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2001 Fiscal Year Final Research Report Summary

Construction of novel metabolic pathway by DNA shuffling of aromatic dioxygenase genes

Research Project

Project/Area Number 11460048
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionKYUSHU UNIVERSITY

Principal Investigator

FURUKAWA Kensuke  Faculty of Agriculture, Kyushu University, Prof., 農学研究院, 教授 (90221556)

Co-Investigator(Kenkyū-buntansha) GOTO Masatoshi  Faculty of Agriculture, Kyushu University, Assistant Prof., 農学研究院, 助手 (90274521)
YOSHINO Sadazo  Faculty of Agriculture, Kyushu University, Associated Prof., 農学研究院, 助教授 (80117291)
Project Period (FY) 1999 – 2001
Keywordsoxygenase / hybrid enzyme / DNA shuffling / substrate specificity / degradative genes / alkyl benzene / molecular evolutionary engineering
Research Abstract

Oxygenases are involved in the direct introduction of molecular oxygen into the substrates, which consisted with terminal dioxygenase (comprised with a large and a small subunits) and electron transfer system from NADH. We first revealed that the large subunit is crucially involved in the substrate specificity of oxygenase. Then we performed DNA shuffling between the two large subunits of biphenyl dioxygenases derived from Pseudomonas pseudoalcaligenes KF707 and Burkhorderia cepacia LB400. The evolved bphA1 genes were expressed in Escherichia coli along with other bph genes. Some evolved biphenyl dioxygenases exhibited enhanced transformation abilities for various polychlorinated biphenyls by introducing molecular oxygen at the 2,3- and/or 3,4 positions depending on PCB congeners. Some other evolved enzymes acquired new and novel degradation capacities for benzene, toluene and some alkylbenzenes. The mutation using random hexanucleotide oligomers allow us to get another interesting mutant oxygenase which can degrade dibenzofuran and dibenzo-p-dioxin by both lateral dioxygenation and angular dioxygenation.
The amino acid sequences of above mutant dioxygenases were determined and the relationships between structure and function were discussed.

  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Tsuda, M., Tan.H-M, Nishi, A., Furukawa, K.: "Mobile vatablic genes in bacteria"J. Biosci. Bioeng.. 87(4). 401-410 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suenaga, H., Nishi, A., Watanabe, T., Sakai, M., Furukawa K.: "Engineering a hybrid pseudomonad aquired 3,4-dioxygenase activity for polychlorinated biphenyls"J. Biosci. Bioeng.. 87. 430-435 (1999)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Nishi, A., Tominaga, K., Furukawa, K.: "A 90-kilobase conjutgative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715"J. Bacteriol.. 182. 1949-1955 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Furukawa, K.: "Engineering dioxygenases fro efficient degradation of environmental pollutants"Curr. Topics Biotechnol. 11. 244-249 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Furukawa, K.: "Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCB)"J. Gent Appl. Microbiol.. 46. 283-296 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Watanabe, T., Inoue, R., Kimuna, N., Furukawa, K.: "Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcalinese KF707"J. Biol. Chem.. 275(40). 31016-31023 (2000)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suenaga, H., Goto, M., Furukawa, K.: "Emergence of multifunctional oxygenase activities of biphenyl dioxygenase by random-priming recombination"J. Biol. Chem.. 276(25). 22500-22506 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Maeda, T., Takahashi, Y., Suenaga, H., Suyama, A., Goto, M., Furukawa, K.: "Functional analyses of Bph-Tod hybrid dioxygenase which exhibits high degradation -activity toward trichloroethylene"J. Biol. Chem.. 276(32). 29833-29838 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Suenaga, H., Mitsuoka, M., Ura, Y., Watanabe, T., Furukawa, K.: "Directed evolution of biphenyl dioxygenase : emergence of enhanced degradation capacity for benzene, toluene and alkylbenzen"J. Bacteriol. 183(18). 5441-5444 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Lee, T., Tokunaga, T., Furukawa, K.: "Efficient dechlorination of tetrachloroethylene in soil slurry by combined use of an anaerobic Desulfitobacterium sp. strain Y51 and iron powder"J. Biosci. Bioeng.. 92(5). 453-458 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 古川謙介: "有害化学物質を分解するスーパー微生物の開発"化学工業. 53(2). 17-22 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Furukawa, K., Suenaga, H., Nishi, A., Watanabe, T., Goto, M.: "Engineering biphenyl dioxygenases to acquire wide degradation capabilities of polychlorinated biphenyls (PCB) and aromatic hydrocarbons"World Scientific Publishing Co. Pte. Ltd.. 18 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 西 哲人, 古川謙介: "IGEシリーズ29 遺伝情報のダイナミズムとその分子機構 ビフェニル/サリチル酸代謝遺伝子群をコードする自己可動化因子bph-salエレメント"東北大学遺伝生態研究センター出版. 12 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] 金原和秀, 古川謙介: "バイオレメディエーション実用化への手引き"リアライズ社. 10 (2001)

    • Description
      「研究成果報告書概要(和文)」より
  • [Publications] Tsuda, M., Tan, H-M, Nishi,A., and Furukawa,K.: "Mobile vatablic genes in bacteria"J. Biosci. Bioeng.. 87 (4). 401-410 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suenaga, H., Nishi, A., Watanabe, T., Sakai, M. and Furukawa, K.: "Engineering a hybrid pseudomonad aquired 3,4-dioxygenase activity for polychlorinated biphenyls"J. Biosci. Bioeng.. 87. 430-435 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa, K., Hirose, J., Kimura, N. and Suyama, A.: "Engineering hybrid strains for the efficient degradation of chloroethenes"Proceedings of International Conference on Asian Network on Microbial Resear. 322-335 (1999)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Nishi, A., Tominaga, K., and Furukawa, K.: "A 90-kilobase conjugative chromosomal element coding for biphenyl and salicylate catabolism in Pseudomonas putida KF715"J. Bacteriol.. 182. 1949-1955 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa, K.: "Engineering dioxygenases for efficient degradation of environmental pollutants"Curr. Topics Biotechnol.. 11. 244-249 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa, K.: "Biochemical and genetic bases of microbial degradation of polychlorinated biphenyls (PCB). Invited review"J. Gen. Appl. Microbiol.. 46. 283-296 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Watanabe, T., Inoue, R., Kimura, N. and Furukawa, K.: "Versatile transcription of biphenyl catabolic bph operon in Pseudomonas pseudoalcalinese KF707"J. Biol. Chem.. 275(40). 31016-31023 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suenaga, H., Goto, M. and Furukawa, K.: "Emergence of multifunctional oxygenase activities of biphenyl dioxygenase by random-priming recombination"J. Biol. Chem.. 276(25). 22500-22506 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Maeda, T., Takahashi, Y., Suenaga, H., Suyama, A., Goto, M. and Furukawa, K.: "Functional analyses of Bph-Tod hybrid diozygenase which exhibits high degradation activity toward trichloroethylene"J. Biol. Chem.. 276(32). 29833-29838 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Suenaga, H., Mitsuoka, M., Ura, Y., Watanabe, T and Furukawa, K.: "Directed evolution of biphenyl dioxygenase : emergence of enhanced degradation capacity for benzene, toluene and alkylbenzene"J. Bacteriol.. 183(18). 5441-5444 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Lee, T., Tokunaga, T. and Furukawa, K.: "Efficient dechlorination of tetrachloroethylene in soil slurry by combined use of an anaerobic Desulfitobacterium sp. strain Y51 and iron powder"J. Biosci. Bioeng.. 92(5). 453-458 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Publications] Furukawa, K., Suenaga, H., Nishi, A., Watanabe, T. and Goto, M.: "Engineering biphenyl dioxygenases to acquire wide degradation capabilities of polychlorinated biphenyls (PCB) and aromatic hydrocarbons"World Scientific Publishing Co. Ltd.. 159-176 (2001)

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2003-09-17  

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