• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2012 Fiscal Year Final Research Report

Studies on function of proteins synthesizing and hydrolyzing ATP

Planned Research

  • PDF
Project AreaWater plays a key role in ATP hydrolysis and ATP-driven functions of proteins
Project/Area Number 20118005
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Complex systems
Research InstitutionHiroshima University

Principal Investigator

SAMBONGI Yoshihiro  広島大学, 大学院・生物圏科学研究科, 教授 (10222027)

Project Period (FY) 2008 – 2012
Keywordsピロリン酸 / エンタルピー / 水分活性 / 極限環境微生物 / ATP
Research Abstract

This study is aimed at elucidating the molecular mechanism of extremophilic proteins that bind and hydrolyze ATP and its related compounds. Specifically, biochemical and biophysical experimentations have been carried out using ATPase and its related proteins from extremophies living in high salt concentrations and high and low temperatures, which seem to affect on the hydration conditions. In addition, collaborating with theoretical teams, molecular mechanisms for ATP binding and hydrolysis were investigated in the aspects of hydration. As a result, protein mechanisms have been clarified through ATP hydrolyzing proteins from halophiles and thermophiles.

  • Research Products

    (23 results)

All 2013 2012 2011 2010 2009 Other

All Journal Article (16 results) (of which Peer Reviewed: 16 results) Presentation (5 results) Book (1 results) Remarks (1 results)

  • [Journal Article] Oxidative phosphorylation in a thermophilic, facultative chemoautotroph, Hydrogenophilus thermoluteolus, living prevalently in geothermal niches Environ2013

    • Author(s)
      S. Wakai, M. Masanari, T. Ikeda, N. Yamaguchi, S. Ueshima, K. Watanabe, H. Nishihara, and Y. Sambongi
    • Journal Title

      Microbiol. Rep

      Volume: 5 Pages: 235-242

    • Peer Reviewed
  • [Journal Article] High thermal stability and unique trimer formation of cytochrome c' from thermophilic Hydrogenophilus thermoluteolus2012

    • Author(s)
      S. Fujii, M. Masanari, H. Inoue, M. Yamanaka, S. Wakai, H. Nishihara, Y. Sambongi
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: (in press)

    • Peer Reviewed
  • [Journal Article] Hydration state change of horse heart cytochrome corresponding to trifluoroacetic-acid-induced uc nfolding2012

    • Author(s)
      Y. Miyashita, T. Wazawa, G. Mogami, S. Takahashi, Y. Sambongi, and M. Suzuki
    • Journal Title

      Biophys. J

      Volume: 103 Pages: 163-172

    • Peer Reviewed
  • [Journal Article] Long-term observation of fluorescence of free single molecules to explore protein-folding energy landscapes2012

    • Author(s)
      K. Kamagata, T. Kawaguchi, Y. Iwahashi, A. Baba, K. Fujimoto, T. Komatsuzaki, Y. Sambongi, Y. Goto, and S. Takahashi
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Pages: 11525-11532

    • Peer Reviewed
  • [Journal Article] Thermal stability of cytochromes c_5 from pressure-sensitive Shewanella livingstonensis Biosci2011

    • Author(s)
      M. Masanari, S. Wakai, H. Tamegai, T. Kurihara, C. Kato, and Y. Sambongi
    • Journal Title

      Biotech. Biochem

      Volume: 75 Pages: 1856-1861

    • Peer Reviewed
  • [Journal Article] Heterologous synthesis of cytochrome c' by Escherichia coli is not dependent on the System I cytochrome c biogenesis machinery2011

    • Author(s)
      H. Inoue, S. Wakai, H. Nishihara, and Y. Sambongi
    • Journal Title

      FEBS J

      Volume: 278 Pages: 2341-2348

    • Peer Reviewed
  • [Journal Article] Conferment of folding ability to a naturally unfolded apocytochrome c through introduction of hydrophobic amino acid residues2011

    • Author(s)
      M. Yamanaka, M. Masanari, and Y. Sambongi
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 2313-2320

    • Peer Reviewed
  • [Journal Article] Effects of heme on the thermal stability of mesophilic and thermophilic cytochromes c: Comparison between experimental and theoretical results2011

    • Author(s)
      K. Oda, R. Kodama, T. Yoshidome, M. Yamanaka, Y. Sambongi, and M. Kinoshita
    • Journal Title

      J. Chem. Phys

      Volume: 134 Pages: 025101 (9 pages)

    • Peer Reviewed
  • [Journal Article] Hydration analysis of Pseudomonas aeruginosa cytochrome c551 upon acid unfolding by dielectric relaxation spectroscopy2010

    • Author(s)
      T. Wazawa, T. Miyazaki, Y. Sambongi, and M. Suzuki
    • Journal Title

      Biophys. Chem

      Volume: 151 Pages: 160-169

    • Peer Reviewed
  • [Journal Article] Comparative analysis of highly homologous cytochromes c_5 for stability and function Biosci2010

