先進ゲノム解析研究推進プラットフォーム

2019 Fiscal Year Annual Research Report

• Project/Area Number: 16H06279
• Research Institution: National Institute of Genetics
• Principal Investigator: 小原 雄治 国立遺伝学研究所, 先端ゲノミクス推進センター, 特任教授
• Project Period (FY): 2016 – 2021
• Keywords: 次世代DNAシーケンサー / 新規ゲノム配列決定 / リシーケンシング / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター

Outline of Annual Research Achievements

①総括支援活動では、支援課題の公募を行った。審査委員はすべてプラットフォーム外の専門家とし、経費上限設定などによりできるだけ多くの採択ができるように努めた結果、371件の応募から168件を採択し支援した(採択率45.3%)。支援課題は科研費生物系のほぼすべての分野に渡っており、支援の成果を含む論文として2019年度に117報が発表された。この中には「魚類の淡水への進出と放散の鍵を担う代謝遺伝子」(Science)、「植物ミトコンドリアのゲノム編集による細胞質雄性不稔性の回復」(Nature Plants)、「ncRNA作動エレメントの配列構造の同定」(EMBO J)、「メタゲノム・メタボローム解析により大腸がん発症関連細菌を特定」(Nature Medicine)など広い分野でのレベルの高い成果が含まれている。研究コミュニティ形成のために拡大班会議や情報解析講習会を開催し、またヒトゲノム研究倫理を考える会を開催した。
②大規模配列解析拠点ネットワーク支援活動においては、最先端技術を支援に提供するとともに、染色体レベルの新規ゲノム配列決定(遺伝研)、シングルセル解析(東大新領域)、パクテリアにおける高精度SNP 同定システの開発(九大)、リキッドバイオプシー検出感度の上昇(札医大)等支援技術の整備や高度化を進めた。
③高度情報解析支援ネットワーク活動では、支援から浮かび上がった課題を解決するソフトウェアの開発を進め、実際の課題への適用を進めた。2019年度には、ヘテロ接合度が高いゲノムのアッセンブルツールPlatanus-allee(東工大)、高速オルソログ遺伝子同定プログラムSonicParanoid (東大理)、高精度染色体ゲノムアセンブリツールHiC-Hiker (東大新領域)、微生物の比較ゲノム解析パイプライン(九大)等の開発を進め、②と合わせて31報の論文を発表した。

Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・支援への応募数は増えたが、適切な選考ができた。申請は、解析の5つの対象(ヒト、マウス、マウス以外動物、植物、微生物)と6つの技術項目(新規ゲノム解析、変異解析、修飾/エピゲノム解析、RNA解析、メタゲノム等解析、超高感度解析)及び情報解析との各組合せを審査区分として受け付けた。審査は二段階とし、第一段審査では各審査区分に5名の審査委員(すべてプラットフォーム外の専門家)を委嘱し、書面審査と合議により支援候補の順位を決定した。第二段審査は各審査区分の主査で行い、全体予算や技術面等を考慮して採択課題を決定した。昨年度に比べ90件増の371件の応募になり、また支援希望内容も拡大しているが、経費上限の設定や支援内容精査などにより採択率を50%近くに維持することができた。科研費ほぼ全種目から課題採択できており、同程度の評価の場合は若手・女性・少額科研費からの課題及び新たな申請者を優先するなどの措置をとり、多様な課題への支援ができた。公募の機会増の要望を受け2020年度から年2回公募にするために前倒しで第1回公募を開始し、4月の最終決定に向け、1-3月に上記と同様のプロセスで支援課題候補を決定した。
・支援成果を含む論文発表は2019年度は117報と順調に増えている。
・支援技術の高度化のための活動も大規模DNAシーケンシング支援、高度情報解析支援共に進めることができ、高度化の論文は31報発表した。
・拡大班会議を開催し、支援依頼者の若手共同研究者の旅費援助をするなどして、研究コミュニティ作りが進んだ。また、情報解析講習会や解析パイプラインを整備などにより、支援依頼者が自力で解析できるように技術移転を進めた。
・これらの活動を、当初計画通り国立遺伝学研究所を中核機関として、参加する班員が所属する主な機関を連携機関とする連携ネットワークを形成して進めることができた。

Strategy for Future Research Activity

・最先端の技術をより多く提供するために、支援拠点における支援技術の高度化を進めることが重要である。ゲノム解析は技術進展のスピードが特に速く、2-3年で解析手法が様変わりするために、新たなDNAシーケンシング技術の導入・開発、目的に沿った情報解析技術の開発と整備が中心になる。そのためにも支援のための機器整備を工夫して進めていく。
・支援課題の採択率は、現状は予算の制限から50%にとどまっており、より多い課題の支援が求められる。現状では、各支援課題の支援経費の上限を設けて、これを超す分は経費負担を求める形にすることで、ようやくこの採択率になっている。解析内容を精査する効果はあるが、一方でゲノム解析においては一定規模以上で支援しないと意味のある結果が出ないことも多く、若手をはじめ、経費面で敷居が高くなるケースもある。そのためにも技術高度化により、より効果的な解析技術の整備やコスト削減を図っていく必要がある。
・大量データ解析の支援要望はますます増加していることから、解析パイプラインの整備とともに、情報解析講習会の開催を継続拡充する必要がある。また、ゲノム解析の感覚を研究者コミュニティに共有してもらうためにも、拡大班会議などの場が必要である。2020年度は新型コロナウィルス対応で困難ではあるが、工夫して進めていきたい。

Research Products

• [Int'l Joint Research] City University of New York/National Cancer Institute/The Jackson Laboratory for Genomic Medicine(USA)
  • Country Name: USA
  • Counterpart Institution: City University of New York/National Cancer Institute/The Jackson Laboratory for Genomic Medicine
  • # of Other Institutions: 19
• [Int'l Joint Research] European Molecular Biology Laboratory/German Cancer Research Center/Max Delbruck Centre for Molecular Medicine(Germany)
  • Country Name: Germany
  • Counterpart Institution: European Molecular Biology Laboratory/German Cancer Research Center/Max Delbruck Centre for Molecular Medicine
  • # of Other Institutions: 7
• [Int'l Joint Research] CHU de Toulouse/Institut Pasteur/Université de Toulouse(France)
  • Country Name: France
  • Counterpart Institution: CHU de Toulouse/Institut Pasteur/Université de Toulouse
  • # of Other Institutions: 3
• [Int'l Joint Research] Chulalongkorn University/Bangkok Medical Center/Rajavithi Hospital(Thailand)
  • Country Name: Thailand
  • Counterpart Institution: Chulalongkorn University/Bangkok Medical Center/Rajavithi Hospital
  • # of Other Institutions: 1
• [Int'l Joint Research] CSIRO/Curtin University/University of Technology(Australia)
  • Country Name: Australia
  • Counterpart Institution: CSIRO/Curtin University/University of Technology
  • # of Other Institutions: 1
• [Int'l Joint Research]
  • # of Other Institutions: 29
• [Journal Article] Heterogeneous fluid-like movements of chromatin and their implications to transcription. (2020)
  • Author(s): Ashwin SS, Maeshima K, Sasai M.
  • Journal Title: Biophys Rev. Volume: 12 Issue: 2 Pages: 461-468
  • DOI: 10.1007/s12551-020-00675-8
  • Peer Reviewed / Open Access
• [Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data (2020)
  • Author(s): Vasanthan Jayakumar, Hiromi Ishii, Misato Seki, Wakako Kumita, Takashi Inoue, Sumitaka Hase, Kengo Sato, Hideyuki Okano, Erika Sasaki, Yasubumi Sakakibara
  • Journal Title: BMC Genomics Volume: 21 Pages: 243
  • DOI: 10.1186/s12864-020-6657-2
  • Peer Reviewed / Open Access
• [Journal Article] Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis (2020)
  • Author(s): Yamada T., Imamachi N., Imamura K., Taniue K., Kawamura T., Suzuki Y., Nagahama M., Akimitsu N.
  • Journal Title: Cell Reports Volume: 31 Pages: 107542
  • DOI: 10.1016/j.celrep.2020.107542
  • Peer Reviewed / Open Access
• [Journal Article] H3K27me3 demethylase UTX regulates the differentiation of a subset of bipolar cells in the mouse retina. (2020)
  • Author(s): Umutoni, D., Iwagawa, T., Baba, Y., Tsuhako, A., Honda, H., Aihara, M, Watanabe, S.
  • Journal Title: Genes to Cells Volume: 25 Pages: 402-412
  • DOI: 10.1111/gtc.12767
  • Peer Reviewed / Open Access
• [Journal Article] Dysfunctional missense variant of OAT10/SLC22A13 decreases gout risk and serum uric acid levels. (2020)
  • Author(s): Higashino T, Morimoto K, Nakaoka H, Toyoda Y, Kawamura Y, Shimizu S, Nakamura T, Hosomichi K, Nakayama A, Ooyama K, Ooyama H, Shimizu T, Ueno M, Ito T, Tamura T, Naito M, Nakashima H, Kawaguchi M, Takao M, Kawai Y, Osada N, Ichida K, Yamamoto K, Suzuki H, Shinomiya N, Inoue I, Takada T, Matsuo H
  • Journal Title: Ann Rheum Dis. Volume: 79 Pages: 164-166
  • DOI: 10.1136/annrheumdis-2019-216044
  • Peer Reviewed / Open Access
• [Journal Article] Subtype-specific Gout Susceptibility Loci and Enrichment of Selection Pressure on ABCG2 and ALDH2 Identified by Subtype Genome-Wide Meta-Analyses of Clinically Defined Gout Patients (2020)
  • Author(s): Nakayama A, Nakatochi M, Kawamura Y, Yamamoto K, Nakaoka H, Shimizu S, Higashino T, Koyama T, Hishida A, Kuriki K, Watanabe M, Shimizu T, Ooyama K, Ooyama H, Nagase M, Hidaka Y, Matsui D, Tamura T, Nishiyama T, Shimanoe C, Katsuura-Kamano S, Takashima N, Shirai Y, Kawaguchi M, Takao M, Sugiyama R, Takada Y, Nekamura T, Nakashima H, Matsuo H, et al. ; Japan Gout Genomics Consortium (Japan Gout).
  • Journal Title: Ann Rheum Dis. Volume: 79 Pages: 657-665
  • DOI: 10.1136/annrheumdis-2019-216644
  • Peer Reviewed / Open Access
• [Journal Article] The m6A Methyltransferase METTL3 Contributes to Transforming Growth Factor-beta-induced Epithelial-Mesenchymal Transition of Lung Cancer Cells Through the Regulation of JUNB (2020)
  • Author(s): Sasithorn Wanna-Udom, Minoru Terashima, Hanbing Lyu, Akihiko Ishimura, Takahisa Takino, Matomo Sakari, Toshifumi Tsukahara, Takeshi Suzuki
  • Journal Title: Biochem Biophys Res Commun. Volume: 524 Pages: 150-155
  • DOI: 10.1016/j.bbrc.2020.01.042
  • Peer Reviewed / Open Access
• [Journal Article] Finding the Direct Optimal RNA Barrier Energy and Improving Pathways with an Arbitrary Energy Model (2020)
  • Author(s): Hiroki Takizawa, Junichi Iwakiri, Goro Terai and Kiyoshi Asai
  • Journal Title: Bioinformatics
  • DOI: 10.1093/bioinformatics/btaa469
  • Peer Reviewed / Open Access
• [Journal Article] MoAIMS : Efficient Software for Detection of Enriched Regions of MeRIP-Seq (2020)
  • Author(s): Yiqian Zhang and Michiaki Hamada
  • Journal Title: BMC Bioinformatics Volume: 21 Pages: 103
  • DOI: 10.1186/s12859-020-3430-0
  • Peer Reviewed / Open Access
• [Journal Article] E-test versus agar dilution for antibiotic susceptibility testing of Helicobacter pylori : a comparison study. (2020)
  • Author(s): Miftahussurur M, Fauzia KA, Nusi IA, Setiawan PB, Syam AF, Waskito LA, Doohan D, Ratnasari N, Khomsan A, Adnyana IK, Akada J, Yamaoka Y.
