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Analysis of biological rhythm by using laboratory evolution

Research Project

Project/Area Number 26640135
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field System genome science
Research InstitutionInstitute of Physical and Chemical Research

Principal Investigator

Chikara Furusawa  国立研究開発法人理化学研究所, 生命システム研究センター, チームリーダー (00372631)

Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywords変動環境 / 進化実験 / 大腸菌 / 生体リズム現象
Outline of Final Research Achievements

In this project, we analyzed evolutionary dynamics of E. coli under dynamically changing environment by using laboratory evolution. We cultured E. coli cells under periodically changing culture environments (e.g., carbon sources and addition of antibiotics) to obtain adapted cells to such dynamic environments. As results, we found that by adding two antibiotics periodically, resistance acquisition to one drug was significantly suppressed in comparison with stationary drug addition, while resistance acquisition to the other drug was unchanged. The results suggested that evolutionary routes can be biased by changing environment over time.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (22 results)

All 2015 2014

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results) Presentation (18 results) (of which Int'l Joint Research: 2 results,  Invited: 18 results) Book (3 results)

  • [Journal Article] Phenotypic convergence in bacterial adaptive evolution to ethanol stress2015

    • Author(s)
      Takaaki Horinouchi, Shingo Suzuki, Takashi Hirasawa, Naoaki Ono, Tetsuya Yomo, Hiroshi Shizmiu, Chikara Furusawa
    • Journal Title

      BMC Evo. Biol.

      Volume: 15 Issue: 1 Pages: 180-180

    • DOI

      10.1186/s12862-015-0454-6

    • Related Report
      2015 Annual Research Report
    • Peer Reviewed / Open Access
  • [Presentation] 生物システムの安定性と可塑性: 理論と実験からのアプローチ2015

    • Author(s)
      古澤力
    • Organizer
      第34回 BMIRC研究会
    • Place of Presentation
      九州工業大学 飯塚キャンパス・飯塚市・福岡県
    • Year and Date
      2015-12-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大腸菌進化実験と 細胞シミュレーションを用いた 適応進化ダイナミクスの解析2015

    • Author(s)
      古澤力
    • Organizer
      第38回日本分子生物学会年会
    • Place of Presentation
      神戸国際会議場・神戸市・兵庫県
    • Year and Date
      2015-12-02
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Toward Understanding of Adaptive Evolution:Computational Analysis and Experimental Evolution2015

    • Author(s)
      古澤力
    • Organizer
      平成27年度生命システム理論研究会
    • Place of Presentation
      東京医科歯科大学・文京区・東京都
    • Year and Date
      2015-11-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 生物システムの安定性と可塑性: 大腸菌進化実験によるアプローチ2015

    • Author(s)
      古澤力
    • Organizer
      山田研究会「生物と非生物をつなぐ」
    • Place of Presentation
      ラフォーレ修善寺・伊豆市・静岡県
    • Year and Date
      2015-11-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大腸菌の進化実験を用いた進化ダイナミクスの解析とその応用2015

    • Author(s)
      古澤力
    • Organizer
      第67回日本生物工学大会
    • Place of Presentation
      城山観光ホテル・鹿児島市・鹿児島県
    • Year and Date
      2015-10-28
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大自由度ダイナミクスから”生きている状態”の記述へ2015

    • Author(s)
      古澤力
    • Organizer
      第53回日本生物物理学会年会
    • Place of Presentation
      金沢大学角間キャンパス・金沢市・石川県
    • Year and Date
      2015-09-13
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Toward Understanding of Adaptive Evolution: Computational Analysis and Experimental Evolution2015

    • Author(s)
      古澤力
    • Organizer
      QBiC Symposium: High-dimensional data for the design principles of life
    • Place of Presentation
      理化学研究所 生命システム研究センター・吹田市・大阪府
    • Year and Date
      2015-08-24
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 適応進化ダイナミクスの解明:微生物実験と理論解析2015