    • Author(s)
      S. Takenaka, S. Wakai, H. Tamegai, S. Uchiyama, and Y. Sambongi
    • Journal Title

      Biotech. Biochem

      Volume: 74 Pages: 1079-1083

    • Peer Reviewed
  • [Journal Article] Thiosulfate oxidation by a thermo-neutrophic hydrogen-oxidizing bacterium2010

    • Author(s)
      R. Sano, M. Kameya, S. Wakai, H. Arai, Y. Igarashi, M. Ishii, and Y. Sambongi
    • Journal Title

      Hydrogenobacter thermophilus Biosci. Biotech. Biochem

      Volume: 74 Pages: 892-894

    • Peer Reviewed
  • [Journal Article] Heme is not required for Aquifex aeolicus cytochrome c_<555> polypeptide folding2009

    • Author(s)
      M. Yamanaka, H. Mita, Y. Yamamoto, and Y. Sambongi
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: 73 Pages: 2022-2025

    • Peer Reviewed
  • [Journal Article] Hyperstability and crystal structure of cytochrome c_<555> from hyperthermophilic Aquifex aeolicus Acta Crystal2009

    • Author(s)
      M. Obuchi, K. Kawahara, D. Motooka, S. Nakamura, M. Yamanaka, T. Takeda, S. Uchiyama, Y. Kobayashi, T. kubo, and Y. Sambongi
    • Journal Title

      Section D: Biological Crystallography

      Volume: 65 Pages: 804-813

    • Peer Reviewed
  • [Journal Article] Effects of cysteine introduction into three homologous cytochromes c2009

    • Author(s)
      Y. Kobayashi, T. Sonoyama, T. Takeda, and Y. Sambongi
    • Journal Title

      Biosci. Biotech. Biochem

      Volume: 73 Pages: 1227-1229

    • Peer Reviewed
  • [Journal Article] Correlation between stability and redox potential of three homologous cytochromes from two thermophiles and one mesophile2009

    • Author(s)
      T. Takeda, T. Sonoyama, S.J. Takayama, H. Mita, Y. Yamamoto, and Y. Sambongi
    • Journal Title

      Bciosci. Biotech. Biochem

      Volume: 73 Pages: 366-371

    • Peer Reviewed
  • [Journal Article] Stability enhancement of cytochrome c through heme deprotonation and mutations2009

    • Author(s)
      T. Sonoyama, J. Hasegawa, S. Uchiyama, S. Nakamura, Y. Kobayashi, and Y. Sambongi
    • Journal Title

      Biophys. Chem

      Volume: 139 Pages: 37-41

    • Peer Reviewed
  • [Presentation] 高塩濃度下で機能する酵素の塩適応機構:活性の塩依存性とカチオンの役割2013

    • Author(s)
      若井暁,安部晶大,城所俊一,仲宗根薫,正木和夫,三本木至宏
    • Organizer
      農芸化学会
    • Place of Presentation
      仙台
    • Year and Date
      20130324-27
  • [Presentation] 好熱菌および常温菌由来シトクロム c'の熱安定性の比較研究2013

    • Author(s)
      藤井創太郎,井上寛基,政成美沙,若井暁,三本木至宏
    • Organizer
      第35回中四国支部講演会
    • Place of Presentation
      例会:高知
    • Year and Date
      2013-01-26
  • [Presentation] 深海性 Shewanella属細菌由来 cytochrome cの安定化機構の解明2012

    • Author(s)
      政成美沙,若井暁,加藤千明,栗原達夫,為我井秀行,三本木至宏
    • Organizer
      極限環境生物学会 2012
    • Place of Presentation
      東京
    • Year and Date
      20121201-02
  • [Presentation] 高度好塩性菌 Haloarcula japonicaのピロリン酸加水分解の熱力学的視点から見た塩適応2012

    • Author(s)
      若井暁,安部晶大,城所俊一,仲宗根薫,正木和夫,三本木至宏
    • Organizer
      極限環境生物学会 2012
    • Place of Presentation
      東京
    • Year and Date
      20121201-02
  • [Presentation] 高度好塩性菌 Haloarcula japonicaの無細胞抽出液によるピロリン酸加水分解の反応熱2012

    • Author(s)
      若井暁,安部晶大,正木和夫,城所俊一,三本木至宏
    • Organizer
      第25回日本 Archaea研究
    • Place of Presentation
      兵庫
    • Year and Date
      20120720-21
  • [Book] 食べ物も作る微生物たち.広島大学公開講座シリーズ 7「分子から見た生命の不思議」, 深宮齊彦編著2009

    • Author(s)
      三本木至宏
    • Total Pages
      60-81
    • Publisher
      広大生物圏出版会
  • [Remarks]

    • URL

      http://www.hiroshima-u.ac.jp/gsbs/kenkyu_syoka i/sanbongi/

URL: 

Published: 2014-08-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi