2017 Fiscal Year Final Research Report
Analysis of cell-cell communication using comparison of gene co-expression for different tissues
| Project/Area Number |
15K18464
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| Research Category |
Grant-in-Aid for Young Scientists (B)
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| Allocation Type | Multi-year Fund |
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| Research Field |
System genome science
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| Research Institution | Tohoku University |
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Principal Investigator |
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| Research Collaborator |
Kinoshita Kengo 東北大学, 大学院情報科学研究科, 教授 (60332293)
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| Project Period (FY) |
2015-04-01 – 2018-03-31
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| Keywords | 遺伝子共発現 / ネットワーク生物学 / シロイヌナズナ / データベース / 共発現データベース / ゲノム進化 |
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| Outline of Final Research Achievements |
Cell functions are composed of the individual functions of many genes. Gene network analysis is widely used to estimate the functional combination of genes.
Similarly with protein-protein interaction network analysis, gene co-expression network analysis, which is a similarity of gene expression profiles, is widely used as network analysis. In this study, I have developed a methodology to compare and integrate multiple gene co-expression networks among multiple tissues of a model plant, Arabidopsis. The results based on the new methodologies in this study were available in a plant co-expression database, ATTED-II [ http://atted.jp/ ].
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| Free Research Field |
システムゲノム科学
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