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Dynamics analysis of biomokecules using fluorescence diamond nanoparticles

Research Project

Project/Area Number 26286028
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Nanobioscience
Research InstitutionOsaka University (2016)
Kyoto University (2014-2015)

Principal Investigator

Harada Yoshie  大阪大学, 蛋白質研究所, 教授 (10202269)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,120,000 (Direct Cost: ¥12,400,000、Indirect Cost: ¥3,720,000)
Fiscal Year 2016: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2015: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2014: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Keywordsナノバイオ / 生物物理学 / 生物物理
Outline of Final Research Achievements

We have developed a device and computer programs to measure and analyze ODMR spectra of NV centers in diamond based on an inverted fluorescence microscope, and succeeded in determining the precise orientation of each diamond nanoparticle by applying external magnetic fields sequentially in four inequivalent directions. Diamond nanoparticles were specifically labeled on the EGF receptor via anti-EGF receptor antibody in the cell membrane of A431 cells. By measuring the ODMR spectrum every few minutes and determining the orientation of the diamond nanoparticles, it has become possible to detect the movement of the EGF receptor, that is, the fluctuation motion of the cell membrane. From now on, we will develop this technology to measure various biomolecular dynamics.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (36 results)

All 2017 2016 2015 2014 Other

All Journal Article (14 results) (of which Peer Reviewed: 12 results,  Open Access: 10 results,  Acknowledgement Compliant: 3 results) Presentation (18 results) (of which Int'l Joint Research: 7 results,  Invited: 13 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Reversible morphological control of tubulin-encapsulating giant liposomes by hydrostatic pressure2016

    • Author(s)
      Hayashi M., Nishiyama M., Kazayama Y., Toyota T., Harada Y. & Takiguchi K.
    • Journal Title

      Langmuir

      Volume: 32 Issue: 15 Pages: 3794-3802

    • DOI

      10.1021/acs.langmuir.6b00799

    • NAID

      120006457110

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Preferential 5-Methylcytosine Oxidation in the Linker Region of Reconstituted Positioned Nucleosomes by Tet1 Protein2016

    • Author(s)
      Kizaki, Seiichiro; Zou, Tingting; Li, Yue; Han, Yong-Woon; Suzuki, Yuki; Harada, Yoshie; Sugiyama, Hiroshi
    • Journal Title

      Chemistry

      Volume: 22 Issue: 46 Pages: 16598-16601

    • DOI

      10.1002/chem.201602435

    • NAID

      120006460116

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] The application of fluorescence-conjugated pyrrole/imidazole polyamides in the characterization of protein-DNA complex formation2016

    • Author(s)
      Han YW, Sugiyama H, Harada Y
    • Journal Title

      Biomater Sci.

      Volume: 4 Issue: 3 Pages: 391-399

    • DOI

      10.1039/c5bm00214a

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Suppression of Non-Specific Protein-Nanodiamond Adsorption Enabling Specific Targeting of Nanodiamonds to Bio-molecules of Interest2015

    • Author(s)
      Shingo Sotoma, Ryuji Igarashi, Jun Iimura, Yuta Kumiya, Hedehito Tochio, Yoshie Harada and Masahiro Shirakawa,
    • Journal Title

      Chemistry letters

      Volume: 44 Issue: 3 Pages: 354-356

    • DOI

      10.1246/cl.141036

    • NAID

      130004868380

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] ECHO-liveFISH: in vivo RNA labeling reveals dynamic regulation of nuclear RNA foci in living tissues.2015

    • Author(s)
      Oomoto, I., Suzuki-Hirano, A., Umeshima, H., Han, YW., Yanagisawa, H., Carlton, P., Harada, Y., Kengaku, M., Okamoto, A., Shimogori, T. and Wang, DO.
    • Journal Title

      Nucleic Acids Res.

      Volume: 43(19) Issue: 19 Pages: e126-e126

    • DOI

      10.1093/nar/gkv614

    • NAID

      120005619785

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Synergistic effect of ATP for RuvA-RuvB-Holliday junction DNA complex formation.2015

    • Author(s)
      Iwasa, T., Han, Y. W., Hiramatsu, R., Yokota, H., Nakao, K., Yokokawa, R., Ono, T., Harada, Y.
    • Journal Title

      Scientific Reports

      Volume: 5 Issue: 1 Pages: 18177-18177

    • DOI

      10.1038/srep18177

    • NAID

      120005712940

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Optically Detected Magnetic Resonance of Nanodiamonds In Vivo; Implementation of Selective Imaging and Fast Sampling.2015

    • Author(s)
      Yoshinari, Y., Mori, S., Igarashi, R., Sugi, T., Yokota, H., Ikeda, K., Sumiya, H., Mori, I, Tochio, H., *Harada, Y. and Shirakawa, M.
    • Journal Title

      J Nanosci Nanotechnol.

