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2013 Fiscal Year Final Research Report

Regulatory mechanism of Xist RNA machinery

Planned Research

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Project AreaFunctional machinery for non-coding RNAs
Project/Area Number 21115005
Research Category

Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyushu University

Principal Investigator

SADO Takashi  九州大学, 生体防御医学研究所, 准教授 (70321601)

Project Period (FY) 2009-07-23 – 2014-03-31
Keywords非コードRNA / 発生・分化 / クロマチン / 遺伝学
Research Abstract

In this mission, we attempted to figure out the regulatory mechanisms of Xist RNA machinery, which has been known for many years to play a pivotal role in X chromosome inactivation in female mammals. Especially, we focused on the potential role of the proteins, which has been shown to localize to the inactive X, and their interacting partners in Xist RNA-mediated chromatin silencing. The findings indicates the importance of further studies of the potential role of factors involved in replication programming in the Xist RNA machinery. In addition, we have paved the way to our further understanding of the Xist RNA machinery by deriving various cell lines from the mice we established by knocking out a protein involved in the regulation of Xist RNA deposition to the inactive X.

  • Research Products

    (56 results)

All 2014 2013 2012 2011 2010 2009

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (44 results) (of which Invited: 6 results) Book (1 results)

  • [Journal Article] Histone variants enriched in oocytes enhance reprogramming to induced pluripotent stem cells2014

    • Author(s)
      Shinagawa T, Takagi T, Tsukamoto D, Tomaru C, Huynh LM, Sivaraman P, Kumarevel T, Inoue K, Nakato R, Katou Y, Sado T, Takahashi S, Ogura A, Shirahige K, Ishii S
    • Journal Title

      Cell Stem Cell

      Volume: 14(2) Pages: 217-227

    • DOI

      10.1016/j.stem.2013.12.015

    • Peer Reviewed
  • [Journal Article] The CENP-O complex requirement varies among different cell types2014

    • Author(s)
      Kagawa N, Hori T, Hoki Y, Hosoya O, Tsutsui K, Saga Y, Sado T, Fukagawa T
    • Journal Title

      Chromosome Res

      Volume: (Epub ahead of print)

    • Peer Reviewed
  • [Journal Article] Species-specific differences in X chromosome inactivation in mammals2013

    • Author(s)
      Sado T, Sakaguchi T
    • Journal Title

      Reproduction

      Volume: 146(4) Pages: R131-R139

    • DOI

      10.1530/REP-13-0173

    • Peer Reviewed
  • [Journal Article] Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway2013

    • Author(s)
      Nozawa RS, Nagao K, Igami KT, Shibata S, Shirai N, Nozaki N, Sado T, Kimura H, Obuse C
    • Journal Title

      Nat Struct Mol Biol

      Volume: 20(5) Pages: 566-573

    • DOI

      10.1038/nsmb.2532

    • Peer Reviewed
  • [Journal Article] Targeted gene silencing in mouse germ cells by insertion of a homologous DNA into a piRNA generating locus2013

    • Author(s)
      Yamamoto Y, Watanabe T, Hoki Y, Shirane K, Li Y, Ichiiyanagi K, Kuramochi-Miyagawa S, Toyoda A, Fujiyama A, Oginuma M, Suzuki H, Sado T, Nakano T, Sasaki H
    • Journal Title

      Genome Res

      Volume: 23(2) Pages: 292-299

    • DOI

      10.1101/gr.137224.112

    • Peer Reviewed
  • [Journal Article] Advances in understanding chromosome silencing by the long non-coding RNA Xist2013

    • Author(s)
      Sado T, Brockdorff N
    • Journal Title

      Philos Trans R Soc Lond B Biol Sci

      Volume: 368(1609) Pages: 20110325

    • DOI

      10.1098/rstb.2011.0325

    • Peer Reviewed
  • [Journal Article] Incomplete X-inactivation initiated by a hypomorphic Xist allele in the mouse2011

    • Author(s)
      Hoki Y, Ikeda R, Mise N, Sakata Y, Ohhata T, Sasaki H, Abe K, Sado T
    • Journal Title

      Development

      Volume: 138(13) Pages: 2649-2659

    • DOI

      10.1242/dev.061226

    • Peer Reviewed
  • [Journal Article] Soloway PD, Sasaki H. Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus2011

