Presentation (14 results) (of which Int'l Joint Research: 4 results,  Invited: 1 results) Book (3 results)

  • [Journal Article] Profiling subgingival microbiota of plaque biofilms in the elderly.2016

    • Author(s)
      Abiko Y, Sato T, Sakashita R, Tomida J, Kawamura Y, Takahashi N
    • Journal Title

      J Oral Biosci

      Volume: 58 Issue: 2 Pages: 62-65

    • DOI

      10.1016/j.job.2015.12.002

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] PCR-dipstick DNA chromatography for profiling of a subgroup of caries-associated bacterial species in plaque from healthy coronal surfaces and periodontal pockets.2016

    • Author(s)
      Tian L, Sato T, Niwa K, Kawase M, Mayanagi G, Washio J, Takahashi N:
    • Journal Title

      Biomed Res

      Volume: 37 Pages: 29-36

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Oral malodorous gases and oral microbiota: From halitosis to carcinogenesis.2015

    • Author(s)
      Tanda N, Hoshikawa Y, Ishida N, Sato T, Takahashi N, Hosokawa R, Koseki T
    • Journal Title

      J Oral Biosci

      Volume: 57 Issue: 4 Pages: 175-178

    • DOI

      10.1016/j.job.2015.05.004

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] <i>Porphyromonas bronchialis</i> sp. nov. Isolated from Intraoperative Bronchial Fluids of a Patient with Non-Small Cell Lung Cancer2015

    • Author(s)
      T. Sato, J. Tomida, T. Naka, N. Fujiwara, A. Hasegawa, Y. Hoshikawa, J. Matsuyama, N. Ishida, T. Kondo, K. Tanaka, N. Takahashi, Y. Kawamura
    • Journal Title

      The Tohoku Journal of Experimental Medicine

      Volume: 237 Issue: 1 Pages: 31-37

    • DOI

      10.1620/tjem.237.31

    • NAID

      130005094770

    • ISSN
      0040-8727, 1349-3329
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microbiota profiling of bronchial fluids of patients with pulmonary carcinoma2015

    • Author(s)
      Ishida N, Sato T, Hoshikawa Y, Tanda N, Sasaki K, Kondo T, Takahashi N
    • Journal Title

      J Oral Biosci

      Volume: 57 Issue: 2 Pages: 110-117

    • DOI

      10.1016/j.job.2014.11.001

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Porphyromonas pogonae sp. nov., an anaerobic but low concentration oxygen adapted coccobacillus isolated from lizards (Pogona vitticeps) or human clinical specimens, and emended description of the genus Porphyromonas Shah and Collins 19882015

    • Author(s)
      Y. Kawamura, S. Kuwabara, S.A. Kania, H. Kato, M. Hamagishi, N. Fujiwara, T. Sato, J. Tomida, K. Tanaka, D.A. Bemis
    • Journal Title

      Syst. Appl. Microbiol.

      Volume: 38 Issue: 2 Pages: 104-109

    • DOI

      10.1016/j.syapm.2014.11.004

    • Related Report
      2015 Annual Research Report 2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Responses of infected dental pulp to αTCP containing antimicrobials in rat molars.2015

    • Author(s)
      Sato T, Kenmotsu S, Nakakura-Ohshima K, Takahashi N, Ohshima H.
    • Journal Title

      Arch Histol Cytol

      Volume: 75

    • NAID

      130005087018

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Rapid and sensitive PCR-dipstick DNA chromatograohy for multiplex analysis of oral microbiota.2014

    • Author(s)
      Tian L, Sato T, Niwa K, Kawase M, Tanner ACR, Takahashi N.
    • Journal Title

      BioMed Res Int

      Volume: 2014 Pages: 180323-180323

    • DOI

      10.1155/2014/180323

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Detection and identification of oral anaerobes from intraoperative bronchial fluids of patients with pulmonary carcinoma2014

    • Author(s)
      Hasegawa A, Sato T, Hoshikawa Y, Ishida N, Tanda N, Kawamura Y, Kondo T, Takahashi N
    • Journal Title

      Microbiol Immunol

      Volume: 58(in press) Issue: 7 Pages: 375-381

    • DOI

      10.1111/1348-0421.12157

    • NAID

      40020130159

    • Related Report
      2014 Research-status Report 2013 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Microbiologically induced corrosive properties of the titanium surface2014

    • Author(s)
      Fukushima A, Mayanagi G, Nakajo K, Sasaki K, Takahashi N
    • Journal Title

