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2005 Fiscal Year Final Research Report Summary

Molecular cytogenetic studies on the evolution of genome structure in reptiles and birds.

Research Project

Project/Area Number 15370001
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Genome dynamics
Research InstitutionHokkaido University

Principal Investigator

MATSUDA Yoichi  Hokkaido University, Creative Research Initiative "Sousei", Professor, 創成科学共同研究機構, 教授 (70165835)

Co-Investigator(Kenkyū-buntansha) UMEHARA Chizuko  Hokkaido University, Creative Research Initiative "Sousei", Assistant Professor, 創成科学共同研究機構, 助手 (80291227)
AGATA Kiyokazu  Kyoto University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (70167831)
Project Period (FY) 2003 – 2005
Keywordschicken / turtle / snake / crocodile / FISH / chromosome map / conserved linkage homology / sex chromosome
Research Abstract

To clarify the process of karyotypic evolution and the origins of sex chromosomes and microchromosomes in birds and reptiles, we constructed chromosome maps of Chinese soft-shelled turtle, Japanese four-striped rat snake and Siam crocodile with 79, 105 and 85 functional genes, respectively. The comparative mapping between chicken and three reptile species suggests the followings : 1) the karyotypes of the common ancestor of the Archsauromorh were shared between birds and turtles, 2) chromosome rearrangements by centromeric fusion occurred at a level of whole genome in the lineage of crocodiles after centric fission of chromosomes 1 and 2 of the common ancestor, 3) the intermediate karyotypes between the common ancestor and the crocodiles might have been conserved in the lineage of caimans, and 4) in the Lepidosauria high frequencies of chromosome rearrangements occurred independently from the Archosauromorph.
We cloned reptile homologues of six chicken Z-linked genes, ACO1, ATP5A1, CHD1, DMRT1, GHR and RPS6, from the turtle and the snake with ZZ/ZW-type sex chromosomes and the crocodile with undifferentiated sex chromosomes, and mapped them to the chromosomes of the three species. All the genes were localized to the long arm of the turtle chromosome 6, the short arm of the snake chromosome 2 and the short arm of the crocodile chromosome 3. These results indicate that the genetic linkage on chicken Z chromosome has been highly conserved in reptiles, and that the causative genes of sex determination may be different between birds and reptiles.

  • Research Products

    (30 results)

All 2006 2005 2004 2003

All Journal Article (30 results)

  • [Journal Article] Chromosomal assignment and genomic structure of lasp-1 and lasp-2 genes in chicken.2006

    • Author(s)
      Terasaki A., et al.
    • Journal Title

      Cytogenetics and Genome Research 112

      Pages: 141-147

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] cDNA-based gene mapping and GC_3 profiling in soft-shelled turtle suggests chromosome size-dependent GC-bias shared by sauropsids.2006

    • Author(s)
      Kuraku S., et al.
    • Journal Title

      Chromosome Research 14

      Pages: 187-202

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A novel family of repetitive DNA sequences amplified site-specifically on the W chromosomes in Neognathous birds.2006

    • Author(s)
      Yamada K., et al.
    • Journal Title

      Chromosome Research (in press)

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] 脊椎動物における性染色体の進化と性決定様式の多様性2006

    • Author(s)
      松田 洋一, 他
    • Journal Title

      細胞工学 25

      Pages: 353-358

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Chromosomal assignment and genomic structure of lasp-1 and lasp-2 genes in chicken.2006

    • Author(s)
      Terasaki A. et al.
    • Journal Title

      Cytogenet.Genome Res. 112

      Pages: 141-147

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] cDNA-based gene mapping and GC_3 profiling in soft-shelled turtle suggests chromosome size-dependent GC-bias shared by sauropsids.2006

    • Author(s)
      Kuraku S. et al.
    • Journal Title

      Chromosome Res. 14

      Pages: 187-202

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A novel family of repetitive DNA sequence Samplified site-specifically on the W chromosomes in Neognathous birds.2006

    • Author(s)
      Yamada K. et al.
    • Journal Title

      Chromosome Res. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Sex chromosome evolution and diversity of sex determination systems in vertebrates.2006

    • Author(s)
      Matsuda Y. et al.
    • Journal Title

      Cell Technology 25

      Pages: 353-358

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian AscI2/Mash2-Igf2-H19 region.2005

    • Author(s)
      Yokomine T., et al.
    • Journal Title

      Genome Research 15

      Pages: 154-165

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Molecular and cytogenetic characterization of site-specific repetitive DNA sequences in the Chinese soft-shelled turtle (Pelodiscus sinensis, Trionychidae).2005

    • Author(s)
      Yamada K., et al.
    • Journal Title

      Chromosome Research 13

      Pages: 33-46

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Highly conserved linkage homology between birds and turtles : Bird and turtle chromosomes are precise counterparts of each other.2005