      Volume: 15 Issue: 2 Pages: 1014-1021

    • DOI

      10.1166/jnn.2015.9739

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive and quantitative analysis for controlling the physical/chemical states and particle properties of nanodiamonds for biological applications2015

    • Author(s)
      Sotoma, S., Akagi, K., Hosokawa, S., Igarashi, R., Tochio, H., Harada, Y., and Shirakawa
    • Journal Title

      RSC Advances

      Volume: 5 Issue: 18 Pages: 13818-13827

    • DOI

      10.1039/c4ra16482b

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] 蛍光ダイヤモンド粒子を用いた生体イメージング技術の開発2015

    • Author(s)
      蛍光ダイヤモンド粒子を用いた生体イメージング技術の開発
    • Journal Title

      応用物理

      Volume: 84 Pages: 56-60

    • Related Report
      2014 Annual Research Report
  • [Journal Article] Hard X-ray-induced Optical Luminescence via Biomolecule-directed Metal Clusters2014

    • Author(s)
      Y. Osakada, T. Teranishi, B. Cui et al.
    • Journal Title

      Chem. Commun.

      Volume: 50 Issue: 27 Pages: 3549-3551

    • DOI

      10.1039/c3cc48661c

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Real-time single-cell imaging of protein secretion2014

    • Author(s)
      Yamagishi, M. Suzuki, N. Izawa, K. Nakahara, A. Mizuno, J. Shoji, S. Heike, T. Harada, Y. Nishikomori, R. Ohara, O.
    • Journal Title

      Sci Rep

      Volume: 4 Issue: 1 Pages: 4736-4736

    • DOI

      10.1038/srep04736

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Quantitative in vivo fluorescence cross-correlation analyses highlight the importance of competitive effects in the regulation of protein-protein interactions2014

    • Author(s)
      Sadaie W, Harada Y, Matsuda M, Aoki K
    • Journal Title

      Molecular and Cellular Biology

      Volume: 34 Issue: 17 Pages: 3272-3290

    • DOI

      10.1128/mcb.00087-14

    • NAID

      120005625632

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Effective Production of Fluorescent Nanodiamond Containing Negatively-Charged Nitrogen-Vacancy Center by Ion Irradiation2014

    • Author(s)
      Shingo Sotoma, Yosuke Yoshinari, Ryuji Igarashi, Akiyoshi Yamazaki, Shige H. Yoshimura, Hidesato Tochio, Masahiro Shirakawa and Yoshie Harada
    • Journal Title

      Diamond and Related Materials

      Volume: 49 Pages: 33-38

    • DOI

      10.1016/j.diamond.2014.07.011

    • NAID

      120005474529

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] ナノダイヤモンドNVCを使った新しい生体・細胞計測2014

    • Author(s)
      杤尾豪人、外間進悟、原田慶恵
    • Journal Title

      生化学

      Volume: 86 Pages: 145-153

    • Related Report
      2014 Annual Research Report
  • [Presentation] Studies on Biomolecules Using Single-Molecule Imaging Technique2017

    • Author(s)
      Yoshie Harada
    • Organizer
      RIKEN Joint Retreat 2017
    • Place of Presentation
      浜名湖ロイヤルホテル(静岡県、浜松市)
    • Year and Date
      2017-02-02
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Prototype Magnetometer with diamond NV centers for scalable applications2016

    • Author(s)
      Yuji Hatano , Kosuke Tahara , Takayuki Iwasaki , Susumu Yasuda , Yoshie Harada , Mutsuko Hatano
    • Organizer
      MRS Fall Meetings
    • Place of Presentation
      Boston (USA)
    • Year and Date
      2016-11-27
    • Related Report
      2016 Annual Research Report
  • [Presentation] Functional Analysis of Biomolecules using Single-molecule Imaging Technique2016

    • Author(s)
      Yoshie Harada
    • Organizer
      第77回応用物理学会秋季学術講演会
    • Place of Presentation
      朱鷺メッセ(新潟県、新潟市)
    • Year and Date
      2016-09-13
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Application of Fluorescent Nanodiamonds to Bio-imaging2016

    • Author(s)
      Yoshie Harada
    • Organizer
      BISC ′16:Biomedical Imaging and Sensing Conference 2016
    • Place of Presentation
      パシフィコ横浜(神奈川県、横浜市)
    • Year and Date
      2016-05-17
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of a new fluorescence imaging technique using nanodiamonds2016

    • Author(s)
      Yoshie Harada
    • Organizer
      E-MRS (European Materials Research Society) 2016 Spring Meeting
    • Place of Presentation
      Lille (France)
    • Year and Date
      2016-05-02
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] The new bioimaging method using fluorescent diamond nanoparticles2016

