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Elucidation of the molecular basis of sex determination in Diospyros species by means of NGS technologies

Research Project

Project/Area Number 26660025
Research Category

Grant-in-Aid for Challenging Exploratory Research

Allocation TypeMulti-year Fund
Research Field Horticultural science
Research InstitutionKyoto University

Principal Investigator

Tao Ryutaro  京都大学, 農学研究科, 教授 (10211997)

Co-Investigator(Kenkyū-buntansha) 河井 崇  京都大学, 農学研究科, 助教 (90721134)
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2016: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2015: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywords果樹 / 果樹ゲノム / 雌雄異株性 / 園芸
Outline of Final Research Achievements

A combination of NGS technologies and evolutionary approaches detected a Y-specific sex-determinant candidate small RNA gene, OGI targeting the autosomal MeGI gene in Diospyros lotus. Then, the molecular basis underlying sex determination in polyploid D. kaki was investigated. OGI appeared to be indispensable for the monoecious phenotype producing male flowers in D. kaki, as in dioecious diploid D. lotus. However, the existence of OGI alleles did not always lead to production of male flowers. A series of NGS analyses indicated that there is an additional layer of regulation in the form of DNA methylation of the MeGI promoter, which seemed to be associated with the production of both male and female flowers in genetically male trees in D. kaki. Concurrently, in Y-chromosome-carrying trees, the expression of OGI is silenced by the presence of a SINE-like insertion in the OGI promoter.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (24 results)

All 2017 2016 2015 2014 Other

All Int'l Joint Research (1 results) Journal Article (6 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 5 results,  Open Access: 5 results,  Acknowledgement Compliant: 4 results) Presentation (14 results) (of which Int'l Joint Research: 8 results,  Invited: 8 results) Remarks (3 results)

  • [Int'l Joint Research] UC Davis(米国)

    • Related Report
      2016 Annual Research Report
  • [Journal Article] A male determinant gene in diploid dioecious Diospyros, OGI, is required for male flower production in monoecious individuals of oriental persimmon (D. kaki)2016

    • Author(s)
      Akagi T, Kawai T, Tao R
    • Journal Title

      Scientia Horticulturae

      Volume: 213 Pages: 243-251

    • DOI

      10.1016/j.scienta.2016.10.046

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] Epigenetic Regulation of the Sex Determination Gene MeGI in Polyploid Persimmon2016

    • Author(s)
      Akagi T, Henry IM, Kawai T, Comai L, Tao R
    • Journal Title

      The Plant Cell

      Volume: 28 Issue: 12 Pages: 2905-2915

    • DOI

      10.1105/tpc.16.00532

    • Related Report
      2016 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research / Acknowledgement Compliant
  • [Journal Article] The Relationship Between a Maleness-associated Region in <i>Diospyros lotus</i> L. and Maleness of Persimmon (<i>D. kaki</i> Thunb.) Cultivars2015

    • Author(s)
      梶田啓・赤木剛士・山根久代・田尾龍太郎・米森敬三
    • Journal Title

      Horticultural Research (Japan)

      Volume: 14 Issue: 2 Pages: 121-126

    • DOI

      10.2503/hrj.14.121

    • NAID

      130005086512

    • ISSN
      1347-2658, 1880-3571
    • Related Report
      2015 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Journal Article] カキの性決定2015

    • Author(s)
      赤木剛士・田尾龍太郎
    • Journal Title

      果実日本

      Volume: 71 Pages: 24-26

    • Related Report
      2015 Research-status Report
  • [Journal Article] Development of Molecular Markers Associated with Sexuality in <i>Diospyros lotus</i> L. and Their Application in <i>D. kaki</i> Thunb.2014

    • Author(s)
      Akagi, T., K. Kajita, T. Kibe, H. Morimura, T. Tsujimoto, S. Nishiyama, T. Kawai, H. Yamane, and R. Tao
    • Journal Title

      Journal of the Japanese Society for Horticultural Science

      Volume: 83 Issue: 3 Pages: 214-221

    • DOI

      10.2503/jjshs1.CH-109

    • NAID

      130004510823

    • ISSN
      1882-3351, 1882-336X
    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons2014

    • Author(s)
      Akagi, T., Isabelle M. Henry, R. Tao, and L. Comai
    • Journal Title

      Science

      Volume: 346 Pages: 646-650

    • Related Report
      2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] Transcriptomic analysis to dissect flower sexuality determination mechanism in Diospyros kaki2017

    • Author(s)
      Yang, Ho-Wen・赤木剛士・田尾龍太郎
    • Organizer
      園芸学会春季大会
    • Place of Presentation
      日本大学生物資源学部
    • Year and Date
      2017-03-19
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sex determination in Diospyros2016