      J Dent Res

      Volume: 93(5) Issue: 5 Pages: 525-529

    • DOI

      10.1177/0022034514524782

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Effect of fluoride-releasing restorative materials on bacteria-induced pH fall at the bacteria -material interface : An in vitro model study2014

    • Author(s)
      Mayanagi G, Igarashi K, Washio J, Domon-Tawaraya H, Takahashi N
    • Journal Title

      J Dent

      Volume: 42(1) Issue: 1 Pages: 15-20

    • DOI

      10.1016/j.jdent.2013.11.006

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Fluoride-sensitivity of growth and acid production of oral Actinomyces : comparison with oral Streptococcus2013

    • Author(s)
      Kawashima J, Nakajo K, Washio J, Mayanagi G, Shimauchi H, Takahashi N
    • Journal Title

      Microbiol Immunol

      Volume: 57(12) Issue: 12 Pages: 797-804

    • DOI

      10.1111/1348-0421.12098

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] <b>Responses of infected dental pulp to αTCP-containing antimicrobials in rat molars</b>2011

    • Author(s)
      Sato T, Kenmotsu S, Nakakura-Ohshima K, Takahashi N, Ohshima H
    • Journal Title

      Archives of Histology and Cytology

      Volume: 73 Issue: 4+5 Pages: 165-175

    • DOI

      10.1679/aohc.73.165

    • NAID

      130005087018

    • ISSN
      0914-9465, 1349-1717
    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] PCR-dipstick DNA chromatography for multiplex and semi-quantitative analysis of plaque biofilm microbiota.2016

    • Author(s)
      Tian L, Sato T, Niwa K, Kawase M, Mayanagi G, Abiko Y, Washio J, Takahashi N:
    • Organizer
      Innovative Research for Biosis-Abiosis Intelligent Interface Symposium: The 6th International Symposium for Interface Oral Health Science
    • Place of Presentation
      Sendai, Japan
    • Year and Date
      2016-01-18
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] メタボローム解析:口腔疾患の発生機序解明への新たなアプローチ2015

    • Author(s)
      鷲尾純平、小川珠生、北村淳、森島浩允、田玲錫、石黒和子、真柳弦、安彦友希、佐藤拓一、高橋信博:
    • Organizer
      第68回東北大学歯学会
    • Place of Presentation
      仙台
    • Year and Date
      2015-12-11
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Malodorous gases from saliva of perioperative patients of lung resection.2015

    • Author(s)
      Tanda N, Ishida N, Takahashi N, Sato T, Hoshikawa Y, Hosokawa R, Koseki T:
    • Organizer
      The 63rd Annual Meeting of the Japanese Association for Dental Research
    • Place of Presentation
      Fukuoka, Japan
    • Year and Date
      2015-10-31
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 嫌気性無芽胞グラム陽性桿菌Olsenella spp.の薬剤感受性2015

    • Author(s)
      田中香お里、佐藤拓一、八巻恵子、林将大、河村好章:
    • Organizer
      第63回日本化学療法学会西日本支部総会
    • Place of Presentation
      奈良
    • Year and Date
      2015-10-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] Profiling of microbiota from infected root canals with and without marginal leakage using anaerobic culture and molecular techniques (16S rRNA gene sequencing)2015

    • Author(s)
      Sato T, Yamaki K, Kawamura Y, Tomida J, Tian L, Ishida N, Takeuchi Y, Hashimoto K, Abiko Y, Matsuyama J, Takahashi N:
    • Organizer
      The 25th European Congress of Clinical Microbiology and Infectious Diseases
    • Place of Presentation
      Copenhagen, Denmark
    • Year and Date
      2015-04-28
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Antimicrobial susceptibility profiles of Helicobacter cinaedi strains isolated from patients in Japan.2015

    • Author(s)
      Tomida J, Morita Y, Sato T, Kawamura Y:
    • Organizer
      The 25th European Congress of Clinical Microbiology and Infectious Diseases
    • Place of Presentation
      Copenhagen, Denmark
    • Year and Date
      2015-04-25
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cultivable anaerobic microbiota of infected root canals with/without marginal leakage.2015

    • Author(s)
      Yamaki K, Sato T, Ishida N, Tian L, Hashimoto K, Shimauchi H,Takahashi N.
    • Organizer
      The 93rd IADR General Session & Exhibition
    • Place of Presentation
      Boston, USA
    • Year and Date
      2015-03-11 – 2015-03-14
    • Related Report
      2014 Research-status Report
  • [Presentation] PCR-dipstick DNA chromatography for semi-quantitative alalysis of oral microbiota.2015

