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2004 Fiscal Year Final Research Report Summary

A Study on the Information Security System for Personal Genome Information based on DNA Computing

Research Project

Project/Area Number 14380152
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Intelligent informatics
Research InstitutionHOKKAIDO UNIVERSITY

Principal Investigator

OHUCHI Azuma  Hokkaido Univ., Grad.School of Information Science and Technology, Prof., 大学院・情報科学研究科, 教授 (50002308)

Co-Investigator(Kenkyū-buntansha) YAMAMOTO Masahito  Hokkaido Univ., Grad.School of Information Science and Technology, Assoc.Prof., 大学院・情報科学研究科, 助教授 (40292057)
KAWAMURA Hidenori  Hokkaido Univ., Grad.School of Information Science and Technology, Lec., 大学院・情報科学研究科, 助手 (60322830)
Project Period (FY) 2002 – 2004
KeywordsDNA Computing / Personal Genome Information / Dummy DNA / PCR / Key Primer / Security
Research Abstract

In this research project, we proposed the new information security system at the molecular level for personal genome data. Important data such as Personal genome data can be stored as a DNA sequences, and can be readout when it is needed. In the proposed system, however, it is impossible or so hard to readout without the keys, because some kind of dummy DNA data are included in the pool with the stored data. We proposed two kind of security system.
(1)Data lock by DNA modification
Data is stored into DNA with some modifications, which can be removed only by the key primer. We demonstrated that the target data can be readout only if we can use the key primer by some chemical experiments.
(2)Data lock by the hierarchical DNA memory based the nested PCR
Data is stored with some DNA blocks, which are regarded as addresses of memory. In order to readout the data from the pool of these DNA memories including some dummy DNA, nested PCR with some key DNA are used. We verified that the target data can be extracted and readout from 27 kinds of DNA memories by some chemical experiments. Furthermore, we demonstrated that the target data can be extracted from 65,536 kinds of the pool of DNA memories.

  • Research Products

    (51 results)

All 2005 2004 2003 2002

All Journal Article (49 results) Book (2 results)

  • [Journal Article] Design of nucleic acid sequences for DNA computing based on a thermodynamic approach2005

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Nucleic Acids Research (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Hairpin-Based State Machine and Conformational Addressing : Design and Experiment2005

    • Author(s)
      Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi
    • Journal Title

      Natural Computing (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Potential for Enlarging DNA Memory : Validity of Experimental Operations of Scaled-up Nested Primer Molecular Memory2005

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      BioSystems, Journal of Biological and Information Processing Science (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Development, Evaluation and Benchmarking of Simulation Software for Biomolecule-based Computing2005

    • Author(s)
      Derrel Blain, Max Garzon, Soo-Yong Shin, Byong-Tak Zhang, Satoshi Kashiwamura, Masahito Yamamoto, Atsuhi Kameda, Azuma Ohuchi
    • Journal Title

      Natural Computing (印刷中)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Design of nucleic acid sequences for DNA computing based on a thermodynamic approach2005

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Nucleic Acids Research (to appear)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Hairpin-based State Machine and Conformational Addressing Design and Experiment2005

    • Author(s)
      Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi
    • Journal Title

      Natural Computing (to appear)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Potential for Enlarging DNA Memory : Validity of Experimental Operations of Scaled-up Nested Primer Molecular Memory2005

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      BioSystems, Journal of Biological and Information Processing Science (to appear)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Development, Evaluation and Benchmarking of Simulation Software for Biomolecule-based Computing2005

    • Author(s)
      Derrel Blain, Max Garzon, Soo-Yong Shin, Byoung-Tak Zhang, Satoshi Kashiwamura, Masahito Yamamoto, Atsuhi Kameda, Azuma Ohuchi
    • Journal Title

      Natural Computing (to appear)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Two-Step Search for DNA Sequence Design2004

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      IEICE E87-A

      Pages: 1446-1553

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Aqueous Computing with DNA Hairpin-based RAM2004

    • Author(s)
      Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Preliminary Proceedings of the Tenth International Meeting on DNA Based Computers

      Pages: 50-59

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Thermodynamic Parameters Based on a Nearest-Neighbor Model for DNA Sequences with a Single-Bulge Loop2004

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Biochemistry 43・22

      Pages: 7143-7150

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] DNAヘアピンを利用したRAMによるアクエアスコンピューティング2004

