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1994 Fiscal Year Final Research Report Summary

Development of a system for analysis of information of breeding for whole genome selection and its automation

Research Project

Project/Area Number 04556001
Research Category

Grant-in-Aid for Developmental Scientific Research (B)

Allocation TypeSingle-year Grants
Research Field Breeding science
Research InstitutionThe University of Tokyo

Principal Investigator

UKAI Yasuo  The Univ.of Tokyo, Fac.Agr., Professor, 農学部, 教授 (80240729)

Co-Investigator(Kenkyū-buntansha) NINOMIYA Seisi  Natl.Inst.Agro-Envir.Sci., MAFF,Dept.Env.Control Head of Laboratory, 環境管理部, 研究室長
TAKANO Yasushi  The Univ.of Tokyo, Fac.Agr., Assistant, 農学部, 助手 (40012009)
UEMURA Kenji  The Univ.of Tokyo, Fac.Agr., Associate Professor, 農学部, 助教授 (60012043)
TAKEDA Genkichi  The Univ.of Tokyo, Fac.Agr., Professor, 農学部, 教授 (90134501)
SAIO Kenjiro  The Univ.of Tokyo, Emer.Professor, 名誉教授 (80011831)
Project Period (FY) 1992 – 1994
KeywordsGenome / RFLP / DNA polymorphism / Inheritance / Selection / Breeding system / Linkage map / Program
Research Abstract

A computer program MAPL ver 3.0 for construction of DNA marker(RFLP and RAPD)linkage map and QTL(quantitative trait loci)analysis was developed and announced in a journal(Breeding Science). The program can be used for F2.backcrosses, and doubled haploid lines in autogamous plant species and allogamous species as well. Graphical genotypes can be easily obtained by MAPL.The program has been utilized for construction of the first DNA marker linkage map of rice in Japan and is being used for linkage test and mapping in many other crops. Theoretical analysis was made on the effects of mis-classification of a trait and existence of a lethal factor on the estimation of recombination fraction and QTL analysis. A method for detection of additive and dominance effects for each QTL separately in the interval mapping of F2 population was developed.
A synteny DNA marker linkage map of rice was constructed after combining of a map in Japan from a cross between varieties of Oryza sativa and one form a between-species cross made by American researcher. QTL analysis was made by employing fixed lines from a cross of Japonica x Indica rice variety and QTL of panicle number and panicle length were located on chromosomes with use of graphical genotype method. To make the precision in measuring of a quantitative trait higher development of efficient methods for getting and analysing information involved in morphological characters was attempted. Using elliptic Fourie descriptor characteristic quantities were drawn from leaf or grain shape and even subtle morphological differences between varieties could be detected after pricipal component analysis of the quantities. In soybean diallel analysis of the quantities revealed chracterictic feature of inheritance for each component. QTL of characteristics relating to rice grain shape was located on the chromosomes using image analysis and the descriptor.

  • Research Products

    (44 results)

All Other

All Publications (44 results)