  • Journal Title: BMC Res Notes. Volume: 13 Issue: 1 Pages: 22
  • DOI: 10.1186/s13104-019-4877-9
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Multiomics investigation revealing the characteristics of HIV-1-infected cells in vivo (2020)
  • Author(s): Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
  • Journal Title: Cell Reports
  • Peer Reviewed / Open Access
• [Journal Article] Tandem paired nicking promotes precise genome editing with scarce interference by p53 (2020)
  • Author(s): Hyodo T, Rahman ML, Karnan S, Ito T, Toyoda A, Ota A, Wahiduzzaman M, Tsuzuki S, Okada Y, Hosokawa Y, Konishi H
  • Journal Title: Cell Reports Volume: 30 Pages: 1195-1207
  • DOI: 10.1016/j.celrep.2019.12.064
  • Peer Reviewed / Open Access
• [Journal Article] Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin. (2020)
  • Author(s): Montgomery, S. A., Tanizawa, Y., Galik, B., Wang, N., Ito, T., Mochizuki, T., Akimcheva, S., Bowman, J. L., Cognat, V., Maréchal-Drouard, L., Ekker, H., Hong, S. F., Kohchi, T., Lin, S. S., Liu, L. D., Nakamura, Y., Valeeva, L. R., Shakirov, E. V., Shippen, D. E., Wei, W. L., Yagura, M., Yamaoka, S., Yamato, K. T., Liu, C., Berger, F.
  • Journal Title: Curr. Biol. Volume: 30 Pages: 573-588
  • DOI: 10.1016/j.cub.2019.12.015
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Maternal almondex, a neurogenic gene, is required for proper subcellular Notch distribution in early Drosophila embryogenesis. (2020)
  • Author(s): Das, P., Salazar, J. L., Li-Kroeger, D., Yamamoto, S., Nakamura, M., Sasamura, T., Inaki, M., Masuda, W., Kitagawa, M., Yamakawa, M., and Matsuno, K.
  • Journal Title: Dev. Grow. & Diff. Volume: 62 Pages: 80-93
  • DOI: 10.1111/dgd.12639
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Transient and lineage-restricted requirement of Ebf3 for sternum ossification (2020)
  • Author(s): Kuriki M, Sato F, Arai H, Sogabe M, Kaneko M, Kiyonari H, Kawakami K, Yoshimoto Y, Shukunami C, and Sehara-Fujisawa A.
  • Journal Title: Development Volume: 147 Issue: 9
  • DOI: 10.1242/dev.186239
  • Peer Reviewed / Open Access
• [Journal Article] LncRNA-dependent nuclear stress bodies promote intron retention through SR protein phosphorylation (2020)
  • Author(s): Ninomiya, K., Adachi, S., Natsume, T., Iwakiri, J., Terai, G., Asai, K., Hirose, T.
  • Journal Title: EMBO J Volume: 39 Pages: e102729
  • DOI: 10.15252/embj.2019102729
  • Peer Reviewed / Open Access
• [Journal Article] tRIP-seq reveals repression of premature polyadenylation by co-transcriptional FUS-U1 snRNP assembly. (2020)
  • Author(s): Masuda A, Kawachi T, Takeda JI, Ohkawara B, Ito M, Ohno K.
  • Journal Title: EMBO Rep Volume: 21 Pages: e49890
  • DOI: 10.15252/embr.201949890
  • Peer Reviewed / Open Access
• [Journal Article] The mechanoreceptor DEG-1 regulates cold tolerance in Caenorhabditis elegans (2020)
  • Author(s): Takagaki N., Ohta A., Ohnishi K., Kawanabe A., Minakuchi Y., Toyoda A., Fujiwara Y., Kuhara A.
  • Journal Title: EMBO reports Volume: 21 Pages: 1-14
  • DOI: 10.15252/embr.201948671
  • Peer Reviewed / Open Access
• [Journal Article] Physiological and genomic characterization of a new “Candidatus Nitrotoga” isolate (2020)
  • Author(s): Kento Ishii, Hirotsugu Fujitani, Yuji Sekiguchi, Satoshi Tsuneda
  • Journal Title: Environmental Microbiology
  • DOI: 10.1111/1462-2920.15015
  • Peer Reviewed
• [Journal Article] CNV analysis using whole exome sequencing identified biallelic CNVs of VPS13B in siblings with intellectual disability. (2020)
  • Author(s): Enomoto Y, Tsurusaki Y, Yokoi T, Abe-Hatano C, Ida K, Naruto T, Mitsui J, Tsuji S, Morishita S, Kurosawa K.
  • Journal Title: Eur J Med Genet. Volume: 63 Issue: 1 Pages: 103610
  • DOI: 10.1016/j.ejmg.2018.12.015
  • Peer Reviewed
• [Journal Article] Artificial generation of centromeres and kinetochores to understand their structure and function (2020)
  • Author(s): Hori Tetsuya、Fukagawa Tatsuo
  • Journal Title: Experimental Cell Research Volume: 389 Pages: 111898
  • DOI: 10.1016/j.yexcr.2020.111898
  • Peer Reviewed
• [Journal Article] Geographical gradients of genetic diversity and differentiation among the southernmost marginal populations of Abies sachalinensis revealed by EST-SSR polymorphism (2020)
  • Author(s): Kitamura Keiko, Uchiyama Kentaro, Ueno Saneyoshi, Ishizuka Wataru, Tsuyama Ikutaro and Goto Susumu
  • Journal Title: Forests Volume: 11 Pages: 233
  • DOI: 10.3390/f11020233
  • Peer Reviewed / Open Access
• [Journal Article] Molecular mechanisms underlying pupal protective color switch in Papilio polytes butterflies. (2020)
  • Author(s): Yoda, S., Otaguro, E. Nobuta, M. and Fujiwara, H
  • Journal Title: Frontiers in Ecology and Evolution Volume: 8 Pages: 51
  • DOI: 10.3389/fevo.2020.00051
  • Peer Reviewed / Open Access
• [Journal Article] Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production. (2020)
  • Author(s): Maiko Umemura, Kaoru Kuriiwa, Linh Viet Dao, Tetsuya Okuda, Goro Terai
  • Journal Title: Fungal Biology and Biotechnology Volume: 7 Pages: 3
  • DOI: 10.1186/s40694-020-00093-1
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Accumulation of deleterious mutations in landlocked threespine stickleback populations. (2020)
  • Author(s): Yoshida, K., Ravinet, M., Makino, T., Toyoda, A., Kokita, T., Mori, S., and Kitano, J.
  • Journal Title: Genome Biology and Evolution Volume: 12 Pages: 479-492
  • DOI: 10.1093/gbe/evaa065
  • Peer Reviewed / Open Access
• [Journal Article] Long read sequencing for non-small cell lung cancer genomes (2020)
  • Author(s): Yoshitaka Sakamoto, Liu Xu, Masahide Seki, Toshiyuki T. Yokoyama, Masahiro Kasahara, Yukie Kashima, Akihiro Ohashi, Yoko Shimada, Noriko Motoi, Katsuya Tsuchihara, Susumu S. Kobayashi, Takashi Kohno, Yuichi Shiraishi, Ayako Suzuki, Yutaka Suzuki
  • Journal Title: Genome Research
  • Peer Reviewed / Open Access
• [Journal Article] A Common variant of LDL receptor related protein 2 (LRP2) gene is associated with gout susceptibility : meta-analysis in Japanese population (2020)
  • Author(s): Akashi A, Nakayama A, Kamatani Y, Higashino T, Shimizu S, Kawamura Y, Imoto M, Naito M, Hishida A, Kawaguchi M, Takao M, Matsuo M, Takada T, Ichida K, Ooyama H, Shinomiya N, Matsuo H
  • Journal Title: Hum Cell. Volume: 33 Pages: 303-307
  • DOI: 10.1007/s13577-019-00318-5
  • Peer Reviewed / Open Access
• [Journal Article] Dictyobacter vulcani sp. nov., belonging to the class Ktedonobacteria, isolated from soil of the Mt Zao volcano (2020)
  • Author(s): Zheng, Y., Wang, C. M., Sakai, Y., Abe, K., Yokota, A., and Yabe, S
  • Journal Title: Int. J. Syst. Evol. Microbiol Volume: 70 Pages: 1805-1813
  • DOI: 10.1099/ijsem.0.003975
  • Peer Reviewed / Open Access
• [Journal Article] Cd9 protects photoreceptors from injury and potentiates Edn2 expression (2020)
  • Author(s): Iwagawa, T., Aihara, Y., Umutoni, D. Baba, Y., Murakami, A. Miyado, K., Watanabe, S.
  • Journal Title: Invest. Ophthalmol. Vis. Sci. Volume: 61 Pages: 43842
  • DOI: 10.1167/iovs.61.3.7
  • Peer Reviewed
• [Journal Article] Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals. (2020)
  • Author(s): Tsukimi T, Watabe T, Tanaka K, Sato MP, Suzuki H, Tomita M, Fukuda S.
  • Journal Title: J Genomics Volume: 8 Pages: 37-42
  • DOI: 10.7150/jgen.38516
  • Peer Reviewed / Open Access
• [Journal Article] Local Chromatin Motion and Transcription. (2020)
  • Author(s): Babokhov M, Hibino K, Itoh Y, Maeshima K.
  • Journal Title: J Mol Biol. Volume: 432 Pages: 694-700
  • DOI: 10.1016/j.jmb.2019.10.018
  • Peer Reviewed
• [Journal Article] Restored interlaced volumetric imaging increases image quality and scanning speed during intravital imaging in living mice. (2020)
  • Author(s): Sogabe M, Ohzeki M, Fujimoto K, Sehara-Fujisawa A and Nishimura S.
  • Journal Title: Journal of Biophotonics Volume: 13 Issue: 5 Pages: e201960204
  • DOI: 10.1002/jbio.201960204
  • Peer Reviewed / Open Access
• [Journal Article] A new era of long-read sequencing for cancer genomics (2020)
  • Author(s): Yoshitaka Sakamoto, Sarun Sereewattanawoot, Ayako Suzuki
  • Journal Title: Journal of Human Genetics Volume: 65 Pages: 3-10
  • DOI: 10.1038/s10038-019-0658-5
  • Peer Reviewed / Open Access
• [Journal Article] Visualization tools for human structural variations identified by whole-genome sequencing (2020)
  • Author(s): Yokoyama, T. T. & Kasahara, M.
  • Journal Title: Journal of Human Genetics Volume: 65 Pages: 49-60
  • DOI: 10.1038/s10038-019-0687-0
  • Peer Reviewed / Open Access
• [Journal Article] Recent advances in the detection of base modifications using the Nanopore sequencer (2020)
  • Author(s): Liu Xu, Masahide Seki
  • Journal Title: Journal of Human Genetics Volume: 65 Pages: 25-33
  • DOI: 10.1038/s10038-019-0679-0
  • Peer Reviewed / Open Access
• [Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145 : H28 (2020)
  • Author(s): Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Pierard, Shuji Yoshino, Keiko Kimata, Junko Isobe, Kazuko Seto, Yoshiki Etoh, Hiroshi Narimatsu, Shioko Saito, Jun Yatsuyanagi, Kenichi Lee, Sunao Iyoda, Makoto Ohnishi, Tadasuke Ooka, Yasuhiro Gotoh, Yoshitoshi Ogura and Tetsuya Hayashi.