    • Author(s)
      Matsuda Y., et al.
    • Journal Title

      Chromosome Research 13

      Pages: 601-615

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structural and functional analysis of a 0.5-Mb chicken region orthologous to the imprinted mammalian Asc12/Mash2-Igf2-H19 region.2005

    • Author(s)
      Yokomine T. et al.
    • Journal Title

      Genome Res. 15

      Pages: 154-165

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Molecular and cytogenetic characterization of site-specific repetitive DNA sequences in the Chinese soft-shelled turtle (Pelodiscus sinensis, Trionychidae).2005

    • Author(s)
      Yamada K. et al.
    • Journal Title

      Chromosome Res. 13

      Pages: 33-46

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Highly conserved linkage homology between birds and turtles : Bird and turtle chromosomes are precise counterparts of each other.2005

    • Author(s)
      Matsuda Y. et al.
    • Journal Title

      Chromosome Res. 13

      Pages: 601-615

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A new family of satellite DNA sequences as a major component of centromeric heterochromatin in owls(Strigiformes).2004

    • Author(s)
      Yamada K., et al.
    • Journal Title

      Chromosoma 112

      Pages: 277-287

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Molecular cytogenetic definition of the chicken genome : the first complete avian karyotype.2004

    • Author(s)
      Masabanda J., et al.
    • Journal Title

      Genetics 166

      Pages: 1367-1373

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A comparative karyological study of the blue-breasted quail (Coturnix chinensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae).2004

    • Author(s)
      Shibusawa M., et al.
    • Journal Title

      Cytogenetics and Genome Research 106

      Pages: 82-90

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Karyotypic evolution in the Galliformes : An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny.2004

    • Author(s)
      Shibusawa M., et al.
    • Journal Title

      Cytogenetics and Genome Research 106

      Pages: 111-119

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A genome-wide screen identifies a single β-defensin gene cluster in the chicken : implications for the origin and evolution of mammalian defensins.2004

    • Author(s)
      Xiao Y., et al.
    • Journal Title

      BMC Genomics 5

      Pages: 56-66

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A new family of satellite DNA sequences as a major component of centromeric heterochromatin in owls (Strigiformes).2004

    • Author(s)
      Yamada K. et al.
    • Journal Title

      Chromosoma 112

      Pages: 277-287

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Molecular cytogenetic definition of the chicken genome : the first complete avian karyotype.2004

    • Author(s)
      Masabanda J. et al.
    • Journal Title

      Genetics 166

      Pages: 1367-1373

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A comparative karyological study of the blue-breasted quail (Coturnix chinensis, Phasianidae) and California quail (Callipepla californica, Odontophoridae).2004

    • Author(s)
      Shibusawa M. et al.
    • Journal Title

      Cytogenet.Genome Res. 106

      Pages: 82-90

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Karyotypic evolution in the Galliformes : An examination of the process of karyotypic evolution by comparison of the molecular cytogenetic findings with the molecular phylogeny.2004

    • Author(s)
      Shibusawa M. et al.
    • Journal Title

      Cytogenet.Genome Res. 106

      Pages: 111-119

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] A genome-wide screen identifies a single β-defensin gene cluster in the chicken : implications for the origin and evolution of mammalian defensins.2004

    • Author(s)
      Xiao Y.et al.
    • Journal Title

      BMC Genomics 5

      Pages: 56-66

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Functional domains of chicken mitochondrial transcription factor A for the maintenance of mitochondrial DNA copy number in lymphoma cell line DT40.2003

    • Author(s)
      Matsushima Y., et al.
    • Journal Title

      Journal of Biological Chemistry 278

      Pages: 31149-31158

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Molecular cloning and characterization of avian bombesin-like peptide receptors : new tools for investigating molecular basis for ligand selectivity.2003

    • Author(s)
      Iwabuchi M., et al.
    • Journal Title

      British Journal of Pharmacology 139

      Pages: 555-566

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Bh(black at hatch) gene that causes abnormal feather pigmentation maps to chromosome 1 of Japanese quail.2003

    • Author(s)
      Niwa T., et al.
    • Journal Title

      Pigment Cell Research 16

      Pages: 656-661

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Functional domains of chicken mitochondrial transcription factor A for the maintenance of mitochondrial DNA copy number in lymphoma cell line DT40.2003

    • Author(s)
      Matsushima Y. et al.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 31149-31158

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Molecular cloning and characterization of avian bombesin-like peptide receptors : new tools for investigating molecular basis for ligand selectivity.2003

    • Author(s)
      Iwabuchi M. et al.
    • Journal Title

      British J.Pharmacol. 139

      Pages: 555-566

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Bh (black at hatch) gene that causes abnormal feather pigmentation maps to chromosome 1 of Japanese quail.2003

    • Author(s)
      Niwa T.et al.
    • Journal Title

      Pigment Cell Res. 16

      Pages: 656-661

    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2007-12-13  

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