• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

1993 Fiscal Year Final Research Report Summary

Systematic sequencing of the Escherichia coli genome

Research Project

Project/Area Number 04305005
Research Category

Grant-in-Aid for Co-operative Research (A)

Allocation TypeSingle-year Grants
Research Field 広領域
Research InstitutionUniversity of Electro-Communication

Principal Investigator

MIZOBUCHI Kiyoshi  University of Electro-Communications, Faculty of Electro-Communications Professor, 電気通信学部, 教授 (00092346)

Co-Investigator(Kenkyū-buntansha) MORI Hirotada  Nara Advanced Institute of Science and Technology, Department of Biological Scie, 助教授 (90182203)
MIZUNO Takeshi  University of Nagoya, Faculty of Agriculture, Professor, 農学部, 教授 (10174038)
HORIUCHI Takashi  National Institute for Basic Biology, Professor, 教授 (60108644)
NAKAMURA Yoshikazu  University of Tokyo, Institute of Medical Science, Associate Professor, 医科学研究所, 助教授 (40114590)
AIBA Hiroji  University of Nagoya, Faculty of Science, Professor, 理学部, 教授 (20025662)
Project Period (FY) 1992 – 1993
KeywordsE.coli / Genome analysis / Kohara clones / Data base
Research Abstract

The genome of Escherichia coli strain K-12 consists of a circular DNA molecule of 4,700 kilobases (kb), in which about 4,000 genes have been estimated to be present. At preset, 2,300-kb nucleotide sequences in sum have fragmentally been analyzed. Previously, we have determined the nucleotide sequence of a contiguous 274 kb corresponding to the 0-6 min region of the chromosome. Using the orderd clones of Kohara, our sequencing efforts have being extended to the 12 min region. In this project, we have determined newly a total of 149,188 bp. Combination of this sequence and the known sequences indicates that sequencing of 226 out of the 274 kb(82.5%) in the 6-12 min region has been completed. Analysis of the new sequence identified 86 potential open reading frames, whose amino acid sequences showed significant similarity to other reported sequences. The sequence also contains at least 5 IS elements and 2 types of unique repetitive sequences consisting of 3x- and 5x-93 bp, respectively.

  • Research Products

    (20 results)

All Other

All Publications (20 results)

  • [Publications] Yura,T.: "Systematic sequencing of the Escherichia coli genome:analysis of the 0-2.4 min region" Nucleic Acids Res.20. 3305-3308 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Fujita,N.: "Systematic sequencing of the Escherichia coli genome:analysis of the 2.4-4.1 min(110,917-193,643 bp)" Nucleic Acids Res.23(in press). (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kasai,T.: "Efficient large-scale sequencing of the Escherichia coli genome:implement of transposon- and PCR-based strategy of the analysis of ordered phage clones" Nucleic Acids Res.20. 6509-6515 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hanamura,A.: "A new aspect of transcriptional control of the Escherichia coli crp gene:positive autoregulation" Mol.Microbiol.6. 2489-2497 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawakami,K.: "Differential regulation of two genes encoding lysyl-tRNA synthetase for a lysS null mutation" Mol.Microbiol.6. 1739-1746 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nakahigashi,K.: "Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone" J.Bacteriol.174. 7352-7359 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Iida,A.: "Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli K-12" J.Bacteriol.175. 5375-5383 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nakashima,K.: "Signal transduction between the two components involved in the regulation of the kdpABC operon in Escherichia coli:phosphorylation-dependent functioning of the positive regulator,KdpE,into liposome" Mol.Microbiol.7. 109-116 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishimura,K.: "Cloning and sequencing of the hemE gene encoding uroporphyrinogen III decarboxylase of Escherichia coli K-12" Gene. 133. 109-113 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yuzawa,H.: "Heat induction of sigma^<32> synthesis mediated by mRNA secondary structure:a primary step of the heat shock response in Escherichia coli" Nucleic Acids Res.21. 5449-5455

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yura, T.: "Systematic sequencing of the Escherichia coli genome : analysis of the 0-2.4 min region." Nucleic Acids Res.20. 3305-3308 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fujita, N.: "Systematic sequencing of the Escherichia coli genome : analysis of the 2.4-4.1 min (110,917-193,643 bp)." Nucleic Acids Res.(in press). (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kasai, T.: "Efficient large-scale sequencing of the Escherichia coli genome : implement of transposon- and PCR-based strategy of the analysis of ordered phage clones." Nucleic Acids Res.20. 6509-6515 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hanamura, A.: "A new aspect of transcriptional control of the Escherichia coli crp gene : positive autoregulation." Mol.Microbiol.6. 2489-2497 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawakami, K.: "Differential regulation of two genes encoding lysyl-tRNA synthetase for a lysS null mutation." Mol.Microbiol.6. 1739-1746 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nakahigashi, K.: "Isolation and characterization of a light-sensitive mutant of Escherichia coli K-12 with a mutation in a gene that is required for the biosynthesis of ubiquinone." J.Bacteriol.174. 7352-7359 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Iida, A.: "Identification and characterization of the tktB gene encoding a second transketolase in Escherichia coli K-12." J.Bacteriol.175. 5375-5383 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nakashima, K.: "Signal transduction between the two components involved in the regulation of the kdpABC operon in Escherichia coli : phosphorylation-dependent functioning of the positive regulator, KdpE, into liposome." Mol.Microbiol.7. 109-116 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishimura, K.: "Cloning and sequencing of the hemE gene encoding uroporphyrinogen III decarboxylase of Escherichia coli K-12." Gene. 133. 109-113 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yuzawa, H.: "Heat induction of sigma^<32> synthesis mediated by mRNA secondary structure : a primary step of the heat shock response in Escherichia coli." Nucleic Acids Res.21. 5449-5455 (1993)

    • Description
      「研究成果報告書概要(欧文)」より

URL: 

Published: 1995-03-27  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi