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2005 Fiscal Year Final Research Report Summary

Molecular study on large conformational changes of protein that relates biofunction and diseases

Research Project

Project/Area Number 15370047
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionTottori University

Principal Investigator

KAWATA Yasushi  Tottori University, Faculty of Engineering, Professor, 工学部, 教授 (40177697)

Co-Investigator(Kenkyū-buntansha) MIZOBATA Tomohiro  Tottori University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (50263489)
HONGO Kunihiro  Tottori University, Faculty of Engineering, Associate Professor, 工学部, 助手 (80335504)
Project Period (FY) 2003 – 2005
KeywordsAmyloid fibril / Oligomeric protein / α-synuclein / Molecular chaperone / Molecular compactness / Functional mechanism / Chaperonin / Neurodegenerative disease
Research Abstract

Studies on protein stability including global conformational changes and functional mechanism of molecular chaperone, which are closely related to biofunction and diseases, were performed in detail and following results were obtained.
1.Study on structure and stability of oligomeric protein : We have determined X-ray crystal structure of thermostable aspartase enzyme, and elucidated the mechanism of thermostability and active site structure of the enzyme comprising from 4 identical subunits. On the other hand, we studied solution structure and molecular unfolding mechanism of E.coli co-chaperonin GroES heptamer at high protein concentrations by using small angle X-ray scattering.
2.Study on conformational changes and amyloid fibril formation of protein : We have found that oligomeric protein GroES, that is a non-related protein to disease, formed a typical amyloid fibril under a certain condition, and elucidated the fibril formation mechanism in terms of molecular compactness. Furthermore, we studied fibril formation mechanism of α-synuclein, a causative protein of Parkinson disease, and proved that the amyloid fibril formation of α-synuclein is accelerated markedly in the presence of preformed seeds of other different protein's fibrils.
3.Study on structure and function of molecular chaperone : We have studied in detail structure and function relationship of group I chaperonin GroEL from E.coli and group II chaperonins from hyper-thermostable strains. We have found that domain movements of GroEL are very important for the function and that cobalt and manganese ions are novel factors for nucleotide hydrolysis activity and substrate refolding function of group II chaperonin. Furthermore, we have investigated function of zebrafish Hsp60, and elucidated that Hsp60 is required for blastema formation and maintenance during regeneration.

  • Research Products

    (14 results)

All 2006 2005 2004 2003

All Journal Article (12 results) Book (2 results)

  • [Journal Article] A Novel ATP/ADP Hydrolysis Activity of Hyperthermostable Group II Chaperonin in the Presence of Cobalt or Manganese Ion2006

    • Author(s)
      Kunihiro Hongo et al.
    • Journal Title

      FEBS Letters 580

      Pages: 34-40

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] A Novel ATP/ADP Hydrolysis Activity of Hyperthermostable Group II Chaperonin in the Presence of Cobalt or Manganese Ion2006

    • Author(s)
      Kunihiro Hongo, Hidenori Hirai, Chisato Uemura, Shujiro Ono, Junjiro Tsunemi, Takashi Higurashi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      FEBS Letters 580

      Pages: 34-40

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Amyloid-like Fibril Formation of Co-chaperonin GroES : Nucleation and Extension Prefer Different Degrees of Molecular Compactness2005

    • Author(s)
      Takashi Higurashi, Hisashi Yagi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      J. Mol. Biol. 351・5

      Pages: 1057-1069

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Amyloid Fibril Formation of a-Synuclein is Accelerated by Preformed Amyloid Seeds of Other Proteins : Implications for the Mechanism of Transmissible Conformational Diseases2005

    • Author(s)
      Hisashi Yagi, Eiko Kusaka, Kunihiro Hongo, Tomohiro Mizobana, Yasushi Kawata
    • Journal Title

      J. Biol. Chem. 280・46

      Pages: 38609-38616

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Amyloid-like Fibril Formation of Co-chaperonin GroES : Nucleation and Extension Prefer Different Degrees of Molecular Compactness2005

    • Author(s)
      Takashi Higurashi, Hisashi Yagi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Molecular Biology 351(5)

      Pages: 1057-1069

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Amyloid Fibril Formation of a-Synuclein is Accelerated by Preformed Amyloid Seeds of Other Proteins : Implications for the Mechanism of Transmissible Conformational Diseases2005

    • Author(s)
      Hisashi Yagi, Eiko Kusaka, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Biological Chemistry 280(46)

      Pages: 38609-38616

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Stopped-Flow Fluorescence Analysis of the Conformational Changes in the GroEL Apical Domain : Relationships between Movements in the Apical Domain and the Quaternary Structure of GroEL2004

    • Author(s)
      Masaaki Taniguchi, et al.
    • Journal Title

      J. Biol. Chem. 279・16

      Pages: 16368-16376

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Stopped-Flow Fluorescence Analysis of the Conformational Changes in the GroEL Apical Domain : Relationships between Movements in the Apical Domain and the Quaternary Structure of GroEL2004

    • Author(s)
      Masaaki Taniguchi, Tatsunari Yoshimi, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Biological Chemistry 279(16)

      Pages: 16368-16376

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1 : Structure-based Exploration of Functional Sites in the Aspartase Family2003

    • Author(s)
      Tomomi Fujii, Hisanobu Sakai, Yasushi Kawata, Yasuo Hata
    • Journal Title

      J. Mol. Biol. 328・3

      Pages: 635-654

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-Angle X-Ray Scattering2003

    • Author(s)
      Takashi Higurashi, et al.
    • Journal Title

      J. Mol. Biol. 333・3

      Pages: 605-620

    • Description
      「研究成果報告書概要(和文)」より
  • [Journal Article] Crystal Structure of Thermostable Aspartase from Bacillus sp.YM55-1 : Structure-based Exploration of Functional Sites in the Aspartase Family2003

    • Author(s)
      Tomomi Fujii, Hisanobu Sakai, Yasushi Kawata, Yasuo Hata
    • Journal Title

      Journal of Molecular Biology 328(3)

      Pages: 635-654

    • Description
      「研究成果報告書概要(欧文)」より
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-Angle X-Ray Scattering2003

    • Author(s)
      Takashi Higurashi, Yuzuru Hiragi, Kaoru Ichimura, Yasutaka Seki, Kunitsugu Soda, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Molecular Biology 333(3)

      Pages: 605-620

    • Description
      「研究成果報告書概要(欧文)」より
  • [Book] タンパク質工学2004

    • Author(s)
      加藤昭夫, 内海成, 内海俊彦, 河田康志, 山縣ゆり子, 山岸明彦, 山田守, 吉川正明
    • Total Pages
      305
    • Publisher
      医学出版
    • Description
      「研究成果報告書概要(和文)」より
  • [Book] Protein Engineering (Ed.By Akio Kato)2004

    • Author(s)
      Akio Kato, Shigeru Utsumi, Toshihiko Utsumi, Yasushi Kawata, Yuriko Yamagata, Akihiko Yamagishi, Masaaki Yoshikawa
    • Total Pages
      305
    • Publisher
      Igakushuppan Co.
    • Description
      「研究成果報告書概要(欧文)」より

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Published: 2007-12-13  

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