    • Author(s)
      Yoshie Harada
    • Organizer
      MANA International Symposium 2016
    • Place of Presentation
      Tsukuba International Congress Center(茨城県・つくば市)
    • Year and Date
      2016-03-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Development of a new fluorescence imaging technique using diamond nanoparticles2015

    • Author(s)
      Yoshie Harada
    • Organizer
      Pacifichem 2015
    • Place of Presentation
      the Hawaii Convention Center(United States of America)
    • Year and Date
      2015-12-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 蛍光性ナノダイヤモンドによる超解像イメージング及び角度計測に関する研究2015

    • Author(s)
      外間進悟、五十嵐龍治、杤尾豪人、原田慶恵、白川昌宏
    • Organizer
      第38回分子生物学会年会・第88回生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Year and Date
      2015-12-04
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNA-タンパク質相互作用のデジタルカウンティング2015

    • Author(s)
      原田慶恵
    • Organizer
      第38回分子生物学会年会・第88回生化学会大会合同大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県・神戸市)
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 見えないものを観る ~からだの中の分子のはたらき~2015

    • Author(s)
      原田慶恵
    • Organizer
      平成27年度静中静高同窓会総会記念講演
    • Place of Presentation
      グランディエール ブケトーカイ(静岡県・静岡市)
    • Year and Date
      2015-11-07
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Application of fluorescent diamond nanoparticles to bio-imaging2015

    • Author(s)
      Ryuji Igarashi, Shingo Sotoma, Masahiro Shirakawa and Yoshie Harada
    • Organizer
      JSAP-OSA Joint Symposia 2015
    • Place of Presentation
      名古屋国際会議場(愛知県・名古屋市)
    • Year and Date
      2015-09-16
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Force generation mechanism of the RNA polymerase2015

    • Author(s)
      Yoshie Harada
    • Organizer
      The 53th Annual Meeting of the Biophysical Society of Japan
    • Place of Presentation
      金沢大学(石川県・金沢市)
    • Year and Date
      2015-09-14
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Application of fluorescent diamond nanoparticles to bio-imaging2015

    • Author(s)
      Yoshie Harada
    • Organizer
      Diamond Quantum Sensing Workshop 2015
    • Place of Presentation
      Kagawa International Conference Hall(香川県・高松市)
    • Year and Date
      2015-08-07
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of RuvA-RuvB-Holliday junction DNA complex formation process using Single molecule fluorescence imaging technique2015

    • Author(s)
      Yong-Woon Han, Takuma Iwasa, Ryo Hiramatsu, Hiroaki Yokota, Ryuji Yokokawa, Teruo Ono, and Yoshie Harada
    • Organizer
      The 18th iCeMS International Symposium & The 15th International Membrane Research Forum
    • Place of Presentation
      Kyoto University
    • Year and Date
      2015-03-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] ナノ開口基板を用いたDNAメチル化パターン維持機構に関与する生体分子の機能解析2015

    • Author(s)
      韓龍雲、原田慶恵
    • Organizer
      光・量子デバイス研究会
    • Place of Presentation
      ゆふいん七色の風 大分
    • Year and Date
      2015-01-26
    • Related Report
      2014 Annual Research Report
  • [Presentation] 1分子イメージング技術を使った生体分子機能解析2014

    • Author(s)
      原田慶恵
    • Organizer
      大阪大学蛋白研究所未来コロキウム
    • Place of Presentation
      大阪大学蛋白質研究所
    • Year and Date
      2014-12-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] ナノ開口を用いたDNAとDNA結合タンパク質の相互作用解析2014

    • Author(s)
      原田慶恵
    • Organizer
      日本細胞生物学会大会
    • Place of Presentation
      奈良県新公会堂 奈良
    • Year and Date
      2014-06-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] Studies on biomolecules using single-molecule imaging techniques2014

    • Author(s)
      Yoshie Harada
    • Organizer
      The 19th Annual Conference of the Biophysical Society of ROC
    • Place of Presentation
      National Cheng Kung University, Tainan, Taiwan
    • Year and Date
      2014-05-08
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Book] 発光の事典 ―基礎からイメージングまで― 7.1.5 ダイヤモンドナノ粒子2015

    • Author(s)
      原田慶恵
    • Total Pages
      4
    • Publisher
      朝倉書店
    • Related Report
      2015 Annual Research Report
  • [Remarks] 原田研究室研究テーマ

    • URL

      https://www.ccc.osaka-u.ac.jp/protein/nanobiology/research/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 原田研究室研究テーマ

    • URL

      http://www.harada.icems.kyoto-u.ac.jp/research.html

    • Related Report
      2015 Annual Research Report
  • [Remarks] 原田研究室 研究テーマ

    • URL

      http://www.harada.icems.kyoto-u.ac.jp/research.html

    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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