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2000 Fiscal Year Final Research Report Summary

Mechanism of Selective Degradation of Proteins

Research Project

Project/Area Number 08278102
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Research InstitutionTokyo Metropolitan Institute of Gerontology (2000)
The University of Tokyo (1996-1999)

Principal Investigator

SUZUKI Koichi  Tokyo Metropolitan Institute of Gerontology, Director, 所長 (80011948)

Co-Investigator(Kenkyū-buntansha) MURAKAMI Yasuko  Jikei University School of Medicine, Professor, 医学部, 教授 (30056709)
YAMAO Fumiaki  National Institute of Genetics, Associate Professo, 助教授 (10158074)
TANAKA Keiji  Tokyo Metropolitan Institute of Medical Science, Laboratory Chief, 部長(研究職) (10108871)
MAKI Masatoshi  Graduate School of Bioagricultural Sciences, Nagoya University, Professor, 大学院・生命農学研究科, 教授 (40183610)
KIDO Hiroshi  Institute for Enzyme Research, University of Tokushima, Professor, 分子酵素学研究センター, 教授 (50144978)
Project Period (FY) 1996 – 1999
KeywordsProteolysis / Protein Degradation / Proteases / Proteasome / Calpain / Ornithine Decarboxylase
Research Abstract

To analyze mechanisms for selective intracellular protein degradation, two major protease systems in cells, proteasome and calpain, were mainly studied. Suzuki succeeded to analyze the crystal structure of calpain at 2.3Å and found that calpain exists as an inactive proenzyme which requires Ca-induced large conformational changes to become active. Domain III of unknown function is responsible for the Ca-induced conformational changes and translocation to biological membrane. Maki identified 4 novel calpastatin species produced by alternative splicing. Tanaka identified 5 alternative splicing variants of poly-ubiquitin receptor of 26S proteasome differently expressed in various tissues and thus showed distinct functions. A novel proteasome species responsible for endogenous antigen processing containing catalytic and regulatory subunits distinct from 26S proteasome was discovered and named immune proteasome. Further, the gene product for Parkinsonism was identified to be ubiquitin ligase suggesting that the deposition of its target protein of the ligase would be the cause of the disease. Yamao identified a novel proteolytic system of fission yeast for degradation of M phase cyclin containing novel E2. Murakami clarified the molecular mechanism for binding and degradation of ornithine decarboxylase by proteasome and the function of antizyme and ATP in the process. Kido analyzed molecular basis for influenza virus infection to host cells that requires specific degradation of virus membrane proteins by host cell tryptase clara. A specific inhibitor protein for clara tryptase was also fund.

  • Research Products

    (39 results)

All Other

All Publications (39 results)

  • [Publications] Ono, Y., et al.: "Functional defects of a muscle-specific calpain, p94, caused by mutations associated with limb-girdle muscular dystrophy type 2A."J.Biol.Chem.. 273. 17073-17078 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Strobl, S., et al.: "The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium."Proc.Natl.Acad.Sci.USA. 97. 588-592 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tagawa, K., et al.: "Myopathy phenotype of transgenic mice expressing active site-mutated inactive p94 skeletal muscle-specific calpain, the gene product responsible for limb girdle muscular dystrophy type 2A."Human Molecular Genetics. 9. 1392-1402 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kim, K. I., et al: "A new SUMO-1-specific protease, SUSP1, that is highly expressed in reproductive organs."J.Biol.Chem.. 275. 14102-14106 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Shimura, H., et al: "Familial Parkinson's disease gene product, Parkin, is a ubiquitin-protein ligase."Nature Genetics. 25. 302-305 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kawahara, H., et al: "Developmentally regulated, alternative splicing of the Rpn10 gene generates multiple forms of 26S proteasomes."EMBO J.. 19. 4144-4153 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nakajima, T., et al: "Introduction of Ubiquitin-Conjuguting Enzyme Activity for Degradation of Topoisomerase II α during Adenovirus EIA Induced Apoptosis."Biophys.Biochem.Res.Commun.. 239. 823-829 (1997)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kishi, T., et al.: "Grrl functions in the-ubiquitin pathway in Sacchromyces cerevisiae through association with Skp1."Mole.Gen.Genet.. 257. 143-148 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kishi, T., et al.: "An essential function of Grrl for the degradation of Cln2 is to act as a binding core that links Cln2 to Skp1."J.Cell Sci.. 111. 3655-3661 (1998)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Murakami, Y., et al.: "ATP-dependent inactivation and sequestration of ornithine decarboxylase by the 26S proteasome are prerequisites for degradation."Mol.Cell.Biol.. 19. 7216-7227 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tanahasi, N., et al.: "Hybrid proteasomes : Induction by interferon-g and contribution to ATP-dependent proteolysis."J.Biol.Chem.. 275. 14336-14345 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ivanov, I. P., et al.: "Conservation of polyamine regulation by translational frameshifting from yeast to mammals."EMBO J.. 19. 1907-1917 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Yano, M., et al.: "Intrinsic nucleotide diphosphate kinase-like activity is a novel function of the 20S proteasome."J.Biolo.Chem.. 274. 34375-34382 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tani, K., et al.: "Chymase is a potent chemoattractant for human monocytes and neutrophils."J.Leuko.Biol.. 67. 585-589 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Chen. Y., et al.: "Tyrptase from pig lungs triggers infection by pneumotropic viruses."Eur.J.Biochem.. 267. 3189-3197 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Takano, J., et al.: "Structure of mouse calpastatin isoforms : implications of species-common and species-specific alternative splicing."Biochem.Biophys.Res.Commun.. 260. 339-345 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Kitaura, Y., et al.: "Peflin, a novel member of the five-EF-hand-protein family, is similar to the apoptosis-linked gene 2 (ALG-2) protein but possesses nonapeptide repeats in the N-terminal hydrophobic region."Biochem.Biophys.Res.Commun.. 263. 68-75 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Hiwasa, T., et al.: "Increase in ultraviolet sensitivity by overexression of calpastatin in ultraviolet-resistant UVr-1 cells derived from ultraviolet-sensitive human RSa cells."Cell Death Diff.. (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鈴木紘一: "プロテオリシスー蛋白質分解の分子機構とバイオロジー"共立出版株式会社. 355 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 鈴木紘一: "タンパク質分解-分子機構と細胞機能-"シュプリンガー・フェアラーク東京株式会社. 236 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Koichi Suzuki: "INTRACELLULAR PROTEIN CATABOLISM"Plenum Press. 306 (1996)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Ono, Y., et al.: "Functional defects of a muscle-specific calpain, p94, caused by mutations associated with limb-girdle muscular dystrophy type 2A."J.Biol.Chem.. 273. 17073-17078 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Strobl, S., et al.: "The crystal structure of calcium-free human m-calpain suggests an electrostatic switch mechanism for activation by calcium."Proc.Natl.Acad.Sci., USA. 97. 588-592 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tagawa, K., et al.: "Myopathy phenotype of transgenic mice expressing active site-mutated inactive p94 skeletal muscle-specific calpain, the gene product responsible for limb girdle muscular dystrophy type 2A."Human Molecular Genetics. 9. 1392-1402 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kim, K.I., et al.: "A new SUMO-1-specific protease, SUSP1, that is highly expressed in reproductive organs."J.Biol.Chem.. 275. 14102-14106 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Shimura, H., et al.: "Familial Parkinson's disease gene product, Parkin, is a ubiquitin-protein ligase."Nature Genetics. 25. 302-305 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kawahara, H., et al.: "Developmentally regulated, alternative splicing of the Rpn10 gene generates multiple forms of 26S proteasomes."EMBO J.. 19. 4144-4153 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nakajima, T., et al.: "Introduction of Ubiquitin-Conjuguting Enzyme Activity for Degradation of Topoisomerase II α during Adenovirus EIA Induced Apoptosis."Biophys.Biochem.Res.Commun.. 239. 823-829 (1997)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kishi, T., et al.: "Grr1 functions in the ubiquitin pathway in Sacchromyces cerevisiae through association with Skp1."Mole.Gen.Genet.. 257. 143-148 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kishi, T., et al.: "An essential function of Grr1 for the degradation of Cln2 is to act as a binding core that links Cln2 to Skp1."J.Cell Sci.. 111. 3655-3661 (1998)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Murakami, Y., et al.: "ATP-dependent inactivation and sequestration of ornithine decarboxylase by the 26S proteasome are prerequisites for degradation."Mol.Cell.Biol.. 19. 7216-7227 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tanahasi, N., et al.: "Hydrid proteasomes : Induction by interferon-g and contribution to ATP-dependent proteolysis."J.Biol.Chem.. 275. 14336-14345 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Ivanov, I.P., et al.: "Conservation of polyamine regulation by translational frameshifting from yeast to mammals."EMBO J.. 19. 1907-1917 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Yano, M., et al.: "Intrinsic nucleotide diphosphate kinase-like activity is a novel function of the 20S proteasome."J.Biolo.Chem.. 274. 34375-34382 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Tani, K., et al.: "Chymase is a potent chemoattractant for human monocytes and neutrophils."J.Leuko.Biol.. 67. 585-589 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Chen, Y., et al.: "Tyrptase from pig lungs triggers infection by pneumotropic viruses."Eur.J.Biochem.. 267. 3189-3197 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Takano, J., et al.: "Structure of mouse calpastatin isoforms : implications of species-common and species-specific alternative splicing."Biochem.Biophys.Res.Commun.. 260. 339-345 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Kitaura, Y., et al.: "Peflin, a novel member of the five-EF-hand-protein family, is similar to the apoptosis-linked gene 2 (ALG-2) protein but possesses nonapeptide repeats in the N-terminal hydrophobic region."Biochem.Biophys.Res.Commun.. 263. 68-75 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Hiwasa, T., et al.: "Increase in ultraviolet sensitivity by overexression of calpastatin in ultraviolet-resistant UVr-1 cells derived from ultraviolet-sensitive human RSa cells."Cell Death Diff.. (2000)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2002-03-26  

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