  • Journal Title: Microb Genom. Volume: 6 Pages: e000323
  • DOI: 10.1099/mgen.0.000323
  • Peer Reviewed / Open Access
• [Journal Article] Diversity of Methylobacterium spp. in the Rice of the Vietnamese Mekong Delta (2020)
  • Author(s): Khoa Lai, Ngoc Thai Nguyen, Hiroki Miwa, Michiko Yasuda, Hiep Huu Nguyen, Shin Okazaki
  • Journal Title: Microbes and Environment Volume: 35 Pages: 1-5
  • DOI: 10.1264/jsme2.ME19111
  • Peer Reviewed / Open Access
• [Journal Article] Transcriptome analysis of the ammonia-oxidizing bacterium Nitrosomonas mobilis Msl reveals division of labor between aggregates and free-living cells (2020)
  • Author(s): Rino Isshiki, Hirotsugu Fujitani, Satoshi Tsuneda
  • Journal Title: Microbes and Environments Volume: 35
  • DOI: 10.1264/jsme2.ME19148
  • Peer Reviewed / Open Access
• [Journal Article] VPS13D-related disorders presenting as a pure and complicated form of hereditary spastic paraplegia. (2020)
  • Author(s): Koh K, Ishiura H, Shimazaki H, Tsutsumiuchi M, Ichinose Y, Nan H, Hamada S, Ohtsuka T, Tsuji S, Takiyama Y.
  • Journal Title: Mol Genet Genomic Med. Volume: 8 Issue: 3 Pages: e1108
  • DOI: 10.1002/mgg3.1108
  • Peer Reviewed
• [Journal Article] Endfoot regrowth for neural stem cell renewal. (2020)
  • Author(s): Tsuboi, M. and Gotoh, Y.
  • Journal Title: Nat Cell Biol. Volume: 22 Pages: 3-5
  • DOI: 10.1038/s41556-019-0448-5
  • Peer Reviewed / Open Access
• [Journal Article] The role of Mediator and Little Elongation Complex in transcription termination. (2020)
  • Author(s): Takahashi H, Ranjan A, Chen S, Suzuki H, Shibata M, Hirose T, Hirose H, Sasaki K, Abe R, Chen K, He Y, Zhang Y, Takigawa I, Tsukiyama T, Watanabe M, Fujii S, Iida M, Yamamoto J, Yamaguchi Y, Suzuki Y, Matsumoto M, Nakayama K. I, Washburn M. P, Saraf A, Florens L, Sato S, Tomomori-Sato C, Conaway R. C, Conaway J. W, Hatakeyama S.
  • Journal Title: Nat. Commun. Volume: 11 Pages: 1063
  • DOI: 10.1038/s41467-020-14849-1
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] More dynamic, more quantitative, unexpectedly intricate : advanced understanding on synaptic RNA localization in learning and memory. (2020)
  • Author(s): Roy R, Shiina N, Wang DO
  • Journal Title: Neurobiol Learn and Mem Volume: 168 Pages: 107149
  • DOI: 10.1016/j.nlm.2019.107149
  • Peer Reviewed
• [Journal Article] Short Tandem Repeat-Enriched Architectural RNAs in Nuclear Bodies : Functions and Associated Diseases (2020)
  • Author(s): Ninomiya, K. Hirose, T.
  • Journal Title: Noncoding RNA Volume: 6 Pages: 6
  • DOI: 10.3390/ncrna6010006
  • Peer Reviewed / Open Access
• [Journal Article] LGP2 virus sensor enhances apoptosis by upregulating apoptosis regulatory genes through TRBP-bound miRNAs during viral infection. (2020)
  • Author(s): Takahashi T, Nakano Y, Onomoto K, Yoneyama M, Ui-Tei K.
  • Journal Title: Nucleic Acids Res. Volume: 48 Pages: 1494-1507
  • DOI: 10.1093/nar/gkz1143
  • Peer Reviewed / Open Access
• [Journal Article] XCL1 expression correlates with CD8-positive T cells infiltration and PD-L1 expression in squamous cell carcinoma arising from mature cystic teratoma of the ovary. (2020)
  • Author(s): Tamura R, Yoshihara K, Nakaoka H, Yachida N, Yamaguchi M, Suda K, Ishiguro T, Nishino K, Ichikawa H, Homma K, Kikuchi A, Ueda Y, Takei Y, Fujiwara H, Motoyama T, Okuda S, Wakai T, Inoue I, Enomoto T.
  • Journal Title: Oncogene Volume: 39 Pages: 3541-3554
  • DOI: 10.1038/s41388-020-1237-0
  • Peer Reviewed / Open Access
• [Journal Article] Escherichia coli 08 : H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea. (2020)
  • Author(s): Ishimaru K, Sasaki M, Narimatsu H, Arimizu Y, Gotoh Y, Nakamura K, Hayashi T, Ogura Y.
  • Journal Title: Open Forum Infect Dis. Volume: 7 Pages: ofaa021
  • DOI: 10.1093/ofid/ofaa021
  • Peer Reviewed / Open Access
• [Journal Article] Chemotherapy after progression on nivolumab is essential for responders with genetic alterations of driver gene : Review of two recurrent/metastatic oral squamous cell carcinoma patients. (2020)
  • Author(s): Ogi K, Kobayashi J, Nakagaki T, Okamoto J, Koike K, Hirokawa N, Someya M, Sakamoto H, Takada K, Tokino T, Sasaki Y, Hiratsuka H, Miyazaki A.
  • Journal Title: Oral Oncol. Volume: 102 Pages: 104509
  • DOI: 10.1016/j.oraloncology.2019.104509
  • Peer Reviewed
• [Journal Article] The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica). (2020)
  • Author(s): Shirasawa K, Yakushiji H, Nishimura R, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S
  • Journal Title: Plant J
  • DOI: 10.1111/tpj.14703
  • Peer Reviewed / Open Access
• [Journal Article] RNA-binding motifs of hnRNP K are critical for induction of antibody diversification by activation-induced cytidine deaminase (2020)
  • Author(s): Ziwei Yina, Maki Kobayashi, Wenjun Hu, Koichi, Higashi, Nasim A. Begum, Ken Kurokawa and Tasuku Honjo
  • Journal Title: PNAS USA Volume: 117 Pages: 11624-11635
  • DOI: 10.1073/pnas.1921115117
  • Peer Reviewed
• [Journal Article] Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of non-classic domestication (2020)
  • Author(s): Hideo Matsumura, Min-Chien Hsiao, Ya-Ping Lin, Atsushi Toyoda, Naoki Taniai4 Kazuhiko Tarora, Naoya Urasaki, Shashi S. Anand, Narinder P. S. Dhillon, Roland Schafleitner, Cheng-Ruei Lee
  • Journal Title: Proceedings of the National Academy of Science USA Volume: 117
  • DOI: 10.1073/pnas.1921016117
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] A robust model for quantitative prediction of the silencing efficacy of wild-type and A-to-I edited miRNAs. (2020)
  • Author(s): Tian S, Terai G, Kobayashi Y, Kimura Y, Abe H, Asai K, Ui-Tei K.
  • Journal Title: RNA Biology Volume: 17 Pages: 264-280
  • DOI: 10.1080/15476286.2019.1678364
  • Peer Reviewed / Open Access
• [Journal Article] Role of the imprinted allele of the Cdknlc gene in mouse neocortical development. (2020)
  • Author(s): Imaizumi, Y., Furutachi, S., Watanabe, T., Miya, H., Kawaguchi, D., Gotoh, Y.
  • Journal Title: Sci. Rep. Volume: 10 Pages: 1884
  • DOI: 10.1038/s41598-020-58629-9
  • Peer Reviewed / Open Access
• [Journal Article] Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes (2020)
  • Author(s): Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
  • Journal Title: Scientific Reports Volume: 10 Pages: 37
  • DOI: 10.1038/s41598-019-56881-2
  • Peer Reviewed / Open Access
• [Journal Article] Modeling of early neural development in vitro by direct neurosphere formation culture of chimpanzee induced pluripotent stem cells (2020)
  • Author(s): Ryunosuke Kitajima, Risako Nakai, Takuya Imamura, Tomonori Kameda, Daiki Kozuka, Hirohisa Hirai, Haruka Ito, Hiroo Imai, Masanori Imamura
  • Journal Title: Stem Cell Research Volume: 44 Pages: 101749
  • DOI: 10.1016/j.scr.2020.101749
  • Peer Reviewed / Open Access
• [Journal Article] Whole-genome sequencing and comparative transcriptome analysis of Bombyx mori nucleopolyhedrovirus La strain (2020)
  • Author(s): Fujimoto S, Kawamoto M, Shoji K, Suzuki Y, Katsuma S, Iwanaga M
  • Journal Title: Virus Genes Volume: 56 Pages: 249-259
  • DOI: 10.1007/s11262-019-01727-2
  • Peer Reviewed
• [Journal Article] What is the switch for coupling transcription and splicing? RNA Polymerase Ⅱ C-terminal domain phosphorylation, phase separation and beyond. (2020)
  • Author(s): Hiroshi Maita, Shinichi Nakagawa
  • Journal Title: Wiley Interdiscip Rev RNA. Volume: 11 Pages: e1574
  • DOI: 10.1002/wrna.1574
  • Peer Reviewed
• [Journal Article] Dynamics of kinetochore structure and its regulations during mitotic progression. (2020)
  • Author(s): Masatoshi Hara, and Tatsuo Fukagawa
  • Journal Title: Cellular and Molecular Life Sciences
  • DOI: 10.1007/s00018-020-03472-4
  • Peer Reviewed
• [Journal Article] キンギョの多様な表現型と全ゲノム重複 : 疾患モデル動物としての展開 (2020)
  • Author(s): 大森 義裕
  • Journal Title: 体の科学
• [Journal Article] キンギョの遺伝子は普通の魚の約2倍!-キンギョが様々な形や色を持つ理由- (2020)
  • Author(s): 大森 義裕
  • Journal Title: きんぎょ生活 Volume: 6
• [Journal Article] 双翅目昆虫の交尾体位と生殖器形態の共進化の謎に迫る (2020)
  • Author(s): 稲富桃子, Shin Dungsun, Lai Yi-Ting, 松本竜実, 松野健治
  • Journal Title: 昆虫と自然 Volume: 55 Pages: 23-26
• [Journal Article] 性染色体獲得のジレンマー性染色体は進化の袋小路か? (2020)
  • Author(s): 野澤昌文
  • Journal Title: 日本の科学者
• [Journal Article] Cooperation of Spaln and Prrn5 for construction of gene-structure-aware multiple sequence alignment (2020)
  • Author(s): Gotóh, O.
  • Journal Title: Methods in Molecular Biology
• [Journal Article] The Story of Helicobacter pylori : Depicting Human Migrations from the Phylogeography. (2019)
  • Author(s): Waskito LA, Yamaoka Y.
  • Journal Title: Adv Exp Med Biol. Volume: 1149 Pages: 1-16
  • DOI: 10.1007/5584_2019_356
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Genome-wide association study revealed novel loci which aggravate asymptomatic hyperuricaemia into gout. (2019)
  • Author(s): Kawamura Y, Nakaoka H, Nakayama A, Okada Y, Yamamoto K, Higashino T, Sakiyama M, Shimizu T, Ooyama H, Ooyama K, Nagase M, Hidaka Y, Shirahama Y, Hosomichi K, Nishida Y, Shimoshikiryo I, Hishida A, Katsuura-Kamano S, Shimizu S, Kawaguchi M, Uemura H, Ibusuki R, Hara M, Naito M, Takao M, Nakajima M, Iwasawa S, Nakashima H, Ohnaka K, M, Hosoya T, Ichida K, Inoue I, Shinomiya N, Matsuo H, et al.
