• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Molecular Mechanism of Metal Cluster Incorporation in Hydorogenase Maturation Process

Research Project

Project/Area Number 26291012
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypePartial Multi-year Fund
Section一般
Research Field Structural biochemistry
Research InstitutionKyoto University

Principal Investigator

Miki Kunio  京都大学, 理学(系)研究科(研究院), 教授 (10116105)

Co-Investigator(Kenkyū-buntansha) 渡部 聡  東北大学, 多元物質科学研究所, 助教 (50432357)
Co-Investigator(Renkei-kenkyūsha) ATOMI Haruyuki  京都大学, 大学院工学研究科, 教授 (90243047)
Research Collaborator NISHITANI Yuichi  京都大学, 大学院理学研究科, 特定研究員
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥16,510,000 (Direct Cost: ¥12,700,000、Indirect Cost: ¥3,810,000)
Fiscal Year 2016: ¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2015: ¥5,460,000 (Direct Cost: ¥4,200,000、Indirect Cost: ¥1,260,000)
Fiscal Year 2014: ¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Keywords成熟化タンパク質 / X線結晶構造解析 / 金属取り込み / Hypタンパク質 / 複合体構造 / 構造生物学 / X線結晶解析 / タンパク質
Outline of Final Research Achievements

Six Hyp proteins (HypA, B, C, D, E, and F) are primarily involved in the maturation process of [NiFe] hydrogenases which catalyze reversible hydrogen production and consumption. These Hyp proteins incorporate a Ni/Fe cluster into [NiFe] hydrogenases. On the basis of our previous success in the structure determination of several Hyp proteins and their complexes, we have investigated structure and function of transient complexes such as HypAB complex, hydrogenase large subunit HyhL and Hyp protein complexes, and protease HybD. In addition, we have tried to identify a candidate for the Ni metallochaperone. These experimental results provided us information about the molecular mechanism of the [NiFe] hydrogenase maturation.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Annual Research Report
  • 2014 Annual Research Report
  • Research Products

    (14 results)

All 2016 2015 2014

All Journal Article (3 results) (of which Peer Reviewed: 3 results,  Acknowledgement Compliant: 2 results,  Open Access: 1 results) Presentation (11 results) (of which Int'l Joint Research: 2 results,  Invited: 2 results)

  • [Journal Article] Crystal Structure of the TK2203 Protein from Thermococcus kodakarensis, a Putative Extradiol Dioxygenase2016

    • Author(s)
      Y. Nishitani, J-R. Simons, T. Kanai, H. Atomi, and K. Miki
    • Journal Title

      Acta Crystallogr.

      Volume: F72 Issue: 6 Pages: 427-433

    • DOI

      10.1107/s2053230x16006920

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Crystal Structure of a [NiFe] Hydrogenase Maturation Protease HybD from Thermococcus kodakarensis KOD12016

    • Author(s)
      S. Kwon, Y. Nishitani, S. Watanabe, Y. Hirao, T. Imanaka, T. Kanai, H. Atomi, and K. Miki
    • Journal Title

      Proteins: Struct., Funct., Bioinfo.

      Volume: 84 Issue: 9 Pages: 1321-1327

    • DOI

      10.1002/prot.25070

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Structural basis of a Ni acquisition cycle for [NiFe]-hydrogenase by HypA and its enhancer.2015

    • Author(s)
      Watanabe, S., Kawashima, T., Nishitani, Y., Kanai, T., Wada, T., Inaba, K., Atomi, H., Imanaka, T. and Miki, K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 112 Issue: 25 Pages: 7701-7706

    • DOI

      10.1073/pnas.1503102112

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] [NiFe]ヒドロゲナーゼ大サブユニットと成熟化タンパク質との複合体の結晶学的研究2016

    • Author(s)
      權 成鶴,西谷優一,渡部 聡,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2016年度年会
    • Place of Presentation
      水戸市,茨城県立県民文化センター
    • Year and Date
      2016-11-17
    • Related Report
      2016 Annual Research Report
  • [Presentation] Structural Study of Hyp Protein Complexes for the Maturation of [NiFe] Hydrogenase from Thermococcus kodakarensis2016

