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Analysis for structure and DNA/RNA binding activity of the bacterial cytoskeletal protein RodZ

Research Project

Project/Area Number 26440014
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field Molecular biology
Research InstitutionNational Institute of Infectious Diseases

Principal Investigator

Jiro Mitobe  国立感染症研究所, 細菌第一部, 主任研究官 (40333364)

Co-Investigator(Kenkyū-buntansha) 柳原 格  地方独立行政法人大阪府立病院機構大阪母子医療センター(研究所), 免疫部門, 部長 (60314415)
Project Period (FY) 2014-04-01 – 2018-03-31
Project Status Completed (Fiscal Year 2017)
Budget Amount *help
¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsバクテリア細胞骨格 / RNA結合蛋白 / 転写後調節 / 蛋白局在 / 細胞骨格蛋白 / 局在 / 赤痢菌 / ワクチン / 多量体形成能 / ジスルフィド結合 / 多量体形成 / RNA結合 / DNA結合 / DNA結合蛋白
Outline of Final Research Achievements

Bacterial cytoskeletal protein RodZ, which is involved in formation of rod shape of bacilli, is also involved in post-transcriptional regulation of invE(virB) gene in the type 3 secretion system of Shigella through the RNA binding activity. In this study, we found that the RNA binding activity was depended on hexamer formation and clustering ability of multiple hexamers. Such cluster was consistently detected by immuno-fluorescent microscopy with super resolution confocal setting. In an attempt to isolate genes under regulation by RodZ, we found that expression of rpoS and rpoH genes encoding sigma subunits of RNA polymerase, which have been well-characterized post-transcriptional regulation, were increased by rodZ mutation. Analysis of DNA and RNA binding activities indicated that sequence specificity was not identified. In addition, the binding activity was sensitive to the salt concentration.

Report

(5 results)
  • 2017 Annual Research Report   Final Research Report ( PDF )
  • 2016 Research-status Report
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (16 results)

All 2018 2017 2016 2015 2014 Other

All Int'l Joint Research (3 results) Journal Article (7 results) (of which Int'l Joint Research: 3 results,  Peer Reviewed: 7 results,  Open Access: 2 results,  Acknowledgement Compliant: 1 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Book (1 results) Remarks (1 results)

  • [Int'l Joint Research] NICED (ICMR Kolkata)(India)

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research]

    • Related Report
      2017 Annual Research Report
  • [Int'l Joint Research] NICED (ICMR Kolkata)(India)

    • Related Report
      2015 Research-status Report
  • [Journal Article] An attenuated Shigella mutant lacking the RNA-binding protein Hfq affords cross protection against Shigella strains of broad serotype.2017

    • Author(s)
      Jiro Mitobe, Ritam Sinha, Soma Mitra, Dhrubajyoti Nag, Noriko Saito, Ken Shimuta, Nobuo Koizumi, Hemanta Koley.
    • Journal Title

      PLOS Neglected Tropical Diseases.

      Volume: 11 Issue: 7 Pages: 7-7

    • DOI

      10.1371/journal.pntd.0005728

    • Related Report
      2017 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Intracellular fate of Ureaplasma parvum entrapped by host cellular autophagy2017

    • Author(s)
      Nishiumi F, Ogawa M, Nakura Y, Hamada Y, Nakayama M, Mitobe J, Hiraide A, Sakai N, Takeuchi M, Yoshimori T, Yanagihara I*
    • Journal Title

      MicrobiologyOpen

      Volume: - Issue: 3 Pages: 1-15

    • DOI

      10.1002/mbo3.441

    • Related Report
      2016 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Development of a cost-effective vaccine candidate with outer membrane vesicles of a tolA-disrupted Shigella boydii strain.2016

    • Author(s)
      Mitra S, Sinha R, Mitobe J, Koley H.
    • Journal Title

      Vaccine.

      Volume: 34 Issue: 15 Pages: 1839-46

    • DOI

      10.1016/j.vaccine.2016.02.018

    • Related Report
      2016 Research-status Report 2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Epidemiological analysis of a large enterohaemorrhagic Escherichia coli O111 outbreak in Japan associated with haemolytic uraemic syndrome and acute encephalopathy.2015

    • Author(s)
      Yahata Y, Misaki T, Ishida Y, Nagira M, Watahiki M, Isobe J, Terajima J, Iyoda S, Mitobe J, Ohnishi M, Sata T, Taniguchi K, Tada Y, Okabe N; E. coli O111 Outbreak Investigation Team.
    • Journal Title

      Epidemiol Infect.

