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Bacterial catabolic system for the prevention of dead-end product formation

Research Project

Project/Area Number 26850046
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Applied microbiology
Research InstitutionNagaoka University of Technology

Principal Investigator

KAMIMURA Naofumi  長岡技術科学大学, 工学研究科, 助教 (50646528)

Research Collaborator HIGUCHI Yudai  長岡技術科学大学, 工学研究科・生物統合工学専攻
TAKENAMI Hiroki  長岡技術科学大学, 工学研究科
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2016: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2015: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2014: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Keywordsβ-アリールエーテル / リグニン / Sphingobium属細菌 / カルボキシラーゼ / アセトフェノン / バニリン酸 / Sphingomonadaceae / 細胞毒性 / AraC型転写制御因子 / beta-アリールエーテル / デッドエンド / バクテリア
Outline of Final Research Achievements

In Sphingobium sp. strain SYK-6, a model bacterium for the lignin catabolism, the beta-arylether dimer is converted to vanilloyl acetic acid via the reductive ether cleavage. The resultant vanilloyl acetic acid is then subjected a non-enzymatic decarboxylation to generate acetovanillone. Here, we determined the catabolic pathway of acetovanillone and also identified the genes responsible for the first step of acetvaillone catabolism. In SYK-6, acetovanillone is initially carboxylated to produce vanilloyl acetic acid by a multiple component enzyme, AcdABCDEF, and then further converted to vanillate via the formation of coenzyme A ester. These findings enable us to understand the overview of beta-arylether catabolic pathway for the first time, and are also valuable for the biological lignin valorization.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (10 results)

All 2017 2016 2015 2014 Other

All Presentation (9 results) Remarks (1 results)

  • [Presentation] Characterization of the catabolic pathway and genes for acetovanillone in Sphingobium sp. strain SYK-62017

    • Author(s)
      樋口 雄大
    • Organizer
      STI-GIGAKU 2017 international conference
    • Place of Presentation
      新潟県長岡市
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sphingobium sp. SYK-6株におけるβ-aryl ether代謝中間体・β-hydroxypropiovanillone変換酵素遺伝子の機能解析2017

    • Author(s)
      樋口 雄大
    • Organizer
      2017年度 日本農芸化学会
    • Place of Presentation
      京都府京都市
    • Related Report
      2016 Annual Research Report
  • [Presentation] Investigation of the catabolic pathway for acetovanillone in Sphingobium sp. strain SYK-62016

    • Author(s)
      樋口 雄大
    • Organizer
      Lignobiotech IV symposium
    • Place of Presentation
      Spain, Madrid
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sphingobium属細菌におけるリグニン・β-アリールエーテル下流代謝系の解明2016

    • Author(s)
      樋口 雄大
    • Organizer
      第57回新潟生化学懇話会
    • Place of Presentation
      新潟県新潟市
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sphingobium sp. SYK-6株における acetovanillone変換酵素遺伝子群の機能と転写制御2016

    • Author(s)
      竹浪 寛樹
    • Organizer
      第61回リグニン討論会
    • Place of Presentation
      京都府京都市
    • Related Report
      2016 Annual Research Report
  • [Presentation] Sphingobium sp. SYK-6株におけるbeta-アリールエーテル代謝中間体の 代謝経路及び酵素遺伝子の解明2015

    • Author(s)
      樋口 雄大、竹浪 寛樹、青木 翔吾、上村 直史、菱山 正二郎、 笠井 大輔、片山 義博、福田 雅夫、政井 英司
    • Organizer
      第60回リグニン討論会
    • Place of Presentation
      筑波大学
    • Year and Date
      2015-11-04
    • Related Report
      2015 Research-status Report
  • [Presentation] Sphingobium sp. SYK-6株におけるアセトバニロン代謝系2014

    • Author(s)
      樋口 雄大、菖蒲田 透、上村 直史、原 啓文、笠井 大輔、片山 義博、福田 雅夫、政井 英司
    • Organizer
      環境微生物系学会合同大会2014
    • Place of Presentation
      静岡県浜松市アクトシティ浜松コングレスセンター、
    • Year and Date
      2014-10-21 – 2014-10-24
    • Related Report
      2014 Research-status Report
  • [Presentation] Sphingobium sp. SYK-6株におけるアセトバニロン代謝経路の同定2014

    • Author(s)
      樋口 雄大、菖蒲田 透、上村 直史、原 啓文、笠井 大輔、片山 義博、 福田 雅夫、政井 英司
    • Organizer
      第59回リグニン討論会
    • Place of Presentation
      福井工業大学、福井県福井市
    • Year and Date
      2014-09-11 – 2014-09-12
    • Related Report
      2014 Research-status Report
  • [Presentation] CHARACTERIZATION OF ACETOVANILLONE DEGRADATION PATHWAY IN SPHINGOBIUM SP. STRAIN SYK-62014

    • Author(s)
      Yudai Higuchi, Toru Shobuda, Naofumi Kamimura, Hirofumi Hara, Daisuke Kasai, Yoshihiro Katayama, Masao Fukuda, Eiji Masai
    • Organizer
      The 3rd International GIGAKU Conference in Nagaoka
    • Place of Presentation
      Nagaoka University of Technology, Nagaoka, Niigata
    • Year and Date
      2014-06-20 – 2014-06-22
    • Related Report
      2014 Research-status Report
  • [Remarks] 微生物代謝工学研究室 web page

    • URL

      http://bio.nagaokaut.ac.jp/~masai-l/index.html

    • Related Report
      2016 Annual Research Report

URL: 

Published: 2014-04-04   Modified: 2018-03-22  

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