    • Author(s)
      古澤力
    • Organizer
      東大理学部物理学科 懇話会
    • Place of Presentation
      東京大学本郷キャンパス・文京区・東京都
    • Year and Date
      2015-07-17
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] ゲノム解析の先に見えるもの:大腸菌進化実験の表現型・遺伝子型解析2015

    • Author(s)
      古澤力
    • Organizer
      第4回NGS現場の会
    • Place of Presentation
      筑波国際会議場・つくば市・茨城県
    • Year and Date
      2015-07-01
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 進化ダイナミクスの構成的理解~大腸菌進化実験から何が見えるか?~2015

    • Author(s)
      古澤力
    • Organizer
      第8回Evo-devo青年の会
    • Place of Presentation
      名古屋大学理学南館・名古屋市・愛知県
    • Year and Date
      2015-06-27
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] 大腸菌進化過程の表現型・遺伝子型解析:抗生物質耐性菌の出現抑制へ向けて2015

    • Author(s)
      古澤力
    • Organizer
      アジレントゲノミクスフォーラム
    • Place of Presentation
      浅草橋ヒューリックホール・台東区・東京都
    • Year and Date
      2015-06-16
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Phenotypic Convergence in Experimental Evolution of Antibiotic Resistant Bacteria2015

    • Author(s)
      古澤力
    • Organizer
      2nd Symposium on Complex Biodynamics&Networks
    • Place of Presentation
      鶴岡市先端研究産業支援センターレクチャーホール・鶴岡市・山形県
    • Year and Date
      2015-05-11
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] ゲノム解析の先に何が見えるか?~大腸菌進化実験の表現型・遺伝子型解析~2015

    • Author(s)
      古澤力
    • Organizer
      1030回生物科学セミナー(東京大学理学部生物学科)
    • Place of Presentation
      東京大学本郷キャンパス・文京区・東京都
    • Year and Date
      2015-05-10
    • Related Report
      2015 Annual Research Report
    • Invited
  • [Presentation] Theoretical/experimental analysis of robustness and plasticity in biological systems2015

    • Author(s)
      古澤力
    • Organizer
      第56回植物生理学会年会シンポジウム
    • Place of Presentation
      東京
    • Year and Date
      2015-03-16 – 2015-03-18
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 進化実験から見えてきたもの:微生物の適応進化過程の理解とその応用2014

    • Author(s)
      古澤力
    • Organizer
      合成生物学シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2014-11-25
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] Creating stress tolerant bacterial cells by experimental evolution2014

    • Author(s)
      Chikara Furusawa
    • Organizer
      5th Asian Symposium on Innovative Bio-production and Biorefinery
    • Place of Presentation
      Tainan
    • Year and Date
      2014-11-09 – 2014-11-11
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 抗生物質を添加した環境での大腸菌進化実験2014

    • Author(s)
      古澤力
    • Organizer
      第87回生化学会大会シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2014-10-15 – 2014-10-16
    • Related Report
      2014 Research-status Report
    • Invited
  • [Presentation] 代謝デザインへ向けたシステムバイオロジー2014

    • Author(s)
      古澤力
    • Organizer
      第105回醗酵学懇話会
    • Place of Presentation
      神戸
    • Year and Date
      2014-08-19
    • Related Report
      2014 Research-status Report
    • Invited
  • [Book] 「進化の謎をゲノムで解く」(長谷部光泰監修)2015

    • Author(s)
      古澤力
    • Publisher
      学研メディカル秀潤社
    • Related Report
      2015 Annual Research Report
  • [Book] 生体の科学2014

    • Author(s)
      古澤力
    • Total Pages
      2
    • Publisher
      医学書院
    • Related Report
      2014 Research-status Report
  • [Book] 細胞工学2014

    • Author(s)
      堀之内貴明、古澤力
    • Total Pages
      4
    • Publisher
      学研メディカル秀潤社
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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