  • Journal Title: Ann Rheum Dis. Volume: 78 Pages: 1430-1437
  • DOI: 10.1136/annrheumdis-2019-215521
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Hedgehog-related genes regulate reactivation of quiescent neural progenitors in Caenorhabditis elegans. (2019)
  • Author(s): Kume M, Chiyoda H, Kontani K, Katada T, Fukuyama M
  • Journal Title: Biochem Biophys Res Commun Volume: 520 Pages: 532-537
  • DOI: 10.1016/j.bbrc.2019.10.045
  • Peer Reviewed
• [Journal Article] Discovering novel mutation signatures by latent Dirichlet allocation with variational Bayes inference (2019)
  • Author(s): Taro Matsutani, Yuki Ueno, Tsukasa Fukunaga, Michiaki Hamada
  • Journal Title: Bioinformatics Volume: 35 Issue: 22 Pages: 4543-4552
  • DOI: 10.1093/bioinformatics/btz266
  • Peer Reviewed
• [Journal Article] FuncTree2 : an interactive radial tree for functional hierarchies and omics data visualization (2019)
  • Author(s): Youssef Darzi, Yuta Yamate, Takuji Yamada
  • Journal Title: Bioinformatics Volume: 35 Pages: 4519-4521
  • DOI: 10.1093/bioinformatics/btz245
  • Peer Reviewed / Open Access
• [Journal Article] MoMI-G : Modular multi-scale integrated genome graph browser. (2019)
  • Author(s): Yokoyama, T. T., Sakamoto, Y., Seki, M., Suzuki, Y. & Kasahara, M.
  • Journal Title: BMC Bioinformatics Volume: 20 Pages: 548
  • DOI: 10.1186/s12859-019-3145-2
  • Peer Reviewed / Open Access
• [Journal Article] Comparative study between Helicobacter pylori and host human genetics in the Dominican Republic. (2019)
  • Author(s): Ono T, Cruz M, Jiménez Abreu JA, Nagashima H, Subsomwong P, Hosking C, Shiota S, Suzuki R, Yamaoka Y.
  • Journal Title: BMC Evol Biol. Volume: 19 Issue: 1 Pages: 197
  • DOI: 10.1186/s12862-019-1526-9
  • Peer Reviewed / Open Access
• [Journal Article] Pathogenesis of multiple pancreatic cancers involves multicentric carcinogenesis and intrapancreatic metastasis. (2019)
  • Author(s): Fujita Y, Matsuda S, Sasaki Y, Masugi Y, Kitago M, Yagi H, Abe Y, Shinoda M, Tokino T, Sakamoto M, Kitagawa Y.
  • Journal Title: Cancer Sci Volume: 111 Pages: 739-748
  • DOI: 10.1111/cas.14268
  • Peer Reviewed / Open Access
• [Journal Article] Significant epitranscriptomes in heterogeneous cancer. (2019)
  • Author(s): Konno, M., Taniguchi, M., Ishii, H.
  • Journal Title: Cancer Sci. Volume: 110 Pages: 2318-2327
  • DOI: 10.1111/cas.14095
  • Peer Reviewed / Open Access
• [Journal Article] Western-Type Helicobacter pylori CagA are the Most Frequent Type in Mongolian Patients. (2019)
  • Author(s): Tserentogtokh T, Gantuya B, Subsomwong P, Oyuntsetseg K, Bolor D, Erdene-Ochir Y, Azzaya D, Davaadorj D, Uchida T, Matsuhisa T, Yamaoka Y.
  • Journal Title: Cancers (Basel) Volume: 11 Pages: E725
  • DOI: 10.3390/cancers11050725
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Gastric Microbiota in Helicobacter pylori-Negative and -Positive Gastritis Among High Incidence of Gastric Cancer Area. (2019)
  • Author(s): Gantuya B, El-Serag HB, Matsumoto T, Ajami NJ, Oyuntsetseg K, Azzaya D, Uchida T, Yamaoka Y.
  • Journal Title: Cancers (Basel) Volume: 11 Pages: E504
  • DOI: 10.3390/cancers11040504
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Metalloprotease-dependent attenuation of BMP signaling restricts cardiac neural crest cell fate. (2019)
  • Author(s): Arai H, Sato F, Yamamoto T, Woltjen K, Kiyonari H, Yoshimoto Y, Shukunami C, Akiyama H, Kist R, Sehara-Fujisawan A.
  • Journal Title: Cell Reports Volume: 29 Pages: 603-616
  • DOI: 10.1016/j.celrep.2019.09.019
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Biosynthetic Short Neuropeptides : A Rational Theory Based on Experimental Results for the Missing Pain-Relief Opioid Endomorphin Precursor Gene (2019)
  • Author(s): Matsushima, A., Sese, J., & Koyanagi, K. O.
  • Journal Title: ChemBioChem Volume: 20 Pages: 2054-2058
  • DOI: 10.1002/cbic.201900317
  • Peer Reviewed
• [Journal Article] The mimetic wing pattern of Papilio polytes butterflies is regulated by a doublesex-orchestrated gene network (2019)
  • Author(s): Iijima T, Yoda S, Fujiwara H
  • Journal Title: Commun Biol. Volume: 2 Pages: 257
  • DOI: 10.1038/s42003-019-0510-7
  • Peer Reviewed / Open Access
• [Journal Article] Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi. (2019)
  • Author(s): Sira Sriswasdi, Masako Takashima, Ri-ichiroh Manabe, Moriya Ohkuma, and Wataru Iwasaki.
  • Journal Title: Communications Biology Volume: 2 Pages: 263
  • DOI: 10.1038/s42003-019-0515-2
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism. (2019)
  • Author(s): Yoshida, S., Kim, S., Wafula, E. K., Tanskanen, J., Kim, Y. -M., Honaas, L., et al.
  • Journal Title: Curr. Biol. Volume: 29 Pages: 3041-3052
  • DOI: 10.1016/j.cub.2019.07.086
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Diverse gene regulatory mechanisms mediated by Polycomb group proteins during neural development (2019)
  • Author(s): Tsuboi, M., Hirabayashi, Y. and Gotoh, Y.
  • Journal Title: Curr. Opin. Neurobiol. Volume: 59 Pages: 164-173
  • DOI: 10.1016/j.conb.2019.07.003
  • Peer Reviewed
• [Journal Article] A SNP in a steroidogenic enzyme is associated with phenotypic sex in Seriola fishes. (2019)
  • Author(s): Koyama K., M. Nakamoto, K. Morishima, R. Yamashita, T. Yamashita, K. Sasaki, Y. Kuruma, N. Mizuno, M. Suzuki, Y. Okada, R. Ieda, T. Uchino, S. Tasumi, S. Hosoya, S. Uno, J. Koyama, A. Toyoda, K. Kikuchi, T. Sakamoto
  • Journal Title: Current Biol Volume: 29 Pages: 1901-1909
  • DOI: 10.1016/j.cub.2019.04.069
  • Peer Reviewed
• [Journal Article] Lack of whey acidic protein (WAP) four-disulfide core domain protease inhibitor 2 (WFDC2) causes neonatal death from respiratory failure in mice (2019)
  • Author(s): Kuniko Nakajima, Michio Ono, Uroš Radović, Selma Dizdarević, Shin-ichi Tomizawa, Kazushige Kuroha, Go Naganatsu, Ikue Hoshi, Risa Matsunaga, Takayuki Shirakawa, Takeyuki Kurosawa, Yasunari Miyazaki, Masahide Seki, Yutaka Suzuki, Haruhiko Koseki, Masataka Nakamura, Toshio Suda, Kazuyuki Ohbo
  • Journal Title: Disease Models & Mechanisms Volume: 12 Pages: dmm.040139
  • DOI: 10.1242/dmm.040139
  • Peer Reviewed / Open Access
• [Journal Article] Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes. (2019)
  • Author(s): Sato MP, Ogura Y, Nakamura K, Nishida R, Gotoh Y, Hayashi M, Hisatsune J, Sugai M, Takehiko I, Hayashi T.
  • Journal Title: DNA Res. Volume: 26 Pages: 391-398
  • DOI: 10.1093/dnares/dsz017
  • Peer Reviewed / Open Access
• [Journal Article] The histone modification H3 lysine 27 tri-methylation has conserved gene regulatory roles in the triplicated genome of Brassica rapa L. (2019)
  • Author(s): Akter A, Takahashi S, Deng W, Shea DJ, Itabashi E, Shimizu M, Miyaji N, Osabe K, Nishida N, Suzuki Y, Helliwell CA, Seki M, Peacock WJ, Dennis ES, Fujimoto R.
  • Journal Title: DNA Research Volume: 26 Pages: 433-443
  • DOI: 10.1093/dnares/dsz021
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization. (2019)
  • Author(s): Dudin, O., A. Ondracka, X. Grau-Bove, A. A. Haraldsen, A. Toyoda, H. Suga, J. Brate and I. Ruiz-Trillo
  • Journal Title: Elife Volume: 8 Pages: e49801
  • DOI: 10.7554/eLife.49801
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Masc-induced dosage compensation in silkworm cultured cells (2019)
  • Author(s): Katsuma S, Shoji K, Sugano Y, Suzuki Y, Kiuchi T
  • Journal Title: FEBS Open Bio Volume: 9 Pages: 1573-1579
  • DOI: 10.1002/2211-5463.12698
  • Peer Reviewed / Open Access
• [Journal Article] Genomic Features of Rickettsia heilongjiangensis Revealed by Intraspecies Comparison and Detailed Comparison With Rickettsia japonica. (2019)
  • Author(s): Kasama K, Fujita H, Yamamoto S, Ooka T, Gotoh Y, Ogura Y, Ando S, Hayashi T.
  • Journal Title: Front. Microbiol. Volume: 10
  • DOI: 10.3389/fmicb.2019.02787
  • Peer Reviewed / Open Access
• [Journal Article] Initial Trials With Susceptibility-Based and Empiric Anti-H. pylori Therapies in Mongolia. (2019)
  • Author(s): Byambajav TO, Bira N, Choijamts G, Davaadorj D, Gantuya B, Sarantuya T, Sarantuya G, Enkhtsetseg A, Erdenetsogt D, Battulga A, Tserentogtokh T, Matsuhisa T, Yamaoka Y, Oyuntsetseg K.
  • Journal Title: Front Pharmacol. Volume: 10 Pages: 394
  • DOI: 10.3389/fphar.2019.00394
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Streptococcus pneumoniae evades host cell phagocytosis and limits host mortality through its cell wall anchoring protein PfbA. (2019)
  • Author(s): Yamaguchi M., Hirose Y., Takemura M., Ono M., Sumitomo T., Nakata M., Terao Y., Kawabata S.
  • Journal Title: Front. Cell. Infect. Microbiol. Volume: 9 Pages: 301
  • DOI: 10.3389/fcimb.2019.00301
  • Peer Reviewed / Open Access
• [Journal Article] LncRRIsearch : a web server for IncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data (2019)
  • Author(s): Tsukasa Fukunaga, Junichi Iwakiri, Yukiteru Ono, Michiaki Hamada
  • Journal Title: Frontiers in Genetics Volume: 10 Pages: 462
  • DOI: 10.3389/fgene.2019.00462
  • Peer Reviewed / Open Access
• [Journal Article] Haustorium Inducing Factors for Parasitic Orobanchaceae. (2019)
  • Author(s): Goyet, V., Wada, S., Cui, S., Wakatake, T., Shirasu, K., Montiel, G., Simier, P. and Yoshida S.
  • Journal Title: Frontiers Plant Sci. Volume: 10 Pages: 1056
  • DOI: 10.3389/fpls.2019.01056
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] A carrier protein is essential for the action of silver nanoparticles in an animal experiment (2019)
  • Author(s): Masami Ishido
  • Journal Title: Fund. Toxicol Sci Volume: 6 Pages: 277-279
  • DOI: 10.2131/fts.6.277
  • Peer Reviewed / Open Access
• [Journal Article] Plagl regulates neuronal gene expression and neuronal differentiation of neocortical neural progenitor cells (2019)
  • Author(s): Hiroshi Sakai, Yuki Fujii, Naohiro Kuwayama, Keita Kawaji, Yukiko Gotoh, and Yusuke Kishi
  • Journal Title: Genes to Cells Volume: 24 Pages: 650-666
  • DOI: 10.1111/gtc.12718
  • Peer Reviewed
• [Journal Article] E and ID proteins regulate cell chirality and left-right asymmetric development in Drosophila. (2019)
  • Author(s): Ishibashi, T., Hatori, R., Maeda, R., Nakamura, M., Matsuyama, Y., and Matsuno, K.
