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The epigenetic regulation for DNA damage memory

Research Project

Project/Area Number 26550028
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Risk sciences of radiation and chemicals
Research InstitutionKyoto University

Principal Investigator

Ikura Masae  京都大学, 放射線生物研究センター, 研究員 (40535275)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2014: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsDNA損傷記憶 / ヒストン化学修飾 / クロマチン構造変換 / クロマチン免疫沈降
Outline of Final Research Achievements

It is known that histone modifications including the phosphorylatin, acetylation, ubiquitination and methylation have been detected after induction of DNA damage. However, it is unclear whether these modifications are removed or still observed after DNA damage-repair. Thus we investigated the status of these modifications including the phosphorylated H2AX at the DNA damage-repaired sites by the chromatin immunoprecipitation (Chromation IP). As a result, the phosphorylated histone H2AX was decreased as DNA damage is repaired. We are still analyzing the status of some other histone modifications by using chromatin IP method. As for the chromatin status at the DNA damage site by I-Sce1 by using real-time PCR for the sensitivity for MNase, we observed the chromatin opening at the damage site. We will analyze the chromatin status after DNA repair in the near future.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (19 results)

All 2016 2015 2014

All Journal Article (7 results) (of which Peer Reviewed: 7 results,  Open Access: 4 results,  Acknowledgement Compliant: 2 results) Presentation (12 results)

  • [Journal Article] Coordinated regulation of TIP60 and PARP-1 in damaged chromatin dynamics.2016

    • Author(s)
      Ikura M
    • Journal Title

      Mol. Cell. Biol.

      Volume: Epub ahead of print Issue: 10 Pages: 1595-1607

    • DOI

      10.1128/mcb.01085-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Disruption of DNA Damage-Response by Propyl Gallate and 9-Aminoacridine2016

    • Author(s)
      Matsuda S
    • Journal Title

      Toxicol. Sci.

      Volume: 150 Issue: 2 Pages: 1-12

    • DOI

      10.1093/toxsci/kfw039

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Acetylation of Histone H2AX at Lys 5 by the TIP60 Histone Acetyltransferase Complex Is Essential for the Dynamic Binding of NBS1 to Damaged Chromatin.2015

    • Author(s)
      Ikura M
    • Journal Title

      Mol. cell. Biol.

      Volume: 35 Issue: 24 Pages: 4147-4157

    • DOI

      10.1128/mcb.00757-15

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nuclear pyruvate kinase M2 complex serves as a transcriptional coactivator of arylhydrocarbon receptor.2015

    • Author(s)
      Shun Matsuda, Jun Adachi, Masaru Ihara, Nobuhiro Tanuma, Hiroshi Shima, Akira Kakizuka, Masae Ikura, Tsuyoshi Ikura, Tomonari Matsuda
    • Journal Title

      Nucleic Acids Res

      Volume: 44(2) Issue: 2 Pages: 636-647

    • DOI

      10.1093/nar/gkv967

    • NAID

      120005818255

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] hCAS/CSE1L regulates RAD51 distribution and focus formation for homologous recombinational repair2015

    • Author(s)
      1.Okimoto S, Sun J, Fukuto A, Horikoshi Y, Matsuda S, Matsuda T, Ikura M, Ikura T, Machida S, Kurumizaka H, Miyamoto Y, Oka M, Yoneda Y, Kiuchi Y, Tashiro S.
    • Journal Title

      Genes Cells.

      Volume: 20 Issue: 9 Pages: 681-94

    • DOI

      10.1111/gtc.12262

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Absolute quantification of acetylation and phosphorylation of the histone variant H2AX upon ionizing radiation reveals distinct cellular responses in two cancer cell lines2015

    • Author(s)
      Matsuda S
    • Journal Title

      Radiat. Environ. Biophys.

      Volume: 54 Issue: 4 Pages: 403-411

    • DOI

      10.1007/s00411-015-0608-3

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nap1 stimulates homologous recombination by RAD51 and RAD54 in higher-ordered chromatin containing histone H1.2014

    • Author(s)
      Machida, S., Takaku, M., Ikura, M., Sun, J., Suzuki, H., Kobayashi, W., Kinomura, A., Osakabe, A., Tachiwana, H., Horikoshi, Y., Fukuto, A., Matsuda, R., Ura, K., Tashiro, S., Ikura, T., and Kurumizaka, H.
    • Journal Title

      Scientific Rep.

