• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Wide-coverage event extraction from biomedical texts

Research Project

Project/Area Number 25730129
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Intelligent informatics
Research InstitutionToyota Technological Institute (2014-2015)
The University of Tokyo (2013)

Principal Investigator

Miwa Makoto  豊田工業大学, 工学(系)研究科(研究院), 准教授 (00529646)

Project Period (FY) 2013-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2013: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Keywords事象抽出 / 複数コーパス / 半教師あり学習 / 教師なし学習 / 生命医学文献 / 高被覆
Outline of Final Research Achievements

Biomedical event extraction systems often employ supervised machine learning approaches to learn from an annotated corpus. Such systems, however, can only extract limited types of events due to the limited annotated information, and it is costly to annotate a large amount of texts to cover a wide variety of event types. To deal with these problems, we propose and evaluate a method to build a wide-coverage model from several corpora and a method to find annotation candidates from unannotated texts. We show that the learning from several corpora can improve the event extraction performance, and we also present the possibility to use unannotated texts in event extraction.

Report

(4 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • 2013 Research-status Report
  • Research Products

    (7 results)

All 2015 2014 2013 Other

All Journal Article (2 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 2 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (3 results) Remarks (2 results)

  • [Journal Article] Adaptable, High Recall, Event Extraction System with Minimal Configuration2015

    • Author(s)
      Makoto Miwa and Sophia Ananiadou
    • Journal Title

      BMC Bioinformatics

      Volume: 16, Suppl 10 Issue: S10

    • DOI

      10.1186/1471-2105-16-s10-s7

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Wide coverage biomedical event extraction using multiple partially overlapping corpora2013

    • Author(s)
      Makoto Miwa, Sampo Pyysalo, Tomoko Ohta and Sophia Ananiadou
    • Journal Title

      BMC Bioinformatics

      Volume: 14 Issue: 1 Pages: 175-175

    • DOI

      10.1186/1471-2105-14-175

    • Related Report
      2013 Research-status Report
    • Peer Reviewed
  • [Presentation] Modeling Joint Entity and Relation Extraction with Table Representation2014

    • Author(s)
      Makoto Miwa and Yutaka Sasaki
    • Organizer
      The 2014 Conference on Empirical Methods on Natural Language Processing
    • Place of Presentation
      Doha, Qatar
    • Year and Date
      2014-10-28
    • Related Report
      2014 Research-status Report
  • [Presentation] Comparable Study of Event Extraction in Newswire and Biomedical Domains2014

    • Author(s)
      Makoto Miwa, Paul Thompson, Ioannis Korkontzelos, and Sophia Ananiadou
    • Organizer
      The 25th International Conference on Computational Linguistics (COLING 2014)
    • Place of Presentation
      Dublin, Ireland
    • Year and Date
      2014-08-29
    • Related Report
      2014 Research-status Report
  • [Presentation] NaCTeM EventMine for BioNLP 2013 CG and PC tasks2013

    • Author(s)
      Makoto Miwa and Sophia Ananiadou
    • Organizer
      BioNLP Shared Task 2013 Workshop
    • Place of Presentation
      Sofia, Bulgaria
    • Related Report
      2013 Research-status Report
  • [Remarks] Event Mine Demonstrator

    • URL

      http://www.nactem.ac.uk/EventMine/demo.php

    • Related Report
      2015 Annual Research Report
  • [Remarks] PathText 2

    • URL

      http://www.nactem.ac.uk/pathtext2/demo/

    • Related Report
      2015 Annual Research Report

URL: 

Published: 2014-07-25   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi