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Genome structure and novel mutations in quinolone resistance-determining region genes of Ureaplasma spp.

Research Project

Project/Area Number 26870923
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeMulti-year Fund
Research Field Infectious disease medicine
Bacteriology (including mycology)
Research InstitutionResearch Institute, Osaka Medical Center for Maternal and Child Health

Principal Investigator

KAWAI YASUHIRO  地方独立行政法人大阪府立病院機構大阪府立母子保健総合医療センター(研究所), 免疫部門, 客員研究員 (10388936)

Co-Investigator(Renkei-kenkyūsha) YANAGIHARA Itaru  大阪母子医療センター研究所, 免疫部門, 部長 (60314415)
Research Collaborator NAKURA Yukiko  大阪母子医療センター研究所, 免疫部門, 研究補助員
Project Period (FY) 2014-04-01 – 2017-03-31
Project Status Completed (Fiscal Year 2016)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2016: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2015: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2014: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Keywordsウレアプラズマ / 全ゲノム解析 / 薬剤感受性 / キノロン耐性決定領域 / 病原因子 / オートファジー / 宿主細胞内 / 宿主細胞膜 / ウレアプラズマ病原因子 / 薬剤耐性
Outline of Final Research Achievements

Ureaplasma spp. cause several disorders, such as preterm delivery with lung infections in neonates. They are opportunistic pathogens that commonly inhabit the human urogenital tract; they lack a peptidoglycan layer and hydrolyze urea. The complete genome sequence of Ureaplasma parvum serovar 3, clinical strain SV3F4 isolated from a Japanese patient with a history of an infectious abortion, included a 727,289-bp contig with a G plus C content of 25.55%.
Out of 28 clinical Ureaplasma strains, we isolated 9 with high MICs of quinolones and found a single parC gene mutation, resulting in the change S83L. Novel mutations of ureaplasmal ParC (S83W and S84P) were independently found in one of the samples. Homology modeling of the ParC S83W mutant suggested steric hindrance of the quinolone-binding pocket (QBP), and de novo prediction of peptide structures revealed that the ParC S84P may break/kink the formation of the alpha 4 helix in the QBP.

Report

(4 results)
  • 2016 Annual Research Report   Final Research Report ( PDF )
  • 2015 Research-status Report
  • 2014 Research-status Report
  • Research Products

    (3 results)

All 2016 2015

All Journal Article (1 results) (of which Peer Reviewed: 1 results,  Open Access: 1 results,  Acknowledgement Compliant: 1 results) Presentation (2 results)

  • [Journal Article] In vitro activity of five quinolones and analysis of the quinolone resistance-determining regions of gyrA, gyrB, parC, and parE in Ureaplasma parvum and Ureaplasma urealyticum clinical isolates from perinatal patients in Japan.2015

    • Author(s)
      Kawai Y, Nakura Y, Wakimoto T, Nomiyama M, Tokuda T, Takayanagi T, Shiraishi J, Wasada K, Kitajima H, Fujita T, Nakayama M, Mitsuda N, Nakanishi I, Takeuchi M, Yanagihara I.
    • Journal Title

      Antimicrob Agents Chemother.

      Volume: 59 Issue: 4 Pages: 2358-2364

    • DOI

      10.1128/aac.04262-14

    • Related Report
      2015 Research-status Report 2014 Research-status Report
    • Peer Reviewed / Open Access / Acknowledgement Compliant
  • [Presentation] 本邦における周産期由来ウレアプラズマ属のキノロン系薬感受性および耐性遺伝子の検索・構造解析2016

    • Author(s)
      河合泰宏
    • Organizer
      日本化学療法学会
    • Place of Presentation
      神戸国際会議場 神戸市中央区港島中町6-9-1
    • Related Report
      2016 Annual Research Report
  • [Presentation] 本邦における周産期由来ウレアプラズマ属 のキノロン系薬感受性および耐性遺伝子の 解析2015

    • Author(s)
      河合泰宏
    • Organizer
      日本マイコプラズマ学会 第42回学術集会
    • Place of Presentation
      慶應義塾大学薬学部芝共立キャンパス(東京都港区芝公園1-5-30)
    • Year and Date
      2015-05-23
    • Related Report
      2015 Research-status Report

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Published: 2014-04-04   Modified: 2018-03-22  

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