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Functional analysis of long non-coding using a mouse model

Research Project

Project/Area Number 26430087
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Laboratory animal science
Research InstitutionTokyo Medical and Dental University

Principal Investigator

KOBAYASHI Shin  東京医科歯科大学, 難治疾患研究所, 非常勤講師 (10397664)

Co-Investigator(Kenkyū-buntansha) 幸田 尚  東京医科歯科大学, 難治疾患研究所, 准教授 (60211893)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2016: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsエピジェネティクス / non-coding RNA / 疾患モデル動物 / long non-codingRNA
Outline of Final Research Achievements

Long non-coding RNAs(lncRNA)are thought to be involved in various biological processes, but their functions in vivo largely remain to be elucidated. Here, we showed that targeted deletion of Fat60 lncRNA causes abnormal development, which resembles a human disease. Our results indicate that a functional loss of lncRNA abolishes proper development, suggesting that lncRNA could be a cause for human genetic disease.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (26 results)

All 2018 2017 2016 2015 2014 Other

All Journal Article (11 results) (of which Int'l Joint Research: 8 results,  Peer Reviewed: 11 results,  Open Access: 11 results,  Acknowledgement Compliant: 2 results) Presentation (9 results) (of which Int'l Joint Research: 1 results) Book (3 results) Remarks (3 results)

  • [Journal Article] Epigenetic differences between naive and primed pluripotent stem cells2018

    • Author(s)
      Takahashi Saori、Kobayashi Shin、Hiratani Ichiro
    • Journal Title

      Cellular and Molecular Life Sciences

      Volume: 75 Issue: 7 Pages: 1191-1203

    • DOI

      10.1007/s00018-017-2703-x

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Parental age and gene expression profiles in individual human blastocysts.2018

    • Author(s)
      Kawai K, Harada T, Ishikawa T, Sugiyama R, Kawamura T, Yoshida A, Tsutsumi O, Ishino F, Kubota T, Kohda T.
    • Journal Title

      Sci Rep

      Volume: 8(1) Issue: 1 Pages: 2380-2380

    • DOI

      10.1038/s41598-018-20614-8

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Live imaging of X chromosome inactivation and reactivation dynamics.2017

    • Author(s)
      Kobayashi S.
    • Journal Title

      Dev Growth Differ.

      Volume: 59(6) Issue: 6 Pages: 493-500

    • DOI

      10.1111/dgd.12365

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Reply to Ferlazzo and Foray: About the Space Pup project.2017

    • Author(s)
      Wakayama S, Kamada Y, Yamanaka K, Kohda T, Suzuki H, Shimazu T, Tada MN, Osada I, Nagamatsu A, Kamimura S, Nagatomo H, Mizutani E, Ishino F, Yano S, Wakayama T.
    • Journal Title

      Proc Natl Acad Sci U S A.

      Volume: 114(33) Issue: 33

    • DOI

      10.1073/pnas.1711468114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Healthy offspring from freeze-dried mouse spermatozoa held on the International Space Station for 9 months2017

    • Author(s)
      Sayaka Wakayama, Yuko Kamada, Kaori Yamanaka, Takashi Kohda, Hiromi Suzuki, Toru Shimazu,
    • Journal Title

      PNAS

      Volume: 1 Issue: 23 Pages: 1-6

    • DOI

      10.1073/pnas.1701425114

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A novel method for the simultaneous identification of methylcytosine and hydroxymethylcytosine at a single base resolution.2017

    • Author(s)
      Kawasaki Y, Kuroda Y, Suetake I, Tajima S, Ishino F and Kohda T.
    • Journal Title

      Nucleic Acids Research

      Volume: 45 Pages: gkw994-gkw994

    • DOI

      10.1093/nar/gkw994

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny2017

    • Author(s)
      Furuse T, Miyake K, Kohda T, Kaneda H, Hirasawa T, Yamada I, Kushida T, Kashimura M, Kobayashi K, Ishino F, Kubota T, Wakana S.
    • Journal Title

      Genes & Nutrition

      Volume: 12 Issue: 1 Pages: 1-1

    • DOI

      10.1186/s12263-016-0550-2

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Live imaging of X chromosome reactivation dynamics in early mouse development can discriminate naive from primed pluripotent stem cells.2016

    • Author(s)
      Kobayashi S, Hosoi Y, Shiura H, Yamagata K, Takahashi S, Fujihara Y, Kohda T, Okabe M, Ishino F.
    • Journal Title

      Development

      Volume: 143 Issue: 16 Pages: 2958-2964

    • DOI

      10.1242/dev.136739

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ftx is dispensable for imprinted X-chromosome inactivation in preimplantation mouse embryos.2014

    • Author(s)
      Soma, M., Fujihara, Y., Okabe, M., Ishino, F. and Kobayashi, S.
    • Journal Title

      Scientific Reports

      Volume: 4 Issue: 1 Pages: 5181-5181

    • DOI

      10.1038/srep05181

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Induction of the G2/M transition stabilizes haploid embryonic stem cells2014

    • Author(s)
      Saori Takahashi*, Jiyoung Lee*, Takashi Kohda, Ayumi Matsuzawa, Miyuri Kawasumi, Masami Kanai-Azuma, Tomoko Kaneko-Ishino and Fumitoshi Ishino (*equally contributed)
    • Journal Title

      Development

      Volume: 141 Issue: 20 Pages: 3842-3847

    • DOI

      10.1242/dev.110726

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Establishment of paternal genomic imprinting in mouse prospermatogonia analyzed by nuclear transfer.2014

