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Analysis of Metal-binding Proteins by Mass Spectrometry

Research Project

Project/Area Number 26505016
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Research Field オミクス計測科学
Research InstitutionNational Institute of Advanced Industrial Science and Technology (2015-2016)
The Institute of Physical and Chemical Research (2014)

Principal Investigator

Asakawa Daiki  国立研究開発法人産業技術総合研究所, 分析計測標準研究部門, 主任研究員 (60584365)

Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Fiscal Year 2016: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2015: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
KeywordsAnalytical Chemistry / Mass Spectrometry / 金属-ペプチド複合体 / タンデム質量分析 / 電子移動解離 / 電子捕獲解離 / 密度汎関数理論 / リン酸化ペプチド / 金属結合サイト
Outline of Final Research Achievements

Electn transfer dissociation (ETD) tandem mass spectrometry have been used as analytical method for characterization of protein. Since ECD/ETD involved the recombination between peptide ion and electron/anion, employing ions with a higher charge state as the precursor dramatically increases the yield of radical reactive species and thereby improving the sequence coverage obtained with ETD. Hoerver, the charge state of peptides is dependent on the peptide sequence, especially on the number of basic residues. For analysis of tryptic peptides, the N-terminal amino group and the C-terminal basic residue are protonated, often yielding doubly protonated species. However, double protonation is not enough for the ion/electron reaction of ETD to yield better sequence coverage. We found that the use of a suitable metal salt in analyte solution would increase the charge state of tryptic peptide ions containing acidic residues and provide information useful for sequencing by ETD.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (13 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (7 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 7 results,  Acknowledgement Compliant: 5 results) Presentation (4 results) (of which Int'l Joint Research: 1 results) Patent(Industrial Property Rights) (1 results)

  • [Int'l Joint Research] リエージュ大学(ベルギー)

    • Related Report
      2015 Research-status Report
  • [Journal Article] Direct MALDI-MS Analysis of the Disulfide Bonds in Peptide Using Thiosalicylic Acid as a Reactive Matrix2017

    • Author(s)
      D. Asakawa, I. Osaka
    • Journal Title

      J. Mass Spectrom.

      Volume: 52 Issue: 2 Pages: 127-131

    • DOI

      10.1002/jms.3906

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] High-Confidence Sequencing of Phosphopeptides by Electon Transfer Dissociation Mass Spectrometry Using Dinuclear Zinc(II) Complex2016

    • Author(s)
      D. Asakawa, I. Osaka
    • Journal Title

      Anal. Chem.

      Volume: 88 Issue: 24 Pages: 12393-12402

    • DOI

      10.1021/acs.analchem.6b03645

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] N–Cα Bond Cleavage of Zinc-Polyhistidine Complexes in Electron Transfer Dissociation Mediated by Zwitterion Formation. Experimental Evidence and Theoretical Analysis of the Utah-Washington Model2016

    • Author(s)
      D. Asakawa, A. Yamashita, S. Kawai, T. Takeuchi, Y. Wada
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 120 Issue: 5 Pages: 891-901

    • DOI

      10.1021/acs.jpcb.5b11118

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Estimation of Peptide N-Cα Bond Cleavage Efficiency during MALDI-ISD Using a Cyclic Peptide2016

    • Author(s)
      D. Asakawa, N. Smargiasso, E. De Pauw
    • Journal Title

      Journal of Mass Spectrometry

      Volume: 51 Issue: 5 Pages: 323-327

    • DOI

      10.1002/jms.3748

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Difference of Electron Capture and Transfer Dissociation Mass Spectrometry on Ni2+-, Cu2+- and Zn2+-Polyhistidine Complexes in the Absence of Remote Protons2016

    • Author(s)
      D. Asakawa, E. De Pauw
    • Journal Title

      Journal of the American Society for Mass Spectrometry

      Volume: - Issue: 7 Pages: 1165-1175

    • DOI

      10.1007/s13361-016-1395-z

    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] Influence of Metal-Peptide Complexation on Fragmentation and Inter-Fragment Hydrogen Migration in Electron Transfer Dissociation2014

    • Author(s)
      D. Asakawa, T. Takeuchi, A. Yamashita, Y. Wada
    • Journal Title

      J. Am. Soc. Mass Spectrom

      Volume: 25 Issue: 6 Pages: 1029-1039

    • DOI

      10.1007/s13361-014-0855-6

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Journal Article] Electron transfer dissociation mass spectrometry of peptides containing free cysteine using group XII metals as a charge carrier2014

    • Author(s)
      Asakawa D, Wada Y.
    • Journal Title

      J Phys Chem B

      Volume: 118 Issue: 43 Pages: 12318-25

    • DOI

      10.1021/jp502818u

    • Related Report
      2014 Research-status Report
    • Peer Reviewed
  • [Presentation] Density functional theory calculation, Metal reduction, Zwitterion formation, Hydrogen radical loss, Peptide bond cleavage2016

    • Author(s)
      Daiki Asakawa, Edwin De Pauw
    • Organizer
      64th ASMS Conference
    • Place of Presentation
      San Antonio, TX, USA
    • Year and Date
      2016-06-05
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] プロトンを含まない亜鉛-ポリヒスチジン複合体の電子捕獲・電子移動解離過程2016

    • Author(s)
      浅川 大樹、De Pauw, Edwin
    • Organizer
      日本質量分析学会総合討論会
    • Place of Presentation
      ホテル阪急エキスポパーク(大阪府吹田市)
    • Year and Date
      2016-05-18
    • Related Report
      2016 Annual Research Report
  • [Presentation] 金属錯体添加を利用した電子移動解離タンデム質量分析法によるリン酸化ペプチドのアミノ酸配列解析2016

    • Author(s)
      浅川大樹、大坂一生
    • Organizer
      新アミノ酸分析研究会第6回学術講演会
    • Place of Presentation
      ホテル阪急エキスポパーク(東京都文京区)
    • Related Report
      2016 Annual Research Report
  • [Presentation] 金属-ペプチド複合体を用いた電子移動解離質量分析法の本質解明に向けたアプローチ2015

    • Author(s)
      浅川大樹、山下明日香、和田芳直、竹内孝江
    • Organizer
      第63回質量分析総合討論会
    • Place of Presentation
      茨城県つくば市
    • Year and Date
      2015-06-15
    • Related Report
      2015 Research-status Report
  • [Patent(Industrial Property Rights)] 特許2016

    • Inventor(s)
      浅川大樹
    • Industrial Property Rights Holder
      浅川大樹
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      2016-174673
    • Filing Date
      2016-09-07
    • Related Report
      2016 Annual Research Report

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Published: 2014-04-04   Modified: 2018-03-22  

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