  • Journal Title: Genes to Cells Volume: 24 Pages: 214-230
  • DOI: 10.1111/gtc.12669
  • Peer Reviewed
• [Journal Article] Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains. (2019)
  • Author(s): Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Döpfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y.
  • Journal Title: Genome Res. Volume: 29 Pages: 1495-1505
  • DOI: 10.1101/gr.249268.119
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Genome-wide mutation analysis of Helicobacter pylori after inoculation to Mongolian gerbils. (2019)
  • Author(s): Suzuki R, Satou K, Shiroma A, Shimoji M, Teruya K, Matsumoto T, Akada J, Hirano T, Yamaoka Y.
  • Journal Title: Gut Pathog Volume: 11 Pages: 45
  • DOI: 10.1186/s13099-019-0326-5
  • Peer Reviewed / Open Access
• [Journal Article] Changes of tight junction and interleukin-8 expression using a human gastroid monolayer model of Helicobacter pylori infection. (2019)
  • Author(s): Uotani T, Murakami K, Uchida T, Tanaka S, Nagashima H, Zeng XL, Akada J, Estes MK, Graham DY, Yamaoka Y.
  • Journal Title: Helicobacter Volume: 24 Pages: e12583
  • DOI: 10.1111/hel.12583
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Different mutation profiles between epithelium and stroma in endometriosis and normal endometrium (2019)
  • Author(s): Suda K, Nakaoka H, Yoshihara K, Ishiguro T, Adachi S, Kase H, Motoyama T, Inoue I, Enomoto T.
  • Journal Title: Human Reproduction Volume: 34 Pages: 1899-1905
  • DOI: 10.1093/humrep/dez155
  • Peer Reviewed
• [Journal Article] Genetic isolation by distance in the yellowfin goby populations revealed by RAD sequencing. (2019)
  • Author(s): Shotaro Hirase, Ayumi Tezuka, Atsushi J, Nagano, Kiyoshi Kikuchi, and Wataru Iwasaki.
  • Journal Title: Ichthyological Research Volume: 67 Pages: 98-104
  • DOI: 10.1007/s10228-019-00709-6
  • Peer Reviewed
• [Journal Article] Novel Sequence Type in Bacillus cereus Strains Associated with Nosocomial Infections and Bacteremia, Japan. (2019)
  • Author(s): Akamatsu R, Suzuki M, Okinaka K, Sasahara T, Yamane K, Suzuki S, Fujikura D, Furuta Y, Ohnishi N, Esaki M, Shibayama K, Higashi H.
  • Journal Title: Infect Dis. Volume: 25 Pages: 883-890
  • DOI: 10.3201/eid2505.171890
  • Peer Reviewed / Open Access
• [Journal Article] High-quality genome assembly of the silkworm, Bombyx mori. (2019)
  • Author(s): Kawamoto, M., A. Jouraku, A. Toyoda, K. Yokoi, Y. Minakuchi, S. Katsuma, A. Fujiyama, T. Kiuchi, K. Yamamoto and T. Shimada
  • Journal Title: Insect Biochem Mol Biol Volume: 107 Pages: 53-62
  • DOI: 10.1016/j.ibmb.2019.02.002
  • Peer Reviewed
• [Journal Article] Thermogemmatispora aurantia sp. nov. and Thermogemmatispora argillosa sp. nov., within the class Ktedonobacteria, and emended description of the genus Thermogemmatispora (2019)
  • Author(s): Zheng, Y., Wang, C. M., Sakai, Y., Abe, K., Yokota, A., & Yabe, S.
  • Journal Title: Int. J. Syst. Evol. Microbiol Volume: 69 Pages: 1744-1750
  • DOI: 10.1099/ijsem.0.003388
  • Peer Reviewed / Open Access
• [Journal Article] Tengunoibacter tsumagoiensis gen. nov., sp. nov., Dictyobacter kobayashii sp. nov., Dictyobacter alpinus sp. nov., and description of Dictyobacteraceae fam. nov. within the order Ktedonobacterales isolated from Tengu-no-mugimeshi, a soil-like granular mass of micro-organisms, and emended descriptions of the genera Ktedonobacter and Dictyobacter (2019)
  • Author(s): Wang, C. M., Zheng, Y., Sakai, Y., Toyoda, A., Minakuchi, Y., Abe, K., Yokota, A. & Yabe, S
  • Journal Title: Int. J. Syst. Evol. Microbiol Volume: 69 Pages: 1910-1918
  • DOI: 10.1099/ijsem.0.003396
  • Peer Reviewed / Open Access
• [Journal Article] A Next-Generation Sequencing-Based Approach to Identify Genetic Determinants of Antibiotic Resistance in Cambodian Helicobacter pylori Clinical Isolates. (2019)
  • Author(s): Tuan VP, Narith D, Tshibangu-Kabamba E, Dung HDQ, Viet PT, Sokomoth S, Binh TT, Sokhem S, Tri TD, Ngov S, Tung PH, Thuan NPM, Truc TC, Phuc BH, Matsumoto T, Fauzia KA, Akada J, Trang TTH, Yamaoka Y.
  • Journal Title: J Clin Med Volume: 8 Issue: 6 Pages: E858
  • DOI: 10.3390/jcm8060858
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Peroxisomes control mitochondrial dynamics and the mitochondrion-dependent pathway of apoptosis (2019)
  • Author(s): Tanaka H., Okazaki T., Aoyama S., Yokota M., Koike M., Okada Y., Fujiki Y. and Gotoh Y.
  • Journal Title: J. Cell Sci. Volume: 132 Pages: jcs224766
  • DOI: 10.1242/jcs.224766
  • Peer Reviewed / Open Access
• [Journal Article] CDK1-mediated CENP-C phosphorylation modulates CENP-A binding and mitotic kinetochore localization. (2019)
  • Author(s): Reito Watanabe, Masatoshi Hara, Ei-ichi Okumura, Solène Hervé, Daniele Fachinetti, Mariko Ariyoshi, and Tatsuo Fukagawa
  • Journal Title: Journal of Cell Biology Volume: 218 Pages: 4042-4062
  • DOI: 10.1083/jcb.201907006
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Assessment of Polygala paniculata (Polygalaceae) characteristics for evolutionary studies of legume-rhizobia symbiosis. (2019)
  • Author(s): Yuji Tokumoto, Kayo Hashimoto, Takashi Soyano, Seishiro Aoki, Wataru Iwasaki, Mai Fukuhara, Tomomi Nakagawa, Kazuhiko Saeki, Jun Yokoyama, Hironori Fujita, and Masayoshi Kawaguchi.
  • Journal Title: Journal of Plant Research Volume: 133 Pages: 109-122
  • DOI: 10.1007/s10265-019-01159-x
  • Peer Reviewed
• [Journal Article] Characterization of a novel Helicobacter pylori East Asian-type CagA ELISA for detecting patients infected with various cagA genotypes. (2019)
  • Author(s): Doohan D, Miftahussurur M, Matsuo Y, Kido Y, Akada J, Matsuhisa T, Yee TT, Htet K, Aftab H, Vilaichone RK, Mahachai V, Ratanachu-Ek T, Tshering L, Waskito LA, Fauzia KA, Uchida T, Syam AF, Rezkitha YAA, Yamaoka Y.
  • Journal Title: Med Microbiol Immunol Volume: 209 Pages: 29-40
  • DOI: 10.1007/s00430-019-00634-5
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] O-antigen biosynthesis gene clusters of Escherichia albertii : their diversity and similarity to Escherichia coli gene clusters and the development of an O-genotyping method. (2019)
  • Author(s): Ooka T, Seto K, Ogura Y, Nakamura K, Iguchi A, Gotoh Y, Honda M, Etoh Y, Ikeda T, Sugitani W, Konno T, Kawano K, Imuta N, Yoshiie K, Hara-Kudo Y, Murakami K, Hayashi T, Nishi J.
  • Journal Title: Microb Genom. Volume: 5
  • DOI: 10.1099/mgen.0.000314
  • Peer Reviewed / Open Access
• [Journal Article] The earth is small for "leviathans" : long distance dispersal of giant viruses across aquatic environments (2019)
  • Author(s): Li Y., Endo H., Gotoh Y., Watai H., Ogawa N., Blanc-Mathieu R., Yoshida T., Ogata H.
  • Journal Title: Microbes Environ. Volume: 34 Pages: 334-339
  • DOI: 10.1264/jsme2.ME19037
  • Peer Reviewed / Open Access
• [Journal Article] Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline : BactSNP (2019)
  • Author(s): Yoshimura D, Kajitani R, Gotoh Y, Katahira K, Okuno M, Ogura Y, Hayashi T, Itoh T
  • Journal Title: Microbial genomics Volume: 5 Pages: e000261
  • DOI: 10.1099/mgen.0.000261
  • Peer Reviewed / Open Access
• [Journal Article] Draft Genome Sequences of Enterococcus faecalis Strains Isolated from Healthy Japanese Individuals. (2019)
  • Author(s): Tanaka K, Watabe T, Kato K, Tsukimi T, Sato MP, Odamaki T, Tomita M, Fukuda S.
  • Journal Title: Microbiol Resour Announc. Volume: 8 Pages: e00832-19
  • DOI: 10.1128/MRA.00832-19
  • Peer Reviewed / Open Access
• [Journal Article] Draft Genome Sequence of Acidovorax sp. Strain NB1, Isolated from a Nitrite-Oxidizing Enrichment Culture (2019)
  • Author(s): Hiroto Ide, Kento Ishii, Hirotsugu Fujitani, Satoshi Tsuneda
  • Journal Title: Microbiology Resource Announcements
  • DOI: 10.1128/MRA.00547-19
  • Peer Reviewed / Open Access
• [Journal Article] An Optimized Metabarcoding Method for Mimiviridae (2019)
  • Author(s): Prodinger F, Endo H, Gotoh Y, Li Y, Morimoto D, Omae K, Tominaga K, Blanc-Mathieu R, Takano Y, Hayashi T, Nagasaki K, Yoshida T, Ogata H.
  • Journal Title: Microorganisms Volume: 8 Pages: E506
  • DOI: 10.3390/microorganisms8040506
  • Peer Reviewed / Open Access
• [Journal Article] A fast Likelihood method to reconstruct and visualize ancestral scenarios. (2019)
  • Author(s): Sohta A Ishikawa, Anna Zhukova, Wataru Iwasaki, and Olivier Gascuel.
  • Journal Title: Molecular Biology and Evolution Volume: 36 Pages: 2069-2085
  • DOI: 10.1093/molbev/msz131
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions. (2019)
  • Author(s): Kajitani, R., D. Yoshimura, M. Okuno, Y. Minakuchi, H. Kagoshima, A. Fujiyama, K. Kubokawa, Y. Kohara, A. Toyoda and T. Itoh
  • Journal Title: Nat Commun Volume: 10 Issue: 1 Pages: 1702
  • DOI: 10.1038/s41467-019-09575-2
  • Peer Reviewed / Open Access
• [Journal Article] Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease. (2019)
  • Author(s): Ishiura H, Shibata S, Yoshimura J, Suzuki Y, Qu W, Doi K, Almansour MA, Kikuchi JK, Taira M, Mitsui J, Takahashi Y, Ichikawa Y, Mano T, Iwata A, Harigaya Y, Matsukawa MK, Matsukawa T, Tanaka M, Shirota Y, Ohtomo R, Kowa H, Date H, Mitsue A, Hatsuta H, Morimoto S, Murayama S, Shiio Y, Saito Y, Mitsutake A, Kawai M, Sasaki T, Sugiyama Y, Hamada M, Ohtomo G, Terao Y, Morishita S, Tsuji S, et al.