  • [Publications] 鵜飼保雄 ほか: "DNA多型連鎖地図作成とQTL解析のためのプログラムMAPL" Breeding Science. 45(印刷中). (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鷲谷いずみほか: "Patterns of female fertility in heterostylous Primula sieboldii under severe pollinator limitation" J.Ecology. 82. 571-579 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 山田昌彦ほか: "Genetic analysis of Japanese persimmon fruit weight" J.Amer.Soc.Hort.Sci.119. 1298-1302 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 二宮正士ほか: "Estimation of lodging in paddy fields by texture analysis based on co-occurrence matrices" Trans.ASAE. (印刷中). (1995)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 林武司ほか: "Detection of additive and dominance effects of QTLs in interval mapping of F2 RFLP data" Theor.Appl.Genet.87. 1021-1027 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 山田昌彦ほか: "カキ育種において量的な果実形質の年次変異を減少させるために用いられる対照品種の効率について" 果樹試験場報告. 26. 29-37 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 林武司: "Change in genetic variance under selection in a self-fetilizing population." Genetics. 136. 693-704 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 金沢章: "Restriction fragments homologous to mitochondrial plasmid-like DNAs are located within limited chromosomal regions on the rice nuclear genome." Theoretical and Applied Genetics. 87. 577-586 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鵜飼保雄: "DNAマーカー連鎖地図の作成と利用における統計的解析法" 育種学最近の進歩. 34. 37-45 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 大沢良: "他殖性作物における集団の空間的遺伝構造のシミュレーションによる解析" 育種学最近の進歩. 34. 115-123 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 二宮正士: "Detection of lodging and water stress by texture analysis of image data" Proc.5th Intern.Congr.Agr.5. 841-852 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kiribuchi,C.: "RFLPs analysis of two groups of alfa-amylase multigene families in two-rowed barley(Hordeum vulgare L.)" Jpn.J.Breed.43. 395-403 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 大沢良 ほか: "Effect of spatially restricted pollen flow on spatial genetic structure of an animal-pollinated allogamous plant population" Heredity. 71. 64-73 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 二宮正士 ほか: "Evaluation of fineness of wrinkles on husks of malting barley by texture analysis of digital image data" Euphytica. 64. 113-121 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 二宮正士: "Quantitative evaluation of lodging in paddy rice field by texture analysis of image data" Proc.1st Asian Crop Sci.Conf.1. 309-317 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 岸本直巳 ほか: "Current rice RFLP map corresponding to the classical genetic map" DNA LINK. 2. 1-9 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鵜飼保雄: "連鎖地図作成におけるRFLPデータの処理" 組織培養. 18. 133-137 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鵜飼保雄 ほか: "A microcomputer program package MAPL for automatic construction of RFLP maps of crop plants" DNA LINK. 2. 10-12 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 大澤良ほか: "花粉学事典" 朝倉書店, 454 (1994)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 蓬原雄三: "育種とバイオサイエンス" 養賢堂, 569 (1993)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 藤巻宏 ほか: "植物育種学 上 基礎編,下 応用編" 培風館, 191, 225 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 堀口郁夫 ほか: "農業気象学" 文永堂, 311 (1992)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ohsawa.R.: "Effect of spatially restricted pollen flow on spatial genetic structure of an allogamous plant population." Heredity. 71. 64-73 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ninomiya, S.: "Evaluation of fineness of wrinkles on husks of malting barley by texture analysis of digital image analysis." Euphytica. 64. 113-121 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ninomiya, S.: "Quantitative evaluation of lodging in paddy rice field by texture analysis of image data" Proc.1st Asian Crop Sci.Conf.1. 309-317 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kishimoto, N.: "Current rice RFLP map corresponding to the classical genetic map." DNA LINK. 2. 1-9 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ukai, Y.: "Statistical treatment of RFLP deta in construction of a linkage map." Soshikibaiyo (Tissue culture). 18. 133-137 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ukai, Y.: "A microcomputer program package MAPL for automatic construction of RFLP maps of crop plants." DNA LINK. 2. 10-12 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hayashi, T.: "Change in genetic variance under selection in a self-fertilizing population." Genetics. 136. 693-704 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kanazawa, A.: "Restriction fragment hpomologous to mitochondrial plasmid-like DNAs are located within limited chromosomal regions on the rice nuclear genome." Theor.Appl.Genet.87. 577-596 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ukai, Y.: "Statistical analysis for construction and its use of a DNA marker linkage map." Progress in Plant Breeding. 34. 37-45 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohsawa, R.: "Simulation analysis of spatial genetic sturcture of allogomaous plant populations" Progress in Plant Breeding. 34. 115-123 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ninomiya, S.: "Detection of lodging water stress by texture analysis of image data." Proc.5th Intern.Cong.Agr.5. 841-852 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kiribuchi, C.: "RFLPs analysis of two groups of alfa-amylase multigene families in two-rowed barley (Hordeum vulgare L.)" Jpn.J.Breed.43. 395-403 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ukai, Y.: "A computer program MAPL for construction of DNA polymorphism linkage map and QTL analysis" Breeding Journal. 45 in press. (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Washitani, I.: "Patterns of female fertility in heterostylous Primula sieboldii under severe pollinator limitation." J.Ecology. 82. 571-579 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamada, M.: "Genetic analysis of Japanese persimmon fruit weight." J.Amer.Soc.Hort.Sci.119. 1298-1302 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ninomiya, S.: "Estimation of lodging in paddy field by texture anaysis based on co-occurence matrices." Trans, ASAE. in press. (1995)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hayashi, T.: "Detection of additive and dominance effects of QTLs in interval mapping of F2 RFLP data" Theor.Appl.Genet.87. 1021-1027 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yamada, M.: "Efficiency of use of control genotypes for reducing yearly fluctuations of quantitative fruit characters in Japanese persimmon breedding" Bull.Fruit Research Station, MAFF. 26. 29-37 (1994)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Fujimaki, H.: "Plant Breeding" Vol.I,II. Baihukan, 191,225 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Horiguchi, I.: "Agricultural Meteorology". Buneido, 311 (1992)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Futsuhara, Y.: "Breeding and Bioscience". Yokendo, 569 (1993)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ohsawa, R.: "Glossary of Pollens". Asakura Book Comp., 454 (1994)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 1996-04-15  

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