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1994 Fiscal Year Final Research Report Summary

Study on the development of the DNA databank

Research Project

Project/Area Number 04041112
Research Category

Grant-in-Aid for international Scientific Research

Allocation TypeSingle-year Grants
SectionField Research
Research InstitutionNational Institute of Genetics (NIG)

Principal Investigator

GOJOBORI Takashi  NIG,DNA Research Center, 遺伝情報研究センター, 教授 (50162136)

Co-Investigator(Kenkyū-buntansha) BERNARDI G.  Jack Monod Institute, ジャックモノー研究所, 教授
GO Mitiko  Nagoya Univ., Fac.Science, 理学部, 教授 (70037290)
YOSHIKAWA Hiroshi  Nara Advanced Institute of Science and Technology, バイオサイエンス研究科, 研究科長 (70019876)
ISONO Katsumi  Kobe Univ., Fac.Science, 理学部, 教授 (70011640)
IMANISHI Tadashi  NIG,DNA Research Center, 遺伝情報研究センター, 助手 (80270461)
IKEO Kazuho  NIG,DNA Research Center, 遺伝情報研究センター, 助手 (20249949)
SAITOU Naruya  NIG,Department of Population Genetics, 集団遺伝研究系, 助教授 (30192587)
TATENO Yoshio  NIG,DNA Research Center, 遺伝情報研究センター, 教授 (00202424)
Project Period (FY) 1992 – 1994
KeywordsDNA / Nucleotide sequence / Databank / Database / Molecular evolution / Gene / Computer / Molecular biology
Research Abstract

The international nucleotide sequence database is constructed through the international collaboration among Europe (EBI ; European Bioinformatics Institute), U.S.A.(NCBI ; National Center for Biotechnology Information), and Japan (DDBJ ; DNA Data Bank of Japan). To proceed this international collaboration more smoothly, two international meetings (advisory and collaborative) are held annually. Because the originally planned two meetings were not held within this fiscal year (planned to be held in April 1995), we instead went to EBI and NCBI for discussing collaborative issues. We also visited the newly created NCGR (National Center for Genome Resources) at Santa Fe to find out their current situation and future.
It turned out that NCGR,though its name implies, is not a governmental organization, but a mere private company. However, they does receive a grant from DOE (Department of Energy) for constructing GSDB (Genome Sequence Data Base). We discussed with NCGR and NCBI in detail about the future of USA DNA databanks.
The situation in Europe is much better. EBI is now constructing a new building at the Genome Park, Hinxton, and research activity as well as service activity will be strengthened in the near future.

  • Research Products

    (20 results)

All Other

All Publications (20 results)

  • [Publications] Gojobori,T.: "Molecular evolution of serine protease and its inhibitor with special reference to domain evolution." Philosophical Transactions:Biological Sciences,The Royal Society. 344. 411-415 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ina,Y.: "Statistical analysis of nucleotide sequences of the hemaggutinin gene of human influenza A viruses." Proc.Natl.Acad.Sci.,U.S.A.91. 8388-8392 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Gojobori,T.: "Evolution of pathogenic viruses with special reference to the rates of synonymous and nonsynonymous substitutions." Jpn.J.Genet.69. 481-488 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Perriere,G.: "NRSub:a non-redundant data base for the Bacillus subtilis genome.Nucleic Acids Research." Nucleic Acids Research. 22. 5525-5529 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ikeo K.: "Different Evolutionary Histories of Kringle and Protease Domains in Serine Proteases-A Typical Example of Domain Evolution." Journal of Mol.Evol.40. 331-336 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shin-i,T.: "DNA Data Bank of Japan and its Bioinformatic Activities." The Biochemist. (印刷中).

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitakami,H.: "Toward unification taxonomy databases in a distributed computer environment.in "The Stanford conference,ISMB94"" AAAI Press, 389 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitakami,H.: "Building and Search System for a Large-Scale DNA Database.in "Advances in Mol.Bioinformatics"" IOS Press, 257 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitakami,H.: "YAMATO AND ASUKA:DNA Database Management System in "Proceedings of the 28th Annual Hawaii Int'l Conf.on System Sciences"" IEEE Computer Society Press, 362 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ren F.: "Molecular Evolutionary Phylogenetic Trees Based on Minimum Description Length Principle.in "Proceedings of the 28th Annual Hawaii Int'l Conf.on System Sciences"" IEEE Computer Society Press, 362 (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Gojobori, T.: "Molecular evolution of serine protease and its inhibitor with special reference to domain evolution." Philosophical Transactions : Biological Sciences, The Royal Society. 344. 411-415 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ina, Y.: "Statistical analysis of nucleotide sequences of the hemagglutinin gene of human influenza A viruses." Proc.Natl.Acad.Sci., U.S.A.91. 8388-8392 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Gojobori, T.: "Evolution of pathogenic viruses with special reference to the rates of synonymous and nonsynonymous substitutions." Jpn.J.Genet.69. 481-488 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Perriere, G.: "NRSub : a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Research" Nucleic Acids Research.22. 5525-5529 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ikeo K.: "Different Evolutionary Histories of Kringle and Protease Domains in Serine Proteases-A Typical Example of Domain Evolution." Journal of Mol.Evol.40. 331-336 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shin-i, T.: "DNA Data Bank of Japan and its Bioinformatic Activities." The Biochemist. (in press).

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitakami, H.: AAAI Press. Toward unification of taxonomy databases in a distributed computer environment. in "The Stanford conference, ISMB94", 389 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitakami, H.: IOS Press. Building and Search System for a Large -Scale DNA Database. in "Advances in Mol.Bioinformatics", 257 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitakami, H.: IEEE Computer Society Press. YAMATO AND ASUKA : DNA Database Management System. in "Proceedings of the 28th Annual Hawaii Int'l Conf. on System Sciences", 362 (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ren F.: IEEE Computer Society Press. Molecular Evolutionary Phylogenetic Trees Based on Minimum Description Length Principle. in "Proceedings of the 28th Hawaii Int'l Conf. on System Sciences", 362 (1995)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1996-04-15  

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