      Volume: 143 Issue: 13 Pages: 2721-2732

    • DOI

      10.1017/s0950268814003641

    • Related Report
      2015 Research-status Report
    • Peer Reviewed
  • [Journal Article] Epidemiological analysis of a large enterohaemorrhagic Escherichia coli O111 outbreak in Japan associated with haemolytic uraemic syndrome and acute encephalopathy.2015

    • Author(s)
      Yahata Y, Misaki T, Ishida Y, Nagira M, Watahiki M, Isobe J, Terajima J, Iyoda S, Mitobe J, Ohnishi M, Sata T, Taniguchi K, Tada Y, Okabe N
    • Journal Title

      Epidemiol Infect PMID: 25600435

      Volume: 20 Pages: 1-12

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Characterization of enterohemorrhagic Escherichia coli O111 and O157 strains isolated from outbreak patients in Japan.2014

    • Author(s)
      Watahiki M, Isobe J, Kimata K, Shima T, Kanatani J, Shimizu M, Nagata A, Kawakami K, Yamada M, Izumiya H, Iyoda S, Morita-Ishihara T, Mitobe J, Terajima J, Ohnishi M, Sata T.
    • Journal Title

      J Clin Microbiol.

      Volume: 52(8) Issue: 8 Pages: 2757-63

    • DOI

      10.1128/jcm.00420-14

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Regulation of natural competence by the orphan two-component system sensor kinase ChiS involves a non-canonical transmembrane regulator in Vibrio cholerae2014

    • Author(s)
      Yamamoto S, Mitobe J, Ishikawa T, Wai SN, Ohnishi M, Watanabe H, Izumiya H.
    • Journal Title

      Molecular Microbiology

      Volume: 91 Issue: 2 Pages: 326-347

    • DOI

      10.1111/mmi.12462

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] 赤痢菌の3型分泌装置発現に関わるバクテリア細胞骨格RodZのRNA結合活性と多量体形成機構の解析2018

    • Author(s)
      三戸部治郎 西海史子 柳原格 大西真
    • Organizer
      第91回日本細菌学会総会
    • Related Report
      2017 Annual Research Report
  • [Presentation] An attenuated Shigella mutant lacking the RNA-binding protein Hfq affords cross protection against Shigella strains of broad serotype.2018

    • Author(s)
      Jiro Mitobe, Ritam Sinha, Soma Mitra, Dhrubajyoti Nag, Noriko Saito, Ken Shimuta, Nobuo Koizumi, Hemanta Koley.
    • Organizer
      52nd Joint Panel Conference on Cholera and other Bacterial Enteric Infection. Hat Yai, Thailand
    • Related Report
      2017 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 赤痢菌の病原性発現機構に基づいた、汎血清型に作用するユニバーサル弱毒ワクチン候補株の開発2017

    • Author(s)
      三戸部治郎 小泉信夫 志牟田健 Ritam Sinha, Soma Mitra, Dhrubajyoti Nag, Hemanta Koley
    • Organizer
      日本細菌学会総会
    • Place of Presentation
      仙台国際センター展示棟
    • Year and Date
      2017-03-19
    • Related Report
      2016 Research-status Report
  • [Presentation] 赤痢菌の病原性発現機構にもとづいた汎血清型に作用するユニバーサル弱毒ワクチン候補株の開発2016

    • Author(s)
      三戸部治郎 小泉信夫 志牟田健, Ritam Sinha, Soma Mitra, Duruba Nag, Hemanta Koley
    • Organizer
      第89回日本細菌学会総会
    • Place of Presentation
      大阪国際交流センター
    • Year and Date
      2016-03-23
    • Related Report
      2015 Research-status Report
  • [Book] 病原細菌・ウイルス図鑑2017

    • Author(s)
      新居志郎(代表)・倉田毅・林英生・本田武司・小田紘・松本明 編集委員
    • Total Pages
      916
    • Publisher
      北海道大学出版会
    • ISBN
      9784832982291
    • Related Report
      2017 Annual Research Report
  • [Remarks] 病原性の発現メカニズムにもとづいた、広汎な血清型に作用する赤痢ワクチン候補株の開発。

    • URL

      https://www.niid.go.jp/niid/ja/basic-science/459-bacteriology/7420-bac-2017-001.html

    • Related Report
      2017 Annual Research Report

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Published: 2014-04-04   Modified: 2021-03-11  

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