  • Journal Title: Nat Genet. Volume: 51 Issue: 8 Pages: 1222-1232
  • DOI: 10.1038/s41588-019-0458-z
  • Peer Reviewed / Int'l Joint Research
• [Journal Article] Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer. (2019)
  • Author(s): Yachida, S., S. Mizutani, H. Shiroma, S. Shiba, T. Nakajima, T. Sakamoto, H. Watanabe, K. Masuda, Y. Nishimoto, M. Kubo, F. Hosoda, H. Rokutan, M. Matsumoto, H. Takamaru, M. Yamada, T. Matsuda, M. Iwasaki, T. Yamaji, T. Yachida, T. Soga, K. Kurokawa, A. Toyoda, Y. Ogura, T. Hayashi, M. Hatakeyama, H. Nakagama, Y. Saito, S. Fukuda, T. Shibata and T. Yamada
  • Journal Title: Nat Med Volume: 25 Issue: 6 Pages: 968-976
  • DOI: 10.1038/s41591-019-0458-7
  • Peer Reviewed / Open Access
• [Journal Article] Distinct methylation levels of mature microRNAs in gastrointestinal cancers. (2019)
  • Author(s): Konno, M., Koseki, J., Asai, A., Yamagata, A., Shimamura, T., Motooka, D., Okuzaki, D., Kawamoto, K., Nishida, N., Mizushima, T., Eguchi, H., Takiguchi, S., Satoh, T., Mimori, K., Ochiya, T., Doki, Y., Ofusa, K., Mori, M., Ishii, H.
  • Journal Title: Nature Commun. Volume: 10 Pages: 3888
  • DOI: 10.1038/s41467-019-11826-1
  • Peer Reviewed / Open Access
• [Journal Article] Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation (2019)
  • Author(s): Andrew Maltez Thomas, Paolo Manghi, Francesco Asnicar, Edoardo Pasolli, Federica Armanini, Moreno Zolfo, Francesco Beghini, Serena Manara, Nicolai Karcher, Chiara Pozzi, Sara Gandini, Davide Serrano, Sonia Tarallo, Antonio Francavilla, Gaetano Gallo, Mario Trompetto, Giulio Ferrero, Sayaka Mizutani, Hirotsugu Shiroma, Tatsuhiro Shibata, Shinichi Yachida, Takuji Yamada, Nicola Segata, et al.
  • Journal Title: Nature Madicine Volume: 25 Pages: 667-678
  • DOI: 10.1038/s41591-019-0663-4
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer (2019)
  • Author(s): Jakob Wirbel, Paul Theodor Pyl, Ece Kartal, Konrad Zych, Alireza Kashani, Alessio Milanese, Jonas S Fleck, Anita Y Voigt, Albert Palleja, Ruby Ponnudurai, Shinichi Sunagawa, Luis Pedro Coelho, Petra Schrotz-King, Emily Vogtmann, Nina Habermann, Emma Nimeus, Andrew M Thomas, Paolo Manghi, Sara Gandini, Davide Serrano, Sayaka Mizutani, Hirotsugu Shiroma, Georg Zeller, et al.
  • Journal Title: Nature Madicine Volume: 25 Pages: 679-689
  • DOI: 10.1038/s41591-019-0406-6
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Auxin-mediated rapid degradation of target proteins in hippocampal neurons (2019)
  • Author(s): Nakano R, Ihara N, Morikawa S, Nakashima A, Kanemaki MT, Ikegaya Y, and Takeuchi H.
  • Journal Title: neuroreport Volume: 30 Pages: 908-913
  • DOI: 10.1097/WNR.0000000000001299
  • Peer Reviewed
• [Journal Article] Translation-dependent unwinding of stem-loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs. (2019)
  • Author(s): Mino, T., Iwai, N., Endo, M., Inoue, K., Akaki, K., Hia, F., Uehata, T., Emura, T., Hidaka, K., Suzuki, Y., Standley, D. M., Okada-Hatakeyama, M., Ohno, S., Sugiyama, H., Yamashita, A., Takeuchi, O.
  • Journal Title: Nucleic Acids Research Volume: 47 Pages: 8838-8859
  • DOI: 10.1093/nar/gkz628
  • Peer Reviewed / Open Access
• [Journal Article] Genome Sequencing Verifies Relapsed Infection of Helicobacter cinaedi. (2019)
  • Author(s): Sawada O, Gotoh Y, Taniguchi T, Furukawa S, Yoshimura D, Sasaki S, Shida H, Kusunoki Y, Yamamura T, Furuya K, Itoh T, Horita T, Hayashi T, Misawa N.
  • Journal Title: Open Forum Infect Dis. Volume: 6 Pages: ofz200
  • DOI: 10.1093/ofid/ofz200
  • Peer Reviewed / Open Access
• [Journal Article] SIMON : Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing. (2019)
  • Author(s): Vial-Pradel S., Hasegawa Y., Nakagawa A., Miyaki S., Machida Y., Kojima S., *Machida C., *Takahashi H.
  • Journal Title: Plant Biotechnol. Volume: 36 Pages: 213-222
  • DOI: 10.5511/plantbiotechnology.19.0822a
  • Peer Reviewed
• [Journal Article] High mesophy11 conductance in the high-yielding rice cultivar Takanari quantified with the combined gas exchange and chlorophy11 fluorescence measurements under free-air CO2 enrichmen (2019)
  • Author(s): Ikawa, H., Sakai, H., Chen, C. P., Soong, T. H., Yonemura, S., Taniguchi, Y., Yoshimoto, M., Tokida, Zhang, G., T., Kuwagata, et al.
  • Journal Title: Plant Production Science Volume: 22 Pages: 395-406
  • DOI: 10.1080/1343943X.2019.1626253
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Transcriptional regulatory divergence underpinning species-specific learned vocalization in songbirds. (2019)
  • Author(s): Wang H, Sawai A, Toji N, Sugioka R, Shibata Y, Suzuki Y, Ji Y, Hayase S, Akama S, Sese J, Wada K.
  • Journal Title: PLoS Biology Volume: 17 Pages: e3000476
  • DOI: 10.1371/journal.pbio.3000476
  • Peer Reviewed / Open Access
• [Journal Article] DIpartite : A tool for detecting bipartite motifs by considering base interdependencies (2019)
  • Author(s): Vahed M, Ishihara JI, Takahashi H
  • Journal Title: PLoS One Volume: 14 Issue: 8 Pages: e0220207
  • DOI: 10.1371/journal.pone.0220207
  • Peer Reviewed / Open Access
• [Journal Article] Analysis of risks of gastric cancer by gastric mucosa among Indonesian ethnic groups. (2019)
  • Author(s): Miftahussurur M, Waskito LA, Syam AF, Nusi IA, Wibawa IDN, Rezkitha YAA, Siregar G, Yulizal OK, Akil F, Uwan WB, Simanjuntak D, Waleleng JB, Saudale AMJ, Yusuf F, Maulahela H, Richardo M, Rahman A, Namara YS, Sudarmo E, Adi P, Maimunah U, Setiawan PB, Fauzia KA, Doohan D, Uchida T, Lusida MI, Yamaoka Y.
  • Journal Title: PLoS One Volume: 14 Pages: e0216670
  • DOI: 10.1371/journal.pone.0216670
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. (2019)
  • Author(s): David M. Needham, Susumu Yoshizawa, Toshiaki Hosaka, Camille Poirier, Chang Jae Choi, Elisabeth Hehenberger, Nicholas A. T. Irwin, Susanne Wilken, Cheuk-Man Yung, Charles Bachy, Rika Kurihara, Yu Nakajima, Keiichi Kojima, Tomomi Kimura-Someya, Guy Leonard, Rex R. Malmstrom, Daniel R. Mende, Daniel K. Olson, Yuki Sudo, Sebastian Sudek, Wataru Iwasaki, and Alexandra Z. Worden, et al.
  • Journal Title: Proc Nat1 Acad Sci U S A Volume: 116 Pages: 20574-20583
  • DOI: 10.1073/pnas.1907517116
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Organization of fast and slow chromatin revealed by single-nucleosome dynamics. (2019)
  • Author(s): Ashwin SS, Nozaki T, Maeshima K, Sasai M.
  • Journal Title: Proc Nat1 Acad Sci U S A. Volume: 116 Pages: 19939-19944.
  • DOI: 10.1073/pnas.1907342116
  • Peer Reviewed / Open Access
• [Journal Article] Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean. (2019)
  • Author(s): Hashima F, Suwa S, Kanda J, Ehama M, Sakuraba R, Kinouchi S, Sato M, Yamaguchi T, Saito H, Ogura Y, Hayashi T, Mori H, Kurokawa K, Suzuki S, Hamasaki K
  • Journal Title: Progrss in Oceanography Volume: 176
  • DOI: 10.1016/j.pocean.2019.05.007
  • Peer Reviewed
• [Journal Article] Proper direction of male genitalia is prerequisite for copulation in Drosophila, implying cooperative evolution between genitalia rotation and mating behavior. (2019)
  • Author(s): Inatomi, M., Shin, D., Lai, Y. -T., and Matsuno, K.
  • Journal Title: Sci. Rep. Volume: 9 Pages: 210
  • DOI: 10.1038/s41598-018-36301-7
  • Peer Reviewed / Open Access
• [Journal Article] Structured spike series specify gene expression patterns for olfactory circuit formation (2019)
  • Author(s): Nakashima A, Ihara N, Shigeta M, Kiyonari H, Ikegaya Y, and Takeuchi H†
  • Journal Title: Science Volume: 365 Pages: eaaw5030
  • DOI: 10.1126/science.aaw5030
  • Peer Reviewed
• [Journal Article] Characterization of cancer omics and drug perturbations in panels of lung cancer cells (2019)
  • Author(s): Ayako Suzuki†, Keiichi Onodera†, Ken Matsui, Masahide Seki, Hiroyasu Esumi, Tomoyoshi Soga, Sumio Sugano, Takashi Kohno, Yutaka Suzuki, Katsuya Tsuchihara (†contributed equally)
  • Journal Title: Scientific Reports Volume: 9 Pages: 19529
  • DOI: 10.1038/s41598-019-55692-9
  • Peer Reviewed / Open Access
• [Journal Article] Cells with broken left-right symmetry : roles of intrinsic cell chirality in left-right asymmetric epithelial morphogenesis. (2019)
  • Author(s): Utsunomiya, S., Sakamura, S., Sasamura, T., Ishibashi, T., Maeda, C., Inaki, M., and Matsuno K.
  • Journal Title: Symmetry Volume: 11 Pages: 505
  • DOI: 10.3390/sym11040505
  • Peer Reviewed
• [Journal Article] Graph splitting : A graph-based approach for superfamily-scale phylogenetic tree reconstruction. (2019)
  • Author(s): Motomu Matsui and Wataru Iwasaki.
  • Journal Title: Systematic Biology Volume: 69 Pages: 265-279
  • DOI: 10.1093/sysbio/syz049
  • Peer Reviewed / Open Access
• [Journal Article] Helicobacter pylori Virulence Factors Exploiting Gastric Colonization and its Pathogenicity. (2019)
  • Author(s): Ansari S, Yamaoka Y.
  • Journal Title: Toxins (Basel) Volume: 11 Pages: E677
  • DOI: 10.3390/toxins11110677
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants. (2019)
  • Author(s): Okura M, Maruyama F, Ota A, Tanaka T, Matoba Y, Osawa A, Sadaat SM, Osaki M, Toyoda A, Ogura Y, Hayashi T, Takamatsu D.