    • Author(s)
      高橋 直人, 亀田 充史, 山本 雅人, 大内 東
    • Journal Title

      情報処理北海道シンポジウム2004講演論文集

      Pages: 16-17

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] サッカーボール型DNA分子の設計と基礎実験2004

    • Author(s)
      北 豊, 亀田 充史, 山本 雅人, 大内 東
    • Journal Title

      情報処理北海道シンポジウム2004講演論文集

      Pages: 14-15

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Construction and Verification of DNA Hairpin-based RAM2004

    • Author(s)
      Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the Ninth International Symposium on Artificial Life and Robotics (AROB 9th '04)

      Pages: 388-391

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] General Protocol for Evaluating the Degree of Occurrence of Mis-Hybridization2004

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the Ninth International Symposium on Artificial Life and Robotics (AROB 9th '04)

      Pages: 303-308

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] DNAコンピューティングと最適化2004

    • Author(s)
      山本雅人, 大内 東
    • Journal Title

      平成16年電気学会全国大会講演論文集 4-S19

      Pages: 13-16

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] DNA Computing, Optimizations (in Japanese)2004

    • Author(s)
      Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the annual conference of The Institute of Electrical Engineers of Japan 2004 Vol.4-S19

      Pages: 13-16

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Thermodynamic Parameters Based on a Nearest-Neighbor Model for DNA Sequences with a Single-Bulge Loop2004

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Biochemistry Vol.43, No.22

      Pages: 7143-7150

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Conformational Addressing using the Hairpin Structure of Single-strand DNA2003

    • Author(s)
      Atsushi Kameda, Masahito Yamamoto, Hiroki Uejima, Masami Hagiya, Kensaku Sakamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of 9th International Meetings on DNA Based Computers (DNA9)

      Pages: 197-201

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Nearest-Neighbor Thermodynamics of DNA Sequences with Single Bulge Loop2003

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of 9th International Meetings on DNA Based Computers (DNA9)

      Pages: 150-159

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The Effect of the Bulge Loop upon the Hybridization Process in DNA Computing2003

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      LNCS(ICES2003:The 5th International Conference on Evolvable Systems : From Biology to Hardware) 2943

      Pages: 170-179

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] The Effect on a Bonding Strength by the Freedom of Movement of a DNA strand on a Solid Support in DNA Computing2003

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 1901-1904

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Construction of DNA Hairpin based RAM2003

    • Author(s)
      Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 1897-1900

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] State Transition Model Based on DNA Polymerization2003

    • Author(s)
      Keisuke Hashimoto, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 1889-1892

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Two Step Search for DNA Sequence Design2003

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 1815-1818

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Study of the Efficient Parameter Setting based on Mahalanobis-Taguchi Strategy2003

    • Author(s)
      Masashi Nakatsugawa, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of the international Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 640-643

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Study of the Efficient Parameter Setting based on Mahalanobis-Taguchi Strategy, Proceedings of the International Technical Conference on Circuits/Systems2003

    • Author(s)
      Masashi Nakatsugawa, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Computers and Communications (ITC-CSCC03)

      Pages: 640-643

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Two Step Search for DNA Sequence Design, Proceedings of the International Technical Conference on Circuits/Systems2003

    • Author(s)
      Satoshi Kashiwamura, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Computers and Communications (ITC-CSCC03)

      Pages: 1815-1818

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] State Transition Model Based on DNA Polymerization, Proceedings of the International Technical Conference on Circuits/Systems2003

    • Author(s)
      Keisuke Hashimoto, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Computers and Communications (ITC-CSCC03)

      Pages: 1889-1892

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Construction of DNA Hairpin based RAM, Proceedings of the International Technical Conference on Circuits/Systems2003

    • Author(s)
      Naoto Takahashi, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Computers and Communications (ITC-CSCC03)

      Pages: 1897-1900

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The Effect on a Bonding Strength by the Freedom of Movement of a DNA strand on a Solid Support in DNA Computing2003

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Ohuchi
    • Journal Title

      Proceedings of the International Technical Conference on Circuits/Systems, Computers and Communications (ITC-CSCC03)

      Pages: 1901-1904

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] The Effect of the Bulge Loop upon the Hybridization Process in DNA Computing2003

    • Author(s)
      Fumiaki Tanaka, Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      LNCS(ICES2003 : The 5th International Conference on Evolvable Systems : From Biology to Hardware) Vol.2943

      Pages: 170-179

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A Separation Method for DNA Computing Based on Concentration Control2002

    • Author(s)
      Masahito Yamamoto, Atsushi Kameda, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi
    • Journal Title

      New Generation Computing 2

      Pages: 251-261

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Constructions of Security System for Information Encoded by DNA2002