    • Author(s)
      Watanabe T, Tomizawa S, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, Iida N, Hoki Y, Murphy PJ, Toyoda A, Gotoh K, Hiura H, Arima T, Fujiyama A, Sado T, Shibata T, Nakano T, Lin H, Ichiyanagi K
    • Journal Title

      Science

      Volume: 332(6031) Pages: 848-852

    • DOI

      10.1126/science.1203919

    • Peer Reviewed
  • [Journal Article] MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germline2011

    • Author(s)
      Watanabe T, Chuma S, Yamamoto Y, Kuramochi-Miyagawa S, Totoki Y, Toyoda A, Hoki Y, Fujiyama A, Shibata T, Sado T, Noce T, Nakano T, Nakatsuji N, Lin H, Sasaki H
    • Journal Title

      Dev Cell

      Volume: 20(3) Pages: 364-375

    • DOI

      10.1016/j.devcel.2011.01.005

    • Peer Reviewed
  • [Journal Article] Impeding Xist expression from the active X chromosome improves mouse somatic cell nuclear transfer2010

    • Author(s)
      Inoue K, Kohda T, Sugimoto M, Sado T, Ogonuki N, Matoba S, Shiura H, Ikeda R, Mochida K, Fujii T, Sawai K, Otte AP, Tian XC, Yang X, Ishino F, Abe K, Ogura A
    • Journal Title

      Science.

      Volume: 330(6003) Pages: 496-499

    • DOI

      10.1126/science.1194174

    • Peer Reviewed
  • [Journal Article] Sex-reversed somatic cell cloning in the mouse2009

    • Author(s)
      Inoue K, Ogonuki N, Mekada K, Yoshiki A, Sado T, Ogura A
    • Journal Title

      J Reprod Dev

      Volume: 55(5) Pages: 566-569

    • Peer Reviewed
  • [Presentation] 哺乳類X 染色体のエピジェネティクス2013

    • Author(s)
      佐渡 敬
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20131203-05
    • Invited
  • [Presentation] アリル特異的ChIP-seq法によるマウス不活性化X 染色体の解析2013

    • Author(s)
      長尾恒治, 他6人
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20131203-05
  • [Presentation] SmcHD1 機能欠損胚におけるX 染色体不活性化2013

    • Author(s)
      榊原祐樹, 他2人
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20131203-05
  • [Presentation] Cloning and molecular characterization of mouse Hbix12013

    • Author(s)
      Sakaguchi T., et al.
    • Organizer
      第36回日本分子生物学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20131203-05
  • [Presentation] Silent chromatin domain formed by Xist RNA defective in silencing in the mouse embryo2013

    • Author(s)
      Sakata, Y., et al.
    • Organizer
      Riboclub 2013
    • Place of Presentation
      ケベック(カナダ)
    • Year and Date
      20130922-25
  • [Presentation] Defects in epijenethic regulation caused by partially dysfunctional Xist RNA2013

    • Author(s)
      Nakajima, T., et al.
    • Organizer
      Riboclub 2013
    • Place of Presentation
      ケベック(カナダ)
    • Year and Date
      20130922-25
  • [Presentation] A new Xist allele driven by a constitutive active promoter : implication for asymmetric expression of Xist in preimplantation mouse embryos2013

    • Author(s)
      Amakawa Y., et al.
    • Organizer
      Riboclub 2013
    • Place of Presentation
      ケベック(カナダ)
    • Year and Date
      20130922-25
  • [Presentation] 変異Xist RNA がもたらすX 染色体クロマチンドメインの変化2013

    • Author(s)
      酒田祐佳, 他3人
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      神奈川
    • Year and Date
      20130919-21
  • [Presentation] 部分的機能欠損Xist RNAによるエピジェネティック制御の異常2013

    • Author(s)
      中島達郎, 他3人
    • Organizer
      日本遺伝学会第85回大会
    • Place of Presentation
      神奈川
    • Year and Date
      20130919-21
  • [Presentation] Xist RNA の5'領域はRNA を核内に保持させる2013

    • Author(s)
      千木雄太, 他2人
    • Organizer
      第15回日本RNA学会
    • Place of Presentation
      愛媛
    • Year and Date
      20130724-26
  • [Presentation] 変異Xist RNA による不活性化クロマチンドメインの形成2013

    • Author(s)
      酒田祐佳
    • Organizer
      エピジェネティクス研究会
    • Place of Presentation
      奈良
    • Year and Date
      20130530-31
  • [Presentation] 機能欠損を持つXist RNA は不活性X 染色体のCpG メチル化を正常に構築できない2013

    • Author(s)
      中島達郎
    • Organizer
      エピジェネティクス研究会
    • Place of Presentation
      奈良
    • Year and Date
      20130530-31
  • [Presentation] Xist RNA defective in chromosome silencing in the mouse2012

    • Author(s)
      佐渡 敬
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-15
    • Invited
  • [Presentation] Defects in X-inactivation initiated by mutant Xist RNA in the mouse embryo2012

    • Author(s)
      佐渡 敬
    • Organizer
      第35回日本分子生物学会年会
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-14
    • Invited
  • [Presentation] Xist RNA の作用機序解明へ向けた遺伝学的アプローチ2012

    • Author(s)
      佐渡 敬
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-26
    • Invited
  • [Presentation] Xist の部分的機能欠損アレルによって不活性化を開始したX 染色体のCpG メチル化2012

    • Author(s)
      中島達郎
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-25
  • [Presentation] 変異型Xist RNA による不活性化クロマチンドメインの形成2012

    • Author(s)
      酒田祐佳
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-25
  • [Presentation] Epigenetic Regulation of the Mammalian X chromosome2012

    • Author(s)
      佐渡 敬
    • Organizer
      第71回日本癌学会学術総会
    • Place of Presentation
      北海道
    • Year and Date
      2012-09-21
    • Invited
  • [Presentation] 変異型Xist RNA が招くX 染色体不活性化の異常2012

    • Author(s)
      佐渡 敬
    • Organizer
      第14回日本RNA学会年会
    • Place of Presentation
      宮城
    • Year and Date
      2012-07-18
  • [Presentation] マウス雌生殖細胞におけるX 染色体の再活性化2011

    • Author(s)
      佐渡 敬
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都
    • Year and Date
      20110920-23
  • [Presentation] Xist RNA の5'領域のX染色体不活性化における役割2011

    • Author(s)
      酒田祐佳, 他4名
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都
    • Year and Date
      20110920-23
  • [Presentation] X-inactivation initiated by Xist RNA defective in silencing in the mouse embryo2011

    • Author(s)
      T. Sado
    • Organizer
      3rd X-inactivation Conference
    • Place of Presentation
      オックスフォード(UK)
    • Year and Date
      20110720-24
  • [Presentation] X-inactivation in female mice deficient for macroH2A1 and macroH2A22011

    • Author(s)
      T. Sakaguchi, et al
    • Organizer
      3rd X-inactivation Conference
    • Place of Presentation
      オックスフォード(UK)
    • Year and Date
      20110720-24
  • [Presentation] X-inactivation triggeredby Xist RNA deleted for the 5' Sequencein the mouse embryo2011

    • Author(s)
      Y. Sakata, et al
    • Organizer
      3rd X-inactivation Conference
    • Place of Presentation
      オックスフォード(UK)
    • Year and Date
      20110720-24
  • [Presentation] Incomplete X-inactivation Initiated by a Hypomorphic Xist Allele in the Mouse2011

    • Author(s)
      T. Sado, et al
    • Organizer
      The 16th annual meeting of the RNA society and the RNA society of Japan 13th annual meeting
    • Place of Presentation
      京都
    • Year and Date
      20110614-18
  • [Presentation] Xist RNA の5'領域のX 染色体不活性化における役割2011

    • Author(s)
      酒田祐佳, 他4名
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本
    • Year and Date
      20110519-20
  • [Presentation] ヒト不活性化X 染色体に局在する新規タンパク質のマウスホモログの単離と解析2011

    • Author(s)
      坂口武久, 他4名
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本
    • Year and Date
      20110517-20
  • [Presentation] Xist RNA の機能不全が招くX 染色体不活性化の異常2010

    • Author(s)
      佐渡 敬
    • Organizer
      第33回日本分子生物学会年会, 第83回日本生化学会大会
    • Place of Presentation
      兵庫
    • Year and Date
      20101207-10
  • [Presentation] Xist RNAの5'領域のX染色体不活化における役割.2010