  • Journal Title: Vet Res. Volume: 50 Pages: 94
  • DOI: 10.1186/s13567-019-0708-1
  • Peer Reviewed / Open Access
• [Journal Article] 東アジアにおけるヒトの遺伝適応の痕跡を求めて (2019)
  • Author(s): 木村亮介
  • Journal Title: 日本生理人類学会誌 Volume: 24 Pages: 87-91
  • DOI: 10.20718/jjpa.24.2_87
  • Peer Reviewed / Open Access
• [Journal Article] Phylogeographic characteristics of hypervariable regions in the mitochondrial genome of a cosmopolitan, bloom-forming raphidophyte, Heterosigma akashiwo (2019)
  • Author(s): Ueki, S
  • Journal Title: Journal of Phycology Volume: 55 Issue: 4 Pages: 858-867
  • DOI: 10.1111/jpy.12868
  • Peer Reviewed / Open Access
• [Journal Article] Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut. (2019)
  • Author(s): Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.
  • Journal Title: Microbiome. Volume: 7 Issue: 1 Pages: 119
  • DOI: 10.1186/s40168-019-0737-z
  • Peer Reviewed / Open Access
• [Journal Article] Recompleting the Caenorhabditis elegans genome. (2019)
  • Author(s): Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM.
  • Journal Title: Genome Res. Volume: 29 Issue: 6
  • DOI: 10.1101/gr.244830.118
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Interspecies Comparative Analyses Reveal Distinct Carbohydrate-Responsive Systems among Drosophila Species. (2019)
  • Author(s): Kaori Watanabe, YasutetsuKanaoka, Shoko Mizutani, Hironobu Uchiyama, ShunsukeYajima, Masayoshi Watada, Tadashi Uemura, and Yukako Hattori
  • Journal Title: Cell Reports Volume: 28 Issue: 10 Pages: 2594-2607
  • DOI: 10.1016/j.celrep.2019.08.030
  • Peer Reviewed / Open Access
• [Journal Article] Evidence for sympatric speciation in a Wallacean ancient lake (2019)
  • Author(s): Nobu Sutra, Junko Kusumi, Javier Montenegro, Hirozumi Kobayashi, Shingo Fujimoto, Kawilarang W. A. Masengi, Atsushi J. Nagano, Atsushi Toyoda, Masatoshi Matsunami, Ryosuke Kimura, Kazunori Yamahira
  • Journal Title: Evolution Volume: 73 Issue: 9 Pages: 1898-1915
  • DOI: 10.1111/evo.13821
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing (2019)
  • Author(s): T. Kazama, M. Okuno, Y. Watari, S. Yanase, C. Koizuka, Y. Tsuruta, H. Sugaya, A. Toyoda, T. Itoh, N. Tsutsumi, K. Toriyama, N. Koizuka, S. Arimura
  • Journal Title: Nature Plants Volume: 5 Pages: 722-730
  • DOI: 10.1038/s41477-019-0459-z
  • Peer Reviewed / Open Access
• [Journal Article] A key metabolic gene for recurrent freshwater colonization and radiation in fishes. (2019)
  • Author(s): Asano Ishikawa, Naoki Kabeya, Koki Ikeya, Ryo Kakioka, Jennifer N. Cech, Naoki Osada, Miguel C. Leal, Jun Inoue, Manabu Kume, Atsushi Toyoda, Ayumi Tezuka, Atsushi J. Nagano, Yo Y. Yamasaki, Yuto Suzuki, Tomoyuki Kokita, Hiroshi Takahashi, Kay Lucek, David Marques, Yusuke Takehana, Kiyoshi Naruse, Catherine L. Peichel, Ole Seehausen, Goro Yoshizaki, Jun Kitano, et al.
  • Journal Title: Science Volume: 364 Issue: 6443 Pages: 886-889
  • DOI: 10.1126/science.aau5656
  • Peer Reviewed / Open Access / Int'l Joint Research
• [Journal Article] Toward repositioning Allium vegetable crops as global commodities : opportunities and challenges for future application of omics and phytomedomics platforms to crop improvement. (2019)
  • Author(s): M. Shigyo, S. Fujito, S. Sato
  • Journal Title: Acta Hortic Volume: 1251 Pages: 1-7
  • DOI: 10.17660/ActaHortic.2019.1251.1
• [Journal Article] ゲノム研究関連指針改正に関するアンケート結果報告-指針改正に現場の声を届けるために- (2019)
  • Author(s): 山﨑千里, 大橋範子, 小門穂, 加藤和人
  • Journal Title: 医療・生命と倫理・社会 Issue: 15 Pages: 23-33
  • Open Access
• [Presentation] CD69 Biology and Pathology (2020)
  • Author(s): Kimura M. Y., Koyama-Nasu, R., Mita Y., Hayashizaki, K. and Nakayama T.
  • Organizer: 11th International Symposium of IFReC, Immunology at the Forefront
  • Int'l Joint Research / Invited
• [Presentation] Epigenetic regulation of neural stem-progenitor cell fate in the developing mouse neocortex (2020)
  • Author(s): Yukiko Gotoh
  • Organizer: 2nd Neuroepigenetics & Neuroepitranscriptomics' Conference
  • Int'l Joint Research / Invited
• [Presentation] First line defense mechanisms against viral infection (2020)
  • Author(s): Yukiko Gotoh
  • Organizer: AMED International Symposium
  • Int'l Joint Research / Invited
• [Presentation] Epigenetic regulation of mononuclear phagocyte development (2020)
  • Author(s): Daisuke Kurotaki
  • Organizer: Meeting of Leukemic and Hematopoietic Stem Cells in Kumamoto
  • Int'l Joint Research / Invited
• [Presentation] Whole genome assembly in hexaploid sweetpotato and comparison with diploid wild species (2020)
  • Author(s): TRAS sweetpotato genome sequencing cnsortium (Sachiko Isobe)
  • Organizer: Plant and Animal Genome XXVIII
  • Int'l Joint Research / Invited
• [Presentation] Chromosome Organization in Living Human Cells Revealed by Single Nucleosome Imaging. (2020)
  • Author(s): Maeshima K.
  • Organizer: Telluride Workshop on Physical Genomics and Transcriptional Engineering
  • Int'l Joint Research / Invited
• [Presentation] Mechanistic insights of metronidazole resistance revealed by Next-Generation Sequencing of whole genome of Helicobacter pylori clinical isolates from the Democratic Republic of Congo (2020)
  • Author(s): Tshibangu Evariste
  • Organizer: 10th Kenya Medical Research Institute Annual Scientific and Health Conference
  • Int'l Joint Research
• [Presentation] Integration of the Panel Sequencing and In-Depth Single Cell Analyses Reveals the Clonal Evolution of Adult T Cell Leukemia Cells (2020)
  • Author(s): Yutaka Suzuki
  • Organizer: Advances in Genome Biology and Technology (AGBT)
  • Int'l Joint Research
• [Presentation] Single plasma cell transcriptome analysis in POEMS syndrome (2020)
  • Author(s): Yusuke Isshiki, Naoya Mimura, Motohiko Oshima, Kensuke Kayamori, Masahide Seki, Kiyomi Imamura, Terumi Horiuchi, Yurie Nagai, Shokichi Tsukamoto, Yusuke Takeda, Chikako Ohwada, Sonoko Misawa, Satoshi Kuwabara, Yutaka Suzuki, Emiko Sakaida, Chiaki Nakaseko, Atsushi Iwama
  • Organizer: Annual Meeting of European Hematology Association
  • Int'l Joint Research
• [Presentation] Impact of structure and property changes of aging choroid plexus on neural stem cell regulation and brain functions (2020)
  • Author(s): SAYAKO KATADA
  • Organizer: Keystone Symposia on cerebrospinal fluid
  • Int'l Joint Research
• [Presentation] Update of Platanus-allee, a de novo haplotype assembler, and its application to the organisms with highly divergent haplotypes (2020)
  • Author(s): Rei Kajitani, Miki Okuno, Hiroyuki Tanaka, Atsushi Toyoda, Takehiko Itoh
  • Organizer: Plant & animal genome conference XXVIII
  • Int'l Joint Research
• [Presentation] Whole-genome sequencing and comparative analysis of emu provides insights into sex chromosome evolution of the Palaeognathae clade (2020)
  • Author(s): Miki Okuno, Rei Kajitani, Hiroyuki Tanaka, Shuhei Mizushima, Asato Kuroiwa, Takehiko Itoh
  • Organizer: Plant & animal genome conference XXVIII
  • Int'l Joint Research
• [Presentation] genome Assembly and Characterization of Medicinal Plant Sophora Flavescens (2020)
  • Author(s): Amit Rai, Yohei Shimizu, Hideki Hirakawa, Mami Yamazaki, Kazuki Saito
  • Organizer: Plant and Animal Genome Conference XXVIII ; San Diego, USA
  • Int'l Joint Research
• [Presentation] Chromosome-level assembly of liverwort Marchantia polymorpha and updates of the genome database MarpolBase. (2020)
  • Author(s): Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Freédéric Berger
  • Organizer: Plant and Animal Genomics 2020
  • Int'l Joint Research
• [Presentation] Homeostasis through neural control of gut microbiota in Drosophila (2020)
  • Author(s): Kentaro Ishibashi, Takuro Suzuki, Naoyuki Fuse, Shoichiro Kurata
  • Organizer: The 8th Global Network Forum on Infection and Immunity
  • Int'l Joint Research
• [Presentation] 自己内在性リガンドを介したミクログリア活性化に起因するレット症候群発症機構の解明と治療法の確立 (2020)
  • Author(s): 中嶋秀行、中島欽一
  • Organizer: 2020レット症候群とMeCP2重複症候群
  • Invited
• [Presentation] Chromatin regulation during neural development (2020)