    • Author(s)
      Yumi Kawazoe, Toshikazu Shiba, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Preliminary Proceedings of Eighth International Meeting on DNA Based Computers (DNA8)

      Pages: 337-337

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Improvement of the Reliability of Experiments in DNA Computing2002

    • Author(s)
      Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Preliminary Proceedings of Eighth International Meeting on DNA Based Computers (DNA8)

      Pages: 333-333

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Hierarchical DNA Memory based on Nested PCR2002

    • Author(s)
      Satoshi Kashiwamura, Masahito Yamamoto, Atsushi Kameda, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Preliminary Proceedings of Eighth International Meeting on DNA Based Computers (DNA8)

      Pages: 231-240

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] An Analysis of Computational Efficiency on DNA Computing2002

    • Author(s)
      Atsushi Kameda, Nobuo Matsuura, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of 3rd International Conference on Unconventional Models of Computation (UMC'02)

      Pages: 191-198

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A Security System for Personal Genome Information at DNA level2002

    • Author(s)
      Yumi Kawazoe, Toshikazu Shiba, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Proceedings of IEEE Computer Society Bioinformatics Conference

      Pages: 314-320

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Towards a High Reliability of the PCR Amplification Process in DNA Computing2002

    • Author(s)
      Masashi Nakatsugawa, Satoshi Kashiwamura, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      The International Journal of Computational Intelligence and Applications (IJCIA) 2(4)

      Pages: 423-432

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Local Search by Concentration Controlled DNA Computing2002

    • Author(s)
      Masahito Yamamoto, Atsushi Kameda, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi
    • Journal Title

      The International Journal of Computational Intelligence and Applications (IJCIA) 2(4)

      Pages: 447-456

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Design of a PCR Protocol for Improving Reliability of PCR in DNA Computing2002

    • Author(s)
      Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Proceedings of 2002 Congress on Evolutionary Computation (CEC2002)

      Pages: 91-96

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Simulation Analysis of Hybridization Process for DNA Computing with Concentration Control2002

    • Author(s)
      Masahito Yamamoto, Atsushi Kameda, Nobuo Matsuura, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Proceedings of 2002 Congress on Evolutionary Computation (CEC2002)

      Pages: 85-90

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Towards a General-Purpose Sequence Design System in DNA Computing2002

    • Author(s)
      Fumiaki Tanaka, Masashi Nakatsugawa, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Proceedings of 2002 Congress on Evolutionary Computation (CEC2002)

      Pages: 73-78

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] DNAコンピューティングパラダイム-その原理と工学応用への課題2002

    • Author(s)
      山本 雅人, 柴 肇一, 大内 東
    • Journal Title

      システム/情報/制御 46(5)

      Pages: 260-268

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] DNA Computing Paradigm-Its Principle and Applications, Systems2002

    • Author(s)
      Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      Control and Information (in Japanese) Vol.46, No.5

      Pages: 260-268

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Local Search by Concentration Controlled DNA Computing2002

    • Author(s)
      Masahito Yamamoto, Atsushi Kameda, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi
    • Journal Title

      The International Journal of Computational Intelligence and Applications (IJCIA) Vol.2, No.4

      Pages: 447-456

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Towards a High Reliability of the PCR Amplification Process in DNA Computing2002

    • Author(s)
      Masashi Nakatsugawa, Satoshi Kashiwamura, Masahito Yamamoto, Toshikazu Shiba, Azuma Ohuchi
    • Journal Title

      The International Journal of Computational Intelligence and Applications (IJCIA) Vol.2, No.4

      Pages: 423-432

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Constructions of Security System for Information Encoded by DNA2002

    • Author(s)
      Toshikazu Shiba, Yumi Kawazoe, Masahito Yamamoto, Azuma Ohuchi
    • Journal Title

      Preliminary Proceedings of Eighth International Meeting on DNA Based Computers (DNA8)

      Pages: 337

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A Separation Method for DNA Computing Based on Concentration Control2002

    • Author(s)
      Masahito Yamamoto, Atsushi Kameda, Nobuo Matsuura, Toshikazu Shiba, Yumi Kawazoe, Azuma Ohuchi
    • Journal Title

      New Generation Computing Vol.20

      Pages: 251-261

    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] 相互作用科学シリーズ 生命複雑系からの計算パラダイム2003

    • Author(s)
      大内 東, 他6名
    • Total Pages
      201
    • Publisher
      森北出版
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] Computational paradigm inspired by Complex/life systems (in Japanese)2003

    • Author(s)
      Azuma Ohuchi, et al.
    • Total Pages
      201
    • Publisher
      Morikita Shuppan
    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2006-07-11  

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