    • Author(s)
      Tao, R.
    • Organizer
      ISHS VI International Symposium on Persimmon
    • Place of Presentation
      Valencia, Spain
    • Year and Date
      2016-10-16
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Possible applications of the current knowledge of sex determination in Diospyros to persimmon breeding and culture2016

    • Author(s)
      Tao, R. and T. Akagi
    • Organizer
      ISHS VI International Symposium on Persimmon
    • Place of Presentation
      Valencia, Spain
    • Year and Date
      2016-10-16
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Current progress in the studies on sex determination in Diospyros2016

    • Author(s)
      Tao, R.
    • Organizer
      The Second Asian Horticultural Congress
    • Place of Presentation
      Chengdu, China
    • Year and Date
      2016-09-26
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 木本性植物における性決定機構の多様性と一般性 ~カキとキウイフルーツと…2016

    • Author(s)
      赤木剛士
    • Organizer
      日本植物学会
    • Place of Presentation
      沖縄コンベンションセンター
    • Year and Date
      2016-09-16
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] カキ属の性決定を統御する転写因子2016

    • Author(s)
      赤木剛士
    • Organizer
      園芸学会秋季大会
    • Place of Presentation
      名城大学
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] エピジェネティックな記憶によるカキの可塑的な性決定(第2報)2016

    • Author(s)
      赤木剛士・Isabelle M. Henry・Luca Comai・田尾龍太郎
    • Organizer
      園芸学会秋季大会
    • Place of Presentation
      名城大学
    • Year and Date
      2016-09-10
    • Related Report
      2016 Annual Research Report
  • [Presentation] カキ属植物における「柔軟な」性決定~遺伝的制御からエピジェネティック性への進化2016

    • Author(s)
      赤木剛士
    • Organizer
      日本遺伝学会
    • Place of Presentation
      国立遺伝学研究所
    • Year and Date
      2016-09-07
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] A review of the current progress in our studies on sex determination in Diospyros2016

    • Author(s)
      Tao, R.
    • Organizer
      ISHS International Workshop on Floral Biology and S-Incompatibility in Fruit Species
    • Place of Presentation
      Murcia, Spain
    • Year and Date
      2016-05-23
    • Related Report
      2016 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Evolution of a flexible sex determination system in polyploid persimmon.2016

    • Author(s)
      Akagi, T., I. M. Henry, R. Tao and L. Comai
    • Organizer
      Plant and Animal Genome Conference XXIII
    • Place of Presentation
      San Diego, California
    • Year and Date
      2016-01-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] Variation on a theme: diploid and hexaploid persimmon regulate sex in slightly different ways2016

    • Author(s)
      Henry, I. M., T. Akagi, R. Tao and L. Comai
    • Organizer
      Plant and Animal Genome Conference XXIII
    • Place of Presentation
      San Diego, California
    • Year and Date
      2016-01-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research
  • [Presentation] 柿における性の成立と揺らぐ性への進化2016

    • Author(s)
      赤木剛士
    • Organizer
      植物科学シンポジウム
    • Place of Presentation
      東京大
    • Related Report
      2016 Annual Research Report
    • Invited
  • [Presentation] Successful utilization of the nex-generation sequencing technologies to identify sex determinant in persimmons: A possible application for kiwifruit study2015

    • Author(s)
      Akagi, T. and R. Tao
    • Organizer
      International Symposium on Genetic Bases for Kiwifruit Breeding
    • Place of Presentation
      Takamatsu, Japan
    • Year and Date
      2015-12-09
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Sexuality in Diospyros species2015

    • Author(s)
      Tao, R.
    • Organizer
      Interrnational symposium of correlative gene system; Establishing next-generation genetics
    • Place of Presentation
      Nara, Japan
    • Year and Date
      2015-05-29
    • Related Report
      2015 Research-status Report
    • Int'l Joint Research / Invited
  • [Remarks] 京都大学大学院農学研究科農学専攻果樹園芸学研究室

    • URL

      http://www.pomology.kais.kyoto-u.ac.jp/

    • Related Report
      2016 Annual Research Report
  • [Remarks] 京都大学アカデミックデイ2015 -果樹のライフサイクル研究の最前線-

    • URL

      http://research.kyoto-u.ac.jp/academic-day/2015/19/

    • Related Report
      2015 Research-status Report
  • [Remarks] 植物で初、雌雄異株性の性決定因子を柿において発見

    • URL

      http://www.kyoto-u.ac.jp/ja/research/research_results/2014/141031_1.html

    • Related Report
      2014 Research-status Report

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Published: 2014-04-04   Modified: 2022-02-16  

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