    • Author(s)
      Tian L, Sato T, Niwa K, Mayanagi G, Kawase M, Tanner ACR, Takahashi N.
    • Organizer
      The 93rd IADR General Session & Exhibition
    • Place of Presentation
      Boston, USA
    • Year and Date
      2015-03-11 – 2015-03-14
    • Related Report
      2014 Research-status Report
  • [Presentation] A novel method for oral microbiota analysis: PCR-dipstick DNA chromtatography.2014

    • Author(s)
      Tian L, Sato T, Niwa K, Mayanagi G, Kawase M, Tanner ACR, Takahashi N.
    • Organizer
      China-Japan-Korea Dental Science Symposium
    • Place of Presentation
      Dalian, China
    • Year and Date
      2014-11-08 – 2014-11-09
    • Related Report
      2014 Research-status Report
  • [Presentation] Responses of infected dental pulp to capping with a mixture of three antibacterial drugs (3Mix) or calcium hydroxide cement in mouse molars.2014

    • Author(s)
      Quispe-Salcedo A, Sato T, Matsuyama J, Ohshima H.
    • Organizer
      第56回歯科基礎医学会学術大会
    • Place of Presentation
      福岡
    • Year and Date
      2014-09-27
    • Related Report
      2014 Research-status Report
  • [Presentation] PCR-dipstick DNA chromtatography for multiplex analysis of oral microbiota.2014

    • Author(s)
      Tian L, Sato T, Niwa K, Mayanagi G, Yamaki K, Kawase M, Tanner ACR, Takahashi N.
    • Organizer
      第56回歯科基礎医学会学術大会サテライトシンポジウム
    • Place of Presentation
      福岡
    • Year and Date
      2014-09-25
    • Related Report
      2014 Research-status Report
  • [Presentation] Porphyromonas pogonae sp. nov., a strong beta-hemolytic, low concentration oxygen tolerarnt species from lizards and human clinical specimens.2014

    • Author(s)
      Kawamura Y, Kuwabara  S, Kania SA, Kato H, Hamagishi M, Hayakawa S, Fujiwara N, Naka T, Sato T, Tomida J, Tanaka K, Yoshida Y, Morita Y, Bemis DA.
    • Organizer
      The 114th General Meetings of ASM
    • Place of Presentation
      Boston, USA
    • Year and Date
      2014-05-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Profiling of oral biofilm microbiota utilizing molecular biological methods.

    • Author(s)
      Sato T, Kawamura Y, Yamaki K, Shimauchi H, Takahashi N.
    • Organizer
      Peking-Tohoku Dental Symposium: Innovative Research for Biosis-Abiosis Intelligent Interface.
    • Place of Presentation
      Beijing, China
    • Related Report
      2013 Research-status Report
  • [Presentation] Molecular biological profiling of oral biofilm: Quantitative and qualitative analyses

    • Author(s)
      Sato T, Kawamura Y, Ishida N, Yamaki K, Matsuyama J, Takahashi N.
    • Organizer
      The 2nd IADR-APR (Asia Pacific Region)
    • Place of Presentation
      Bangkok, Thailand
    • Related Report
      2013 Research-status Report
  • [Book] Oral microbiota in crevices around dental implants: profiling of oral biofilm. In: Interface Oral Health Science 2014: Innovative Research on Biosis-Abiosis Intelligent Interface.2015

    • Author(s)
      Sato T, Kawamura Y, Yamaki K, Ishida N, Tian L, Takeuchi Y, Hashimoto K, Abiko Y, Mayanagi G, Washio J, Matusyama J, Takahashi N:
    • Total Pages
      351
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Book] Preventing aspiration pneumonia for the elderly: a review focused on the impact of the consistency of food substances. In: Interface Oral Health Science 2014: Innovative Research on Biosis-Abiosis Intelligent Interface.2015

    • Author(s)
      Sakashita R, Takami M, Ono H, Nishihira T, Sato T, Hamada M:
    • Total Pages
      351
    • Publisher
      Springer
    • Related Report
      2015 Annual Research Report
  • [Book] Sasaki・Suzuki・Takahashi Eds. Interface Oral Health Science 2014. Innovative research on biosis-abiosis intelligent interface.2015

    • Author(s)
      Sato T, Kawamura Y, Yamaki K, Ishida N, Takeuchi Y, Hashimoto K, Abiko Y, Mayanagi G, Washio J, Matsuyama J, Takahashi N.
    • Total Pages
      351
    • Publisher
      Springer, Tokyo
    • Related Report
      2014 Research-status Report

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Published: 2014-07-25   Modified: 2019-07-29  

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