      Volume: 4 Issue: 1 Pages: 4863-4863

    • DOI

      10.1038/srep04863

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] DNA損傷応答における動的クロマチン平衡とその意義2015

    • Author(s)
      井倉 毅
    • Organizer
      第38回日本分子生物学会年会第88回日本生化学会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] DNAチェックポイント因子Rad9の分解を促進するCdk-Plk1依存的機構2015

    • Author(s)
      郡司未佳
    • Organizer
      第38回日本分子生物学会年会第88回日本生化学会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] ピルビン酸キナーゼとピルビン酸デヒドロゲナーゼ複合体によるアセチルCoAの治産池消モデル2015

    • Author(s)
      松田俊
    • Organizer
      第38回日本分子生物学会年会第88回日本生化学会合同大会
    • Place of Presentation
      神戸市
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] Histone H2AX dynamics coordinates DNA repair with chromatin reorganization2015

    • Author(s)
      Masae Ikura
    • Organizer
      The 5th International Symposium of RIRBM, Hiroshima University
    • Place of Presentation
      広島市
    • Year and Date
      2015-03-02 – 2015-03-03
    • Related Report
      2014 Research-status Report
  • [Presentation] The coupling of epigenetic regulation with metabolism in cancer2015

    • Author(s)
      Tsuyoshi Ikura
    • Organizer
      The 30th RBC-NIRS International Symposium "Frontier Radiation Biology, Now and In the future"
    • Place of Presentation
      京都市
    • Year and Date
      2015-02-20 – 2015-02-21
    • Related Report
      2014 Research-status Report
  • [Presentation] The role of the pyruvate kinase M2 (PKM2) in the Arylhydrocarbon Receptor-mediated Transcription2015

    • Author(s)
      Tsuyoshi Ikura
    • Organizer
      5th meeting of the Asian Forum for chromatin and chromosome Biology
    • Place of Presentation
      Bungalow, India.
    • Year and Date
      2015-01-13 – 2015-01-19
    • Related Report
      2014 Research-status Report
  • [Presentation] The role of histone H2AX dynamics in DNA damage response2014

    • Author(s)
      Tsuyoshi ikura
    • Organizer
      The 4D Nucleome 2014
    • Place of Presentation
      広島市
    • Year and Date
      2014-12-17 – 2014-12-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Nap1 is required for the homologous recombination reaction in higher-order chromatin containing histone H12014

    • Author(s)
      Shinichi Machida
    • Organizer
      The 4D Nucleome 2014
    • Place of Presentation
      広島市
    • Year and Date
      2014-12-17 – 2014-12-20
    • Related Report
      2014 Research-status Report
  • [Presentation] Nap1は高次クロマチンでの相同組換えを促進する2014

    • Author(s)
      町田晋一
    • Organizer
      第32回 染色体ワークショップ
    • Place of Presentation
      広島市
    • Year and Date
      2014-12-15 – 2014-12-17
    • Related Report
      2014 Research-status Report
  • [Presentation] Activation of the SUMO modification system is required for the accumulation of RAD51 at sites containing DNA damage2014

    • Author(s)
      Tsuyoshi Ikura
    • Organizer
      第5回日米修復会議
    • Place of Presentation
      徳島県鳴門市
    • Year and Date
      2014-10-28 – 2014-10-29
    • Related Report
      2014 Research-status Report
  • [Presentation] DNA損傷応答におけるヒストンH2AX化学修飾の時空間的制御2014

    • Author(s)
      井倉 毅
    • Organizer
      第87回日本生化学大会
    • Place of Presentation
      京都市
    • Year and Date
      2014-10-15 – 2014-10-16
    • Related Report
      2014 Research-status Report
  • [Presentation] Chromatin dynamics in DNA damage response2014

    • Author(s)
      Masae Ikura
    • Organizer
      IIAS Research Conference 2014 Chromatin decoding
    • Place of Presentation
      京都市
    • Year and Date
      2014-05-12 – 2014-05-14
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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