    • Author(s)
      酒田祐佳, 他4名
    • Organizer
      第33回日本分子生物学会年会, 第83回日本生化学会大会
    • Place of Presentation
      兵庫
    • Year and Date
      20101207-10
  • [Presentation] Xist RNA の作用機序の理解へ向けて2010

    • Author(s)
      佐渡 敬
    • Organizer
      日本遺伝学会 第82回大会
    • Place of Presentation
      北海道
    • Year and Date
      20100920-23
  • [Presentation] Xist RNAの5'領域のX染色体不活化における役割2010

    • Author(s)
      酒田祐佳, 他4名
    • Organizer
      日本遺伝学会 第82回大会
    • Place of Presentation
      北海道
    • Year and Date
      20100920-23
  • [Presentation] X 染色体不活性化の部分的機能欠損変異の解析2010

    • Author(s)
      佐渡 敬, 他6名
    • Organizer
      第12回 日本RNA学会年会
    • Place of Presentation
      東京
    • Year and Date
      20100727-29
  • [Presentation] Xist RNAの5'領域のX染色体不活化における役割2010

    • Author(s)
      酒田祐佳, 他4名
    • Organizer
      第4回 日本エピジェネティクス研究会
    • Place of Presentation
      鳥取
    • Year and Date
      20100528-29
  • [Presentation] 胚体外組織における父由来X 染色体のインプリント2010

    • Author(s)
      尼川裕子, 他4名
    • Organizer
      第4回 日本エピジェネティクス研究会
    • Place of Presentation
      鳥取
    • Year and Date
      20100528-29
  • [Presentation] A Partial Loss of Function Mutation in the Mechanism of X Chromosome Inactivation2010

    • Author(s)
      Sado, T
    • Organizer
      The 19th CDB Meeting
    • Place of Presentation
      兵庫
    • Year and Date
      20100510-12
  • [Presentation] A partial loss of function mutation in the mechanism of X chromosome inactivation2010

    • Author(s)
      Hoki, Y., et al.
    • Organizer
      Keystone Symposium (A8)
    • Place of Presentation
      タオス(USA)
    • Year and Date
      20100117-22
  • [Presentation] Prolonged expression of Xist retards X chromosome reactivation in mouse germ line2010

    • Author(s)
      Amakawa, Y., et al.
    • Organizer
      Keystone Symposium (A8)
    • Place of Presentation
      タオス(USA)
    • Year and Date
      20100117-22
  • [Presentation] A partial loss of function mutation in the mechanism of X chromosome inactivation2009

    • Author(s)
      保木裕子, 他3名
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      兵庫
    • Year and Date
      20091209-12
  • [Presentation] Prolonged expression of Xist retards X chromosome reactivation in mouse germ line2009

    • Author(s)
      尼川裕子, 他3名
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      神奈川
    • Year and Date
      20091209-12
  • [Presentation] 哺乳類のメス生殖細胞における不活性X染色体の再活性化2009

    • Author(s)
      佐渡 敬
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      兵庫
    • Year and Date
      20091021-23
  • [Presentation] マウスのメス生殖細胞におけるXist発現消失時期の遅延はX染色体再活性化を遅らせる2009

    • Author(s)
      尼川裕子, 他3名
    • Organizer
      日本遺伝学会第81回大会
    • Place of Presentation
      長野
    • Year and Date
      20090916-18
  • [Presentation] X染色体不活性化機構の部分的機能欠損変異2009

    • Author(s)
      保木裕子, 他3名
    • Organizer
      日本遺伝学会第81回大会
    • Place of Presentation
      長野
    • Year and Date
      20090916-18
  • [Presentation] Toward the understanding of molecular events underlying X-inactivation2009

    • Author(s)
      Sado, T
    • Organizer
      The 24th Naito Conference on Nuclear Dynamics and RNA[II]
    • Place of Presentation
      北海道
    • Year and Date
      20090623-26
    • Invited
  • [Presentation] X染色体の不活性化の分子機構2009

    • Author(s)
      佐渡 敬
    • Organizer
      第138回染色体研究会
    • Place of Presentation
      東京
    • Year and Date
      2009-06-13
  • [Book] 卵子学 (森崇英総編集) 第IV-14章: 卵子とX 染色体2011

    • Author(s)
      佐渡 敬

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Published: 2015-06-25  

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