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Basic Research of a comprehensive metabolic control system, the control engineering of biological clock, connecting the entire hierarchy from the cell to the individual

Research Project

Project/Area Number 25712029
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypePartial Multi-year Fund
Research Field Agricultural environmental engineering/Agricultural information engineering
Research InstitutionOsaka Prefecture University

Principal Investigator

Fukuda Hirokazu  大阪府立大学, 工学(系)研究科(研究院), 准教授 (90405358)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥25,610,000 (Direct Cost: ¥19,700,000、Indirect Cost: ¥5,910,000)
Fiscal Year 2015: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2014: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2013: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Keywordsアグリバイオインフォマティックス / 数理モデル / オミクス解析 / 農業工学 / 植物工場 / 体内時計 / 網羅的発現解析
Outline of Final Research Achievements

In recent years, because the types of production in the plant factory is tend to be increasing, the study of high-performance plantsthat secondary metabolisms is more important is expanded rapidly. Therefore, the metabolic molecular information and environmental conditioning engineering utilizing intracellular studies of engineering metabolic control with mathematical models, has come to be emphasized. In this study, we focus on the "biological clock" that research is progressing. Omics analysis including RNA-Seq analysis and metabolite analysis, and new experimental system that is possible to give any light conditions to any site using a scanning laser lighting have been developed. As a result, a different biological clock in the growth organs and the photosynthetic apparatus could be controlled independently. The creation of the theoretical basis and technology for connecting the entire hierarchy from the cell to the individual have also been performed.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Annual Research Report
  • 2013 Annual Research Report
  • Research Products

    (19 results)

All 2016 2015 2014 Other

All Journal Article (9 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 9 results,  Acknowledgement Compliant: 8 results,  Open Access: 4 results) Presentation (6 results) (of which Invited: 1 results) Remarks (4 results)

  • [Journal Article] Detection of Diurnal Variation of Tomato Transcriptome through the Molecular Timetable Method in a Sunlight-type Plant Factory2016

    • Author(s)
      Takanobu Higashi, Yusuke Tanigaki, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo and Hirokazu Fukuda
    • Journal Title

      Frontiers in Plant Science

      Volume: 7:87 Pages: 1-9

    • DOI

      10.3389/fpls.2016.00087

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] An Extended Mathematical Model for Reproducing the Phase Response of Arabidopsis thaliana Under Various Light Conditions.2015

    • Author(s)
      Takayuki Ohara, Hirokazu Fukuda, Isao T. Tokuda
    • Journal Title

      Journal of Theoretical Biology

      Volume: 382 Pages: 337-334

    • DOI

      10.1016/j.jtbi.2015.07.016

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Phase Response of the Arabidopsis thaliana Circadian Clock to Light Pulses of Different Wavelengths.2015

    • Author(s)
      Takayuki Ohara, Hirokazu Fukuda, Isao T. Tokuda
    • Journal Title

      Journal of Biological Rhythms

      Volume: 30 Issue: 2 Pages: 95-103

    • DOI

      10.1177/0748730415576426

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Entrainment of Cellular Circadian Rhythms in Lactuca sativa L. Leaf by Spatially Controlled Illuminations2015

    • Author(s)
      Naoki Seki, Kazuya Ukai, Takanobu Higashi and Hirokazu Fukuda
    • Journal Title

      Journal of Biosensors & Bioelectronics

      Volume: 6 Issue: 04 Pages: 1000186-1000186

    • DOI

      10.4172/2155-6210.1000186

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Transcriptome analysis of plant hormone-related tomato (Solanum lycopersicum) genes in a sunlight-type plant factory2015

    • Author(s)
      Yusuke Tanigaki, Takanobu Higashi, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo and Hirokazu Fukuda
    • Journal Title

      PLoS ONE

      Volume: 10 Issue: 12 Pages: 1-18

    • DOI

      10.1371/journal.pone.0143412

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Evaluation of Growth under Non-24 h Period Lighting Conditions in <i>Lactuca sativa</i> L.2015

    • Author(s)
      akanobu Higashi, Shuhei Nishikawa, Nobuya Okamura and *Hirokazu Fukuda
    • Journal Title

      Environment Control in Biology

      Volume: 53 Issue: 1 Pages: 7-12

    • DOI

      10.2525/ecb.53.7

    • NAID

      130004944230

    • ISSN
      1880-554X, 1883-0986
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Phase Response of the Arabidopsis thaliana Circadian2015

    • Author(s)
      Takayuki Ohara, Hirokazu Fukuda, Isao T. Tokuda
    • Journal Title

      Journal of Biological Rhythms

      Volume: 30 Pages: 95-103

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Collective Synchronization of Circadian Rhythms in Germinating Plants by Temperature Fluctuations2014

    • Author(s)
      Ryuta Udo, Shogo Moriyuki, Kazuya Ukai, Hirokazu Fukuda
    • Journal Title

      Transactions of the Japan Society of Refrigerating and Air Conditioning Engineers

      Volume: 31 Issue: 3 Pages: 359-365

    • DOI

      10.11322/tjsrae.14-26PF_OA

    • NAID

      130004685678

    • ISSN
      1344-4905, 2185-789X
    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Characterization of Circadian Rhythms Through a Bioluminescence Reporter Assay in <b><i>Lactuca sativa</b></i> L.2014

    • Author(s)
      T. Higashi, A. Kamitamari, N. Okamura, K. Ukai, K. Okamura, T. Tezuka, H. Fukuda
    • Journal Title

      Environment Control in Biology

      Volume: 52 Issue: 1 Pages: 21-27

    • DOI

      10.2525/ecb.52.21

    • NAID

      130003395215

    • ISSN
      1880-554X, 1883-0986
    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Presentation] RNA-seqとLC-Orbitrap-MSによる大葉の概日リズム解析.2014

    • Author(s)
      福田弘和,東 孝信,有働龍太,三浦孝江
    • Organizer
      日本生物環境工学会 2014東京大会
    • Place of Presentation
      明治大学 駿河台キャンパス
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 時系列RNA-seqデータを用いたトマトにおける体内時刻の推定.2014

    • Author(s)
      東 孝信,高山弘太郎,福田弘和
    • Organizer
      日本生物環境工学会 2014東京大会
    • Place of Presentation
      明治大学 駿河台キャンパス
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] "フリルアイス発芽初期のクロロフィル蛍光にみられる概日リズムの振動性解析.2014

    • Author(s)
      守行正悟,福田弘和
    • Organizer
      日本生物環境工学会 2014東京大会
    • Place of Presentation
      明治大学 駿河台キャンパス
    • Year and Date
      2014-09-09 – 2014-09-11
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物における概日時計細胞集団の光による制御.2014

    • Author(s)
      福田 弘和
    • Organizer
      第36回光医学・光生物学会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-07-25
    • Related Report
      2014 Annual Research Report
  • [Presentation] 植物概日時計における振動子集団の外力応答2014

    • Author(s)
      福田 弘和
    • Organizer
      "電子情報通信学会 第10回複雑コミュニケーションサイエンス時限研究会
    • Place of Presentation
      大阪大学
    • Year and Date
      2014-05-19
    • Related Report
      2014 Annual Research Report
  • [Presentation] 時計遺伝子研究の太陽光植物工場への適用可能性2014

    • Author(s)
      福田 弘和
    • Organizer
      日本学術会議公開シンポジウム「太陽光植物工場の高精度環境調節を可能にする植物生体情報計測」
    • Place of Presentation
      日本学術会議(東京都)
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Remarks] 大阪府立大学大学院 工学研究科 バイオプロダクション工学研究室

    • URL

      http://www.bioproduction-opu.info/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪府立大学大学院 工学研究科 バイオプロダクション工学研究室

    • URL

      http://www.me.osakafu-u.ac.jp/bioproduction/

    • Related Report
      2014 Annual Research Report
  • [Remarks] 大阪府立大学大学院工学研究科 機械系専攻 バイオプロダクション工学研究グループ

    • URL

      http://www.me.osakafu-u.ac.jp/bioproduction/

    • Related Report
      2013 Annual Research Report
  • [Remarks] 大阪府立大学大学院工学研究科 機械系専攻 バイオプロダクション工学研究グループ

    • URL

      http://www.bioproduction-opu.info/

    • Related Report
      2013 Annual Research Report

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Published: 2013-05-21   Modified: 2019-07-29  

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