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Identification of long non-coding RNA associated protein complexes using mouse artificial chromosome

Research Project

Project/Area Number 25640114
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionTottori University

Principal Investigator

KUGOH HIROYUKI  鳥取大学, 医学(系)研究科(研究院), 教授 (40225131)

Research Collaborator 大平 嵩人  
砂村 直洋  
稲岡 大悟  
Project Period (FY) 2013-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2013: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordslong noncoding RNA / Xist / LIT1/KCNQ1OT1 / chromosome / MAC / X染色体不活化 / LIT1 / DNA/RNA/タンパク複合体解析 / 人工染色体 / 長鎖非コードRNA / 免疫沈降 / XIST
Outline of Final Research Achievements

In this study, we established NIH/3T3 and HeLa cells containing MAC and human chromosome 21 that express Xist RNA by a doxycycline (Dox). Xist RNA territories were observed both on MAC and human chromosome 21 by Dox-dependent Xist expression. However, genes that contain selectable marker located on MAC were expressed despite on cis-accumulation of Xist RNA on MAC. On the other hand, it was observed accumulation of H3K27me3 on human chromosome 21 expressing Xist RNA. These results suggest that the establishment of XCI by Xist RNA may play an important role in a special chromatin region as elements for cis-silencing on chromosome.In addition, we developed tool for recovery of human chromosome 21 expressing Xist RNA using FLAG/dCas9-EGFP.

Report

(3 results)
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Research-status Report
  • Research Products

    (7 results)

All 2015 2014 2013

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (4 results) (of which Invited: 1 results) Book (1 results)

  • [Journal Article] PITX1 is reliable biomarker for predicting prognosis in patients with oral epithelial dysplasia.2014

    • Author(s)
      Nakabayashi M, Osaki M, Kodani I, Okada F, Ryoke K, Oshimura M, Ito H, and Kugoh H
    • Journal Title

      Oncology Letters

      Volume: 7 Pages: 750-754

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Journal Article] Decreased PITX1 gene expression in human cutaneous mahgnant melanoma and its clinicopathological significance.2013

    • Author(s)
      Osaki M, Chinen H, Ybshida Y, Ohhira T, Sunamura N, Yamamoto O, Ito H, Oshimura M, Kugoh H.
    • Journal Title

      European Journal of Dermatology

      Volume: 23巻 Issue: 3 Pages: 344-349

    • DOI

      10.1684/ejd.2013.2021

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Molecular mechanism of cancer development by long non-coding RNA2015

    • Author(s)
      Hiroyuki Kugoh
    • Organizer
      Asian Chromosome Collquium (ACC5)
    • Place of Presentation
      BANGKOK (Thailand)
    • Year and Date
      2015-04-30 – 2015-05-01
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Identification of long non-coding RNA Xistassociated protein complexes using mouse artificial chromosome (MAC)2015

    • Author(s)
      Naohiro Sunamura, Digo Inaoka, Takahito Ohhira, Yuji Nakayama, Mitsuo Oshimura, Hiroyuki Kugoh
    • Organizer
      Asian Chromosome Collquium (ACC5)
    • Place of Presentation
      BANGKOK (Thailand)
    • Year and Date
      2015-04-30 – 2015-05-01
    • Related Report
      2014 Annual Research Report
  • [Presentation] 低酸素条件における大腸癌由来細胞株でのEMASTの発生誘導2013

    • Author(s)
      有田道恒, 久郷裕之, 近藤元就, 逸見仁道
    • Organizer
      日本癌学会学術総会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Related Report
      2013 Research-status Report
  • [Presentation] PITX1発現はヒト口腔異形成の悪性化を予測するマーカーとなりうる2013

    • Author(s)
      80. 砂村直洋, 中林基, 尾崎充彦, 小谷勇, 押村光雄, 岡田太, 領家和男, 井藤久雄, 久郷裕之
    • Organizer
      日本癌学会学術総会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Related Report
      2013 Research-status Report
  • [Book] 長鎖ノンコーディングRNAによる染色体ドメインレベルの遺伝子発現制御2015

    • Author(s)
      砂村直洋 久郷裕之
    • Total Pages
      10
    • Publisher
      秀潤社
    • Related Report
      2014 Annual Research Report

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Published: 2014-07-25   Modified: 2019-07-29  

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