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Development of biochemical and fine structural analyses methods for higher order chromosome structure

Research Project

Project/Area Number 26650010
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Molecular biology
Research InstitutionNational Institute of Genetics

Principal Investigator

ARAKI Hiroyuki  国立遺伝学研究所, 細胞遺伝研究系, 教授 (20151160)

Co-Investigator(Kenkyū-buntansha) HIZUME Kohji  国立遺伝学研究所, 細胞遺伝研究系, 助教 (10378846)
Project Period (FY) 2014-04-01 – 2016-03-31
Project Status Completed (Fiscal Year 2015)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2015: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2014: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywordsクロマチン / DNA複製 / AFM / ヘリカーゼ
Outline of Final Research Achievements

The aim of this study is to establish the method of the purification of the chromatin fiber containing specific DNA region and use the chromatin fiber for structural and biochemical analyses. We carried out the fragmentation of chromosomal DNA by the treatment of the purified yeast nuclei with restriction enzymes and the isolation of the specific chromatin fiber by immunoprecipitation. We have also carried out the purification of the plasmid DNA together with the bound proteins from yeast cells. The structure of the chromatin fiber has been visualized and analyzed by atomic force microscopy (AFM). The reconstituted complex consisting of the chromatin fiber and DNA-replication factors has also been visualized by AFM to evaluate the size and shape of the particles observed in the chromatin fiber purified from yeast cells.

Report

(3 results)
  • 2015 Annual Research Report   Final Research Report ( PDF )
  • 2014 Research-status Report
  • Research Products

    (4 results)

All 2015 2014

All Presentation (4 results) (of which Int'l Joint Research: 1 results)

  • [Presentation] 真核生物複製ヘリカーゼCMG複合体のクロマチン基質に対する活性2015

    • Author(s)
      日詰光治、矢倉勝、遠藤静子、荒木弘之
    • Organizer
      第38回日本分子生物学会
    • Place of Presentation
      神戸
    • Year and Date
      2015-12-01
    • Related Report
      2015 Annual Research Report
  • [Presentation] 複製ヘリカーゼCMG複合体によるクロマチン鎖開裂反応2015

    • Author(s)
      日詰光治、遠藤静子、荒木弘之
    • Organizer
      第23回DNA複製・組換え・修復ワークショップ
    • Place of Presentation
      焼津
    • Year and Date
      2015-10-21
    • Related Report
      2015 Annual Research Report
  • [Presentation] Nucleosome on helices activity of CMG complex2015

    • Author(s)
      Hizume, K., Endo, S. and Araki, H.
    • Organizer
      Eukaryotic DNA replication & genome maintenance
    • Place of Presentation
      Cold Spring Harbor, NY, USA
    • Year and Date
      2015-09-02
    • Related Report
      2015 Annual Research Report
    • Int'l Joint Research
  • [Presentation] MCM-DNA複合体の原子間力顕微鏡による可視化解析2014

    • Author(s)
      Kohji Hizume, Hiroyuki Araki
    • Organizer
      第37回日本分子生物学会年会
    • Place of Presentation
      横浜(パシフィコ横浜)
    • Year and Date
      2014-11-25
    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2017-05-10  

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