    • Author(s)
      Kamimura S, Hatanaka, Y, Hirasawa,R Matsumoto K, Oikawa, M, Lee J, Matoba S, Mizutani E, Ogonuki N, Inoue K, Kohda T, Ishino F, Ogura A
    • Journal Title

      Biology of Reproduction

      Volume: 91 Issue: 5 Pages: 1-12

    • DOI

      10.1095/biolreprod.114.120451

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] X染色体再活性化ライブイメージングシステムを用いた幹細胞研究2018

    • Author(s)
      小林 慎 (1,2)、細井勇輔 (2)、志浦 寛相(2)、山縣 一夫(3)、高橋 沙央里 (2)、藤原祥高(3)、岡部勝(3)、石野史敏(2)、五島直樹(1)
    • Organizer
      第17回産総研・産技連LS-BT合同発表会
    • Related Report
      2017 Annual Research Report
  • [Presentation] X染色体再活性化のライブイメージングを可能にする“momijiマウス”の開発と応用2017

    • Author(s)
      小林慎
    • Organizer
      第5回 X染色体研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] 発生におけるX染色体の不活性化および再活性化ダイナミクスのライブイメージング2017

    • Author(s)
      小林 慎 1, 細井 勇輔 1, 志浦 寛相 1, 山縣 一夫 2, 高橋 沙央里 1, 藤原 祥高 2, 幸田 尚 1, 岡部 勝 2, 石野 史敏 1
    • Organizer
      第11回日本エピジェネティクス研究会
    • Related Report
      2017 Annual Research Report
  • [Presentation] X染色体の再活性化ライブイメージング技術を用いた多能性幹細胞の区別2016

    • Author(s)
      小林 慎 , 細井 勇輔 , 志浦 寛相 , 山縣 一夫 , 高橋 沙央里 , 藤原 祥高 , 幸田 尚 , 岡部 勝 , 石野 史敏
    • Organizer
      第39回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(神奈川県横浜市)
    • Year and Date
      2016-11-30
    • Related Report
      2016 Research-status Report
  • [Presentation] Stem cell research using live imaging of X chromosome reactivation.2015

    • Author(s)
      Shin Kobayashi, Yusuke Hosoi, Saori Tkakahashi, Yoshitaka Fujihara, Masaru Okabe, Fumitoshi Ishino,
    • Organizer
      THE 40th NAITO CONFERENCE
    • Place of Presentation
      (Chaterase Gateux kingdom) Sapporo
    • Year and Date
      2015-09-15
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] X染色体再活性化ライブメージング技術と幹細胞研究2015

    • Author(s)
      小林慎、細井勇輔、藤原祥高、岡部勝、石野史敏
    • Organizer
      日本エピジェネティクス研究会
    • Place of Presentation
      東京一ツ橋学術総合センター
    • Year and Date
      2015-05-25 – 2015-05-26
    • Related Report
      2014 Research-status Report
  • [Presentation] X染色体再活性化ライブメージング技術と幹細胞研究2015

    • Author(s)
      小林慎(Kobayashi Shin)、細井勇輔、藤原祥高、岡部勝、石野史敏
    • Organizer
      第9回日本エピジェネティクス研究会
    • Place of Presentation
      一ツ橋学術総合センター (東京都千代田区)
    • Year and Date
      2015-05-25
    • Related Report
      2015 Research-status Report
  • [Presentation] Xicに位置し、着床前に不活化される父親由来のX染色体から発現するインプリント遺伝子Ftxのノックアウトマウスの作製2014

    • Author(s)
      相馬未來, 藤原祥高, 岡部勝, 石野史敏, 小林慎
    • Organizer
      日本分子生物学会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2014-11-25 – 2014-11-27
    • Related Report
      2014 Research-status Report
  • [Presentation] X染色体不活化中心領域に発見した雌でのみ発現するインプリント遺伝子群の解析2014

    • Author(s)
      小林慎, 十時泰,相馬未來, 松本和也,藤原祥高,豊田敦,榊佳之,岡部勝,石野史敏
    • Organizer
      日本エピジェネティクス研究会
    • Place of Presentation
      伊藤国際学術研究センター
    • Year and Date
      2014-05-25 – 2014-05-27
    • Related Report
      2014 Research-status Report
  • [Book] 動物の事典2017

    • Author(s)
      小林慎ほか
    • Publisher
      朝倉書店
    • Related Report
      2016 Research-status Report
  • [Book] 『動物の事典』2016

    • Author(s)
      小林慎 (末光隆志ほか編)
    • Publisher
      朝倉書店
    • Related Report
      2015 Research-status Report
  • [Book] 動物の事典「ゲノム・インプリンティング」の項2015

    • Author(s)
      小林慎
    • Publisher
      朝倉書店
    • Related Report
      2014 Research-status Report
  • [Remarks] 小林慎 研究紹介

    • URL

      http://www.tmd.ac.jp/mri/epgn/shin_kobayashi.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 産業技術総合研究所・創薬分子プロファイリングセンター

    • URL

      http://www.molprof.jp/research/qpt1.html

    • Related Report
      2017 Annual Research Report
  • [Remarks] 東京医科歯科大学難治疾患研究所・エピジェネティクス分野・小林 慎研究内容紹介

    • URL

      http://www.tmd.ac.jp/mri/epgn/shin_kobayashi.html

    • Related Report
      2016 Research-status Report 2015 Research-status Report 2014 Research-status Report

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Published: 2014-04-04   Modified: 2021-12-27  

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