    • Author(s)
      S. Watanabe, T. Kawashima, Y. Nishitani, T. Kanai, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      The 11th International Congress on Extremophiles (Extremophiles 2016)
    • Place of Presentation
      Kyoto University, Japan
    • Year and Date
      2016-09-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Structure Analysis of a Hydrogenase Maturation Protease from the Hyperthermophilic Archaeon Thermococcus kodakarensis2016

    • Author(s)
      S. Kwon, Y. Nishitani, S. Watanabe, Y. Hirao, T. Imanaka, T. Kanai, H. Atomi, and K. Miki
    • Organizer
      The 11th International Congress on Extremophiles (Extremophiles 2016)
    • Place of Presentation
      Kyoto University, Japan
    • Year and Date
      2016-09-12
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化に関わるアーキア由来HybDのX線結晶構造解析2016

    • Author(s)
      権 成鶴,西谷優一,渡部 聡,金井 保,跡見晴幸,三木邦夫
    • Organizer
      2015年度量子ビームサイエンスフェスタ,第7回MLFシンポジウム,第33回PFシンポジウム
    • Place of Presentation
      つくば市,つくば国際会議場エポカル
    • Year and Date
      2016-03-15
    • Related Report
      2015 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化に関わるアーキア由来HybDのX線結晶構造解析2015

    • Author(s)
      權 成鶴,西谷優一,渡部 聡,金井 保,跡見晴幸,三木邦夫
    • Organizer
      日本結晶学会2015年度年会
    • Place of Presentation
      堺市,大阪府立大学
    • Year and Date
      2015-10-17
    • Related Report
      2015 Annual Research Report
  • [Presentation] [NiFe] ヒドロゲナーゼへNiを組み込むHypAB複合体の結晶構造解析2015

    • Author(s)
      河島拓未,渡部 聡,西谷優一,金井 保,和田健彦,稲葉謙次,跡見晴幸,今中忠行,三木邦夫
    • Organizer
      第15回日本蛋白質科学会年会
    • Place of Presentation
      徳島市,あわぎんホール
    • Year and Date
      2015-06-24
    • Related Report
      2015 Annual Research Report
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化に関与するHypAB複合体のX線結晶構造解析2014

    • Author(s)
      河島拓未,渡部 聡,西谷優一,金井 保,跡見晴幸,今中忠行,三木邦夫
    • Organizer
      日本結晶学会2014年度年会
    • Place of Presentation
      東京都,東京大学農学部
    • Year and Date
      2014-11-01 – 2014-11-03
    • Related Report
      2014 Annual Research Report
  • [Presentation] Studies on intermediate HypAB complexes for Ni insertion during [NiFe] hydrogenase maturation2014

    • Author(s)
      T. Kawashima, S. Watanabe, Y. Nishitani, T. Kanai, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      第52回日本生物物理学会年会
    • Place of Presentation
      札幌市,札幌コンベンションセンター
    • Year and Date
      2014-09-25 – 2014-09-27
    • Related Report
      2014 Annual Research Report
  • [Presentation] Structural basis for the biosynthesis of the CN ligand of [NiFe] hydrogenase2014

    • Author(s)
      S. Watanabe, T. Tominaga, R. Matsumi, H. Atomi, T. Imanaka, and K. Miki
    • Organizer
      XXIII Congress and General Assembly, International Union of Crystallography
    • Place of Presentation
      Montréal, Canada
    • Year and Date
      2014-08-05 – 2014-08-12
    • Related Report
      2014 Annual Research Report
  • [Presentation] タンパク質結晶学の歴史 - はじめに2014

    • Author(s)
      三木邦夫
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜市,ワークピア横浜/横浜産貿ホールマリネリア
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] [NiFe]ヒドロゲナーゼ成熟化におけるシアノ基生合成中間体の構造解析2014

    • Author(s)
      渡部 聡,富永大河,松見理恵,跡見晴幸,今中忠行,三木邦夫
    • Organizer
      第14回日本蛋白質科学会年会
    • Place of Presentation
      横浜市,ワークピア横浜/横浜産貿ホールマリネリア
    • Year and Date
      2014-06-25 – 2014-06-27
    • Related Report
      2014 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi