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2005 Fiscal Year Final Research Report Summary

Protemics-based molecular plant breeding

Research Project

Project/Area Number 13GS0023
Research Category

Grant-in-Aid for Creative Scientific Research

Allocation TypeSingle-year Grants
Research InstitutionNara Institute of Science and Technology

Principal Investigator

SHIMAMOTO Ko  Nara Institute of Science and Technology, Graduate School of Biological Sciences, Professor (10263427)

Co-Investigator(Kenkyū-buntansha) TAKAYAMA Seiji  NARA INSTITUTE of SCIENCE and TECHNOLOGY, Graduate School of Biological Sciences, Professor (70273836)
KOIZUMI Nozomu  NARA INSTITUTE of SCIENCE and TECHNOLOGY, Graduate School of Biological Sciences, Associate Professor (20252835)
AKASHI Kinya  NARA INSTITUTE of SCIENCE and TECHNOLOGY, Graduate School of Biological Sciences, Assistant Professor (20314544)
MORIKAWA Hiromichi  Hiroshima University, Graduate School of Science, Professor (00089129)
HIRANO Hisashi  Yokohama City University, Kihara Institute for Biological Research, Professor (00275075)
Project Period (FY) 2001 – 2005
Keywordsinnate immunity / Protein complex / Proteomics / Mass spectrometry / Protein-Protein interaction
Research Abstract

In this program, we developed new techniques to comprehensively analyze proteins involved in various stress responses in plants, which include optimizations for extraction of proteins from plant tissues, two-dimensional gel electrophoresis, and mass spectrometry for protein identification. We also developed new methods to analyze protein modification and protein-protein interaction. By using these techniques, many important factors that regulate various stress responses were identified. The experiments for interactions between these factors revealed the protein signaling networks, which control effective plant responses to stresses. Especially, we identified many components of a large innate immune complex containing OsRacl GTPase that functions as a key regulator to induce immune responses in rice. Comprehensive experiments of OsRacl complex indicate essential roles of OsRacl in recognition of pathogen invasion and induction of a series of innate immune responses. In another project, novel factors regulating resistance to drought and strong light were found by proteomics approach using wild watermelon. Thus, the program provided important tools and information to produce new type of stress tolerant plants that will be required to keep or increase crop yields in the future.

  • Research Products

    (52 results)

All 2006 2005 2004 2003 2002 2001

All Journal Article (52 results)

  • [Journal Article] Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells.2006

    • Author(s)
      Fujiwara M, UmemuraK, Kawasaki T, ShimamotoK.
    • Journal Title

      Plant Physiol 140

      Pages: 734-745

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Cinnamoyl-CoA reductase,a key enzyme in lignin biosynthesis,is an effector of small GTPase Rac in defense signaling in rice.2006

    • Author(s)
      Kawasaki T, Koita H, Nakatsubo T, Hasegawa K, Wakabayashi K, Takahashi H, Umemura K, Umezawa T, Shimamoto K.
    • Journal Title

      Proc Natl Acad Sci USA 103

      Pages: 230-235

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Arabidopsis CDKA;1,a cdc2 homologue,controls proliferation of generative cells in male gametogenesis.2006

    • Author(s)
      Iwakawa H, Shinmyo A, and Sekine M.
    • Journal Title

      Plant J. 45

      Pages: 819-831

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Arabidopsis KRPs have distinct inhibitory activity toward cyclin D2-associated kinases, including plant-specific B-type cyclin-dependent kinase.2006

    • Author(s)
      Nakai T, Kato K, Shinmyo A and Sekine M.
    • Journal Title

      FEBS Lett. 580

      Pages: 336-340

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Proteomics of Rae GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells.2006

    • Author(s)
      Fujiwara M, Umemura K, Kawasaki T, Shimamoto K.
    • Journal Title

      Plant Physiol. 140

      Pages: 734-745

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rae in defense signaling in rice.2006

    • Author(s)
      Kawasaki T, Koita H, Nakatsubo T, Hasegawa K, Wakabayashi K, Takahashi H, Umemura K, Umezawa T, Shimamoto K.
    • Journal Title

      Proc NatlAcad Sci U SA. 103

      Pages: 230-235

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Arabidopsis CDKA ; 1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis.2006

    • Author(s)
      Iwakawa H, Shinmyo A, Sekine M.
    • Journal Title

      Plant J. 45

      Pages: 819-831

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Arabidopsis KRPs have distinct inhibitory activity toward cyclin D2-associated kinases, including plant-specific B-type cyclin-dependent kinase.2006

    • Author(s)
      Nakai T, Kato K, Shinmyo A, Sekine M.
    • Journal Title

      FEBS Lett. 580

      Pages: 336-340

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRacl and heterotrimeric G-protein in rice 1[w].2005

    • Author(s)
      Lieberherr D, Thao NP, Nakashima A, Umemura K, Kawasaki T, Shimamoto K.
    • Journal Title

      Plant Physiol. 138

      Pages: 1644-1652

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Proteome analysis of programmed cell death and defense signaling using the rice lesion mimic mutant cdr2.2005

    • Author(s)
      Tsunezuka H, Fujiwara M, Kawasaki T, Shimamoto K.
    • Journal Title

      Mol Plant Microbe Interact. 18

      Pages: 52-59

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Purification and characterization of glutamate N-acetyltransferase involved in citrulline accumulation in wild watermelon.2005

    • Author(s)
      Takahara K, Akashi K and Yokota A.
    • Journal Title

      FEBS J. 272

      Pages: 5353-5364

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Co-expression of cytochrome b561 and ascorbate oxidase in leaves of wild watermelon under drought and high light conditions.2005

    • Author(s)
      Nanasato Y, Akashi K, Yokota A.
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 1515-1524

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The role of glycosylation in the function of a 48-kDa glycoprotein from carrot.2005

    • Author(s)
      Shang C, Sassa H and Hirano H.
    • Journal Title

      Biochem.Biophys.Res.Commun. 328

      Pages: 144-149

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] sphingolipid elicitor-inducible mitogen-activated protein kinase is regulated by the small GTPase OsRaci and heterotrimeric G-protein in rice i[w].2005

    • Author(s)
      Lieberherr D, Thao NE Nakashima A, Umemura K, Kawasaki T, Shimamoto K. A
    • Journal Title

      Plant Physiol. 138

      Pages: 1644-1652

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Proteome analysis of programmed cell death and defense signaling using the rice lesion mimic mutant cdr2.2005

    • Author(s)
      Tsunezuka H, Fujiwara M, Kawasaki T, Shimamoto K.
    • Journal Title

      Mol Plant Microbe Interact 18

      Pages: 52-59

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Co-expression of cytochrome b56i and ascorbate oxidase in leaves of wild watermelon under drought and high light conditions.2005

    • Author(s)
      Nanasato Y, Akashi K, Yokota A.
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 1515-1524

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The role of glycosylation in the function of a 48-kDa glycoprotein from carrot.2005

    • Author(s)
      Shang C, Sassa H, Hirano H.
    • Journal Title

      Biochem. Biophys. Res. Commun. 328

      Pages: 144-149

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRacl in rice.2004

    • Author(s)
      Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K.
    • Journal Title

      Plant Physiol 135

      Pages: 1447-1456

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Potent hydroxyl radical-scavenging activity of drought-induced type-2 metallothionein in wild watermelon.2004

    • Author(s)
      Akashi K, Nishimura N, Ishida Y, Yokota A.
    • Journal Title

      Biochem.Biophys.Res.Commun. 323

      Pages: 72-78

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Interaction of a 43-kDa receptor-like protein with a 4-kDa hormone-like peptide in soybean.2004

    • Author(s)
      Hanada K and Hirano H.
    • Journal Title

      Biochemistry 43

      Pages: 12105-12112

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Protein extraction from mature rice leaves for two-dimensional gelelectrophoresis and its application in proteome analysis.2004

    • Author(s)
      Islam N, Lonsdale M, Upadhyaya N.M, Higgins T.J, Hirano H and Akhurst R.
    • Journal Title

      Proteomics 4

      Pages: 1903-1908

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Mass spectrometric analysis of posttranslational modifications of acarrot extracellular glycoprotein.2004

    • Author(s)
      Shang C, Shibahara T, Hanada K, Iwafune Y and Hirano H.
    • Journal Title

      Biochemistry 43

      Pages: 6281-6292

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Mass spectrometric analysis of expression of ATPase subunits encoded by duplicated genes in the 19S regulatory particle of rice 26S proteasome.2004

    • Author(s)
      Shibahara T, Kawasaki H and Hirano H.
    • Journal Title

      Arch.Biochem.Biophys. 421

      Pages: 34-41

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRacl in rice.2004

    • Author(s)
      Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K.
    • Journal Title

      Plant Physiol. 135

      Pages: 1447-1456

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Potent hydroxyl radical-scavenging activity of drought-induced type-2 metallothionein in wild watermelon.2004

    • Author(s)
      Akashi K, Nishimura N, Ishida Y, Yokota A.
    • Journal Title

      Biochem. Biophys. Res. Commun. 323

      Pages: 72-78

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] interaction of a 43-kDa receptorlike protein with a 4-kDa hormone-like peptide in soybean.2004

    • Author(s)
      Hanada K, Hirano H.
    • Journal Title

      Biochemistry 43

      Pages: 12105-12112

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Protein extraction from mature rice leaves for two-dimensional gel electrophoresis and its application in proteome analysis.2004

    • Author(s)
      islam N, Lonsdale M, Upadhyaya N. M, Higgins T. J, Hirano H, Akhurst R.
    • Journal Title

      Proteomics 4

      Pages: 1903-1908

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Mass spectrometric analysis of posttranslational modifications of a carrot extracellular glycoprotein.2004

    • Author(s)
      Shang C, Shibahara T, Hanada K, Iwafune Y, Hirano H.
    • Journal Title

      Biochemistry 43

      Pages: 6281-6292

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Mass spectrometric analysis of expression of ATPase subunits encoded by duplicated genes in the i9S regulatory particle of rice 26S proteasome.2004

    • Author(s)
      Shibahara T, Kawasaki H, Hirano H.
    • Journal Title

      Arch. Biochem. Biophys. 421

      Pages: 34-41

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Plant-specific microtubule-associated protein SPIRAL2 is required for anisotropic growth in Arabidopsis.2004

    • Author(s)
      Shoji T, Narita N.N, Hayashi K, Asada 3', Hamada T, Sonobe S, Nakajima K, Hashimoto T.
    • Journal Title

      Plant Physiol. 136

      Pages: 3933-3944

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Interaction of Arabidopsis membrane proteins with SPIRAL 1.2004

    • Author(s)
      Prieto R, Hashimoto T.
    • Journal Title

      Plant Biotechnol. 21

      Pages: 261-267

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Hyperphosphorylation of a mitochondrial protein,prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdrl.2003

    • Author(s)
      Takahashi A, Kawasaki T, Wong HL, Suharsono U, Hirano H, Shimamoto K.
    • Journal Title

      Plant Physiol. 132

      Pages: 1861-1869

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Assessing matrix-assisted laser desorption/ionization time-of-flight mass spectrometry as a means of rapidembryo protein identification in rice.2003

    • Author(s)
      Fukuda M, Islam N, Woo S.-H., Yamagishi A, Takaoka M and Hirano H.
    • Journal Title

      Electrophoresis 24

      Pages: 1319-1329

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Amino acid residues on the surface of soybean4-kDa peptide involved in the interaction with its binding protein.2003

    • Author(s)
      Hanada K, Nishiuchi Y and Hirano H.
    • Journal Title

      Eur.J.Biochem. 270

      Pages: 2583-2592

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Hyperphosphorylation of a mitochondrial protein, prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdri.2003

    • Author(s)
      Takahashi A, Kawasaki T, Wong HL, Suharsono U, Hirano H, Shimamoto K.
    • Journal Title

      Plant Physiol. 132

      Pages: 1861-1869

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Assessing matrix-assisted laser desorption/ionization time-of-flight mass spectrometry as a means of rapid embryo protein identification in rice.2003

    • Author(s)
      Fukuda M, Islam N, Woo S.-H., Yamagishi A, Takaoka M, Hirano H.
    • Journal Title

      Electrophoresis 24

      Pages: 1319-1329

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Amino acid residues on the surface of soybean 4-kDa peptide involved in the interaction with its binding protein.2003

    • Author(s)
      Hanada K, Nishiuchi Y, Hirano H.
    • Journal Title

      Eur. J. Biochem. 270

      Pages: 2583-2593

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Characterization of low molecular weight starch granule associated protein in common wheat by proteomic approaches.2003

    • Author(s)
      Islam N, Takaoka M, Sassa H, Kawasaki H, Hirano H
    • Journal Title

      J. Electrophoresis 47

      Pages: 43-49

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Wheat proteomics : Relationship between fine chromosome deletion and protein expression.2003

    • Author(s)
      Islam N, Tsujimoto H, Hirano H.
    • Journal Title

      Proteomics 3

      Pages: 307-316

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Proteome analysis of diploid, teteraploid and hexaploid wheat : towards understanding genome interactions in protein expression2003

    • Author(s)
      Islam N, Tujimoto H, Hirano H.
    • Journal Title

      Proteomics 3

      Pages: 549-557

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes.2003

    • Author(s)
      Yamazaki T, Takaoka M, Katoh E, Hanada K, Sakita M Sakata K, Nishiuchi Y, Hirano H.
    • Journal Title

      Eur. J. Biochem. 270

      Pages: 1269-1276

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rac in disease resistance of rice.2002

    • Author(s)
      Suharsono U, Fujisawa Y, Kawasaki T, Iwasaki Y, Satoh H, Shimamoto K.
    • Journal Title

      Proc Natl Acad Sci USA 99

      Pages: 13307-13312

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Rice as a model for comparative genomics of plants.2002

    • Author(s)
      Shimamoto K, Kyozuka J.
    • Journal Title

      Annu Rev Plant Biol 53

      Pages: 399-419

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Citrulline and DRIP-1 protein(ArgE homologue)in drought tolerance of wild watermelon.2002

    • Author(s)
      Yokota A, Kawasaki S, Iwano M, Nakamura C, Miyake C, Akashi K.
    • Journal Title

      Anal.Bot. 89

      Pages: 1-8

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The heterotrimeric G protein alpha subunit acts upstream of the small GTPase Rae in disease resistance of rice.2002

    • Author(s)
      Suharsono U, Fujisawa Y, Kawasaki T, Iwasaki Y, Satoh H, Shimamoto K.
    • Journal Title

      Proc NatlAcad Sci USA. 99

      Pages: 13307-13312

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Rice as a model for comparative geaomics of plants.2002

    • Author(s)
      Shimamoto K, Kyozuka J.
    • Journal Title

      Annu Rev Plant Biol. 53

      Pages: 399-419

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Citrulline and DRIP-i protein (ArgE homologue) in drought tolerance of wild watermelon.2002

    • Author(s)
      Yokota A, Kawasaki S, Iwano M, Nakamura C, Miyake C, Akashi K.
    • Journal Title

      Anal. Bot. 89

      Pages: 1-8

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Proteome approach as an efficient means to identify seed proteins and their fine gene location in wheat(Triticum aestiv-um L.).2002

    • Author(s)
      Islam N, Woo, S.-H., Tsujimoto H, Kawasaki H, Hirano H.
    • Journal Title

      Proteomics 2

      Pages: 1146-1155

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Identification of the i9S regulatory particle subunits from the rice 26S proteasome.2002

    • Author(s)
      Shibahara T, Kawasaki H, Hirano H.
    • Journal Title

      Eur. J. Biochem. 269

      Pages: 1474-1483

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Efficient peptide mapping and its application to identify embryo proteins in the rice proteome analysis.2002

    • Author(s)
      Woo, S.-H., Fukuda M, Islam N, Takaoka M, Kawasaki H, Hirano H.
    • Journal Title

      Electrophoresis 23

      Pages: 647-654

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Essential role of the small GTPase Rac in disease resistance of rice.2001

    • Author(s)
      Ono E, Wong HL, Kawasaki T, Hasegawa M, Kodama O, Shimamoto K.
    • Journal Title

      Proc Natl Acad Sci USA 98

      Pages: 759-764

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Essential role of the small GTPase Rae in disease resistance of rice.2001

    • Author(s)
      Ono E, Wong HL, Kawasaki T, Hasegawa M, Kodama 0, Shimamoto K.
    • Journal Title

      Proc NatlAcad Sci USA. 98

      Pages: 759-764

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2010-02-04  

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