  • Author(s): Yusuke Kishi
  • Organizer: The 97th Annual meeting of Physiological Society of Japan(誌上開催)
  • Invited
• [Presentation] ゲノム規模解析で紐解く転写因子によるミエロイド細胞の分化系譜決定機構 (2020)
  • Author(s): 田村 智彦
  • Organizer: 横浜市立大学先端医科学研究センター 共同利用・共同研究拠点「マルチオミックスによる遺伝子発現制御の先端医学共同尾研究拠点」シンポジウム
  • Invited
• [Presentation] ゲノム解析技術の進展 (2020)
  • Author(s): 鈴木 穣
  • Organizer: 共同利用・共同研究拠点「マルチオミックスによる遺伝子発現制御の先端的医学共同研究拠点」シンポジウム
  • Invited
• [Presentation] 昆虫翅の起源を探る研究から害虫防除へ (2020)
  • Author(s): 新美輝幸
  • Organizer: 昆虫科学・新産業創生研究センター 第2回シンポジウム「昆虫多様性と生態の理解と応用」
  • Invited
• [Presentation] ショウジョウバエにおける性染色体の進化 (2020)
  • Author(s): 野澤 昌文
  • Organizer: 総合研究大学院大学先導科学考究
  • Invited
• [Presentation] RNAi法を用いた非モデル昆虫研究の新展開 (2020)
  • Author(s): 新美輝幸
  • Organizer: 第31回 生物学技術研究会・第42回 生理学技術研究会 研修講演
  • Invited
• [Presentation] URAT2/OAT10遺伝子の機能低下型ミスセンスSNPは血清尿酸値と痛風のリスクを共に低下させる (2020)
  • Author(s): 河村優輔、東野俊英、清水聖子、中山昌喜、大山恵子、大山博司、清水徹、川口真、高尾幹也、市田公美、四ノ宮成祥、高田龍平、松尾洋孝
  • Organizer: 第53回日本痛風・尿酸核酸学会
  • Invited
• [Presentation] Differential regulation of RNA unloading from phloem (2020)
  • Author(s): Koh Aoki, Subhankar Bera, Kohki Shimizu
  • Organizer: 第61回日本植物生理学会年会
  • Invited
• [Presentation] 病原真菌Aspergillus fumigatusの環境応答能の数理モデル化による理解の試み (2020)
  • Author(s): 高橋弘喜
  • Organizer: 第93回日本細菌学会総会
  • Invited
• [Presentation] 肺炎球菌の菌体表層タンパク質群に着目した病態形成機構の解明. (2020)
  • Author(s): 山口雅也
  • Organizer: 第93回日本細菌学会総会
  • Invited
• [Presentation] 根圏微生物叢による植物生長促進機構の理解およびその活用に向けて (2020)
  • Author(s): 晝間敬
  • Organizer: 日本植物生理学会
  • Invited
• [Presentation] カイコおよび昆虫の雄特異的形質に関与する遺伝子の単離と機能解析 (2020)
  • Author(s): 新美輝幸
  • Organizer: 令和2年度蚕糸・昆虫利用学術講演会(日本蚕糸学会第90回大会) 日本蚕糸学会賞受賞記念講演
  • Invited
• [Presentation] Chromosomal-level assembly of the pufferfish genomes provides insights into sex-chromosome evolution (2020)
  • Author(s): Kabir Ahammad
  • Organizer: 令和2年度日本水産学会春季大会
  • Invited
• [Presentation] Acceleration of leaf development in the mutants of Arabidopsis deadenylases, AtCCR4a/b (2020)
  • Author(s): Taku Tokunaka
  • Organizer: Annual Meeting of JSPP
• [Presentation] IgA腎症患者の扁桃陰窩におけるIgAレパトアと細菌叢の関連 (2020)
  • Author(s): 山口浩毅、後藤眞、山本卓, 金子佳賢、成田一衛
  • Organizer: IgA腎症研究会
• [Presentation] The nutritional basis of Drosophila associated yeasts and bacteria for larval growth (2020)
  • Author(s): Ayumi Mure
  • Organizer: Kyoto Biomolecular Mass Spectrometry Society(KBMSS)
• [Presentation] トウガラシ(Capsicum chinense)の高温期の着果率および花粉発芽率と相関のある遺伝子マーカーの作出 (2020)
  • Author(s): 山崎 彬・白澤健太・細川宗孝
  • Organizer: 園芸学会
• [Presentation] トウガラシ(Capsicum chinense)雑種第一代(F1)が持つ高温着果性と花粉発芽率の関係 (2020)
  • Author(s): 山崎 彬・細川宗孝
  • Organizer: 園芸学会
• [Presentation] トウガラシの交雑不親和性に関わるエピスタシス遺伝子座 (2020)
  • Author(s): 梅林綾香・白澤健太・安井康夫・細川宗孝
  • Organizer: 園芸学会
• [Presentation] ホウレンソウ性決定候補遺伝子の特徴付け (2020)
  • Author(s): 小野寺康之・須藤有紀・平川英樹・鈴木穣
  • Organizer: 園芸学会 令和2年度春季大会
• [Presentation] Mechanoreceptor-mediated circuit regulates cold tolerance in Caenorhabditis elegans (2020)
  • Author(s): Natsune Takagaki, Akane Ohta, Kohei Ohnishi, Akira Kawanabe, Yohei Minakuchi, Atsushi Toyoda, Yuichiro Fujiwara & Atsushi Kuhara
  • Organizer: 関西線虫勉強会
• [Presentation] Why the circadian clock is circadian : the local adaptation of circadian periods in the photoperiodic flowering of a Japanese short-day duckweed. (2020)
  • Author(s): 村中智明、小山時隆、工藤洋
  • Organizer: 生態学会
• [Presentation] Lack of whey-four disulphide core (WFDC2) protease inhibitor causes neonatal death from respiratory failure in mice (2020)
  • Author(s): Selma Dizdarevic, 中島久仁子、尾野道男、富澤信一、大保和之
  • Organizer: 第125回日本解剖学会総会・全国学術総会
• [Presentation] キャプチャーシーケンス法によるリケッチアの多様性と宿主マダニとの系統遺伝学的関係の解析 (2020)
  • Author(s): 笠間健太郎、藤田博己、山本正悟、高野愛、後藤恭宏、小椋義俊、安藤秀二、林哲也
  • Organizer: 第14回 日本ゲノム微生物学会
• [Presentation] 腸内細菌科細菌のグルタミン合成酵素遺伝子glnAの3’UTRから生成するsRNAの機能解析 (2020)
  • Author(s): 宮腰昌利、Anna Berger
  • Organizer: 第14回日本ゲノム微生物学会年会
• [Presentation] 網羅的遺伝子発現解析によって見えてきたアンモニア酸化細菌の凝集体と非凝集体の分業形態 (2020)
  • Author(s): 一色理乃, 藤谷拓嗣, 常田聡
  • Organizer: 第14回日本ゲノム微生物学会年会
• [Presentation] ER陽性乳がんで高発現している非コードRNA Eleanorsを介した転写活性化 (2020)
  • Author(s): 市川雄一、斉藤典子
  • Organizer: 第20回関東ホルモンと癌研究会
• [Presentation] 新規3‘遠位エンハンサーによる Irf8遺伝子発現及び単核貪食細胞分化の制御 (2020)
  • Author(s): 村上 紘一、佐々木 悠、西山 晃、黒滝 大翼、川瀬 航、関田 洋一、中島 秀明、木村 透、田村 智彦
  • Organizer: 第24回造血器腫瘍研究会
• [Presentation] 樹状細胞分化における三次元クロマチン高次構造動態解析 (2020)
  • Author(s): 黒滝大翼、Pedro P. Rocha、Kairong Cui、中林潤、川瀬航、原田生起、佐伯恵太、Keji Zhao、Keiko Ozato、田村智彦
  • Organizer: 第24回造血器腫瘍研究会
• [Presentation] ゲノムワイド関連解析による無症候性高尿酸血症患者からの痛風発症に関連する新規遺伝子座の同定 (2020)
  • Author(s): 松尾洋孝、河村優輔、中岡博史、中山昌喜、岡田随象、山本健、清水徹、大山博司、長瀬満夫、清水聖子、高尾幹也、中島宏、中杤昌弘、有澤孝吉、嶽崎俊郎、田中恵太郎、若井建志、久保充明、井ノ上逸朗、四ノ宮成祥
  • Organizer: 第30回日本疫学会学術集会
• [Presentation] 多様なりガンドのエンドサイトーシスに関わる分子LRP2の一塩基多型rs2544390は痛風発症と関連する : 日本人男性における痛風とrs2544390のメタ解析 (2020)
  • Author(s): 赤司藍理、中山昌喜、東野俊英、清水聖子、河村優輔、川口真、高尾幹也、高田龍平、市田公美、大山博司、四ノ宮成祥、松尾洋孝
  • Organizer: 第53回日本痛風・尿酸核酸学会
• [Presentation] イネ染色体添加系統におけるゲノム構造解析 (2020)
  • Author(s): 保坂碧, 真弓彩夏, 山口佳穂, 野々村賢一, 安井秀, 辻寛之
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] Epidermal cell-patterning genes are involved in the holdfast formation of a stem parasitic plant, Cuscuta campestris (2020)
  • Author(s): Sabrina Sultana, Daiki Fujiwara, Koh Aoki
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] Mechanosensitive channel genes of a stem parasitic plant, Cuscuta campestris, and their expression during haustorium initiation (2020)
  • Author(s): Jihwan Park, Koh Aoki
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] Plant mobile domainタンパク質による遺伝子サイレンシング機構の解析 (2020)
  • Author(s): 池田 陽子, Mathieu Olivier
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] 蒸散要求量はイネのトランスクリプトームを制御する重要な微気象要因である (2020)
  • Author(s): 桑形恒男, 石田祐宣, 羽田野(村井)麻理, 松波麻耶, 照井慎吾, 永野惇
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] 染色体レベルのゼニゴケ参照ゲノムの構築とゲノムデータベースの開発 (2020)
  • Author(s): 谷澤 靖洋, 矢倉 勝, 坂本 美佳, 望月 孝子, Montgomery, Sean A., Galik, Bence, 山岡 尚平, 西浜 竜一, 大和 勝幸, 河内 孝之, Berger, Frédéric, Liu, Chang, 中村 保一
  • Organizer: 第61回日本植物生理学会年会
• [Presentation] Population genetic structure of a Sulawesian medaka fish within a single river system (2020)
  • Author(s): Mandagi IF, Lawelle SA, Masengi KWA, Yamahira K
  • Organizer: 第67回日本生態学会大会
• [Presentation] スラウェシ島の古代湖群におけるメダカ科魚類の種分化 (2020)
  • Author(s): 山平寿智
  • Organizer: 第67回日本生態学会大会
• [Presentation] 細菌のmRNAに隠された遺伝子発現制御機能 (2020)
  • Author(s): 宮腰昌利
  • Organizer: 第93回日本細菌学会総会
• [Presentation] Comprehensive detection of insertion sequences in bacterial genomes (2020)
  • Author(s): 服部淳、吉村大、谷口愛樹、林哲也、伊藤武彦
  • Organizer: 第93回日本細菌学会総会
• [Presentation] 冬眠する哺乳類シリアンハムスターが示す低温耐性 (2020)
  • Author(s): 山口良文
  • Organizer: 第97回日本生理学会
• [Presentation] イネ染色体添加系統におけるゲノムの高次構造解析 (2020)
  • Author(s): 保坂 碧, 真弓 彩夏, 鈴木 創, 笠原 雅弘, 野々 村 賢一, 安井 秀, 辻 寛之
  • Organizer: 日本育種学会第137回講演会
• [Presentation] ホウレンソウ性決定候補遺伝子の発現パターンの解析 (2020)
  • Author(s): 須藤有紀, 長部高之, 平川 英樹, 鈴木穣, 小野寺康之
  • Organizer: 日本育種学会第137回講演会
• [Presentation] 歯状核赤核淡蒼球ルイ体萎縮症に角膜内皮障害を伴う一例 (2020)
  • Author(s): 橋本由美
  • Organizer: 日本眼科学会総会
• [Presentation] Single cell RNA analysis of plasma cells in POEMS syndrome (2020)
  • Author(s): Naoya Mimura, Yusuke Isshiki, Motohiko Oshima, Kensuke Kayamori, Masahide Seki, Kiyomi Imamura, Terumi Horiuchi4, Emiko Sakaida, Chiaki Nakaseko, Yutaka Suzuki4, Atsushi Iwama
  • Organizer: 日本骨髄腫学会
• [Presentation] Draft genome sequences of two strains of Streptococcus pneumoniae from AIPF patients (2020)
  • Author(s): 上田たかね
  • Organizer: 日本細菌学会(第93回 総会)
• [Presentation] Expression analysis of genes associated with the distribution of Na+ and Cl- in the internal leaf sheath tissues of rice (2020)
  • Author(s): Neang S., Skoulding N. S., Nakata-Kano, M., Yamauchi A., Mitsuya S.
  • Organizer: 日本作物学会
• [Presentation] ビワがんしゅ病抵抗性遺伝子(pse-c)のファインマッピング (2020)
  • Author(s): 福田伸二・文園千佳子・川口揚豊・松隈公孝・永野幸生・坂口龍之介・伊藤武彦・奥野未来・豊田敦
  • Organizer: 日本植物病理学会
• [Presentation] Rhizobium vitis VARO3-1株のブドウ根頭がんしゅ病に対する拮抗能を司るテイロシンの解析 (2020)
  • Author(s): 石井智也, 齊藤晶, 渡邉恵, 佐藤繭子, 豊岡公徳, 石濱伸明, 白須賢, 包継源, 松井英譲, 山本幹博, 一瀬勇規, 豊田和弘, 川口章, 能年義輝
  • Organizer: 日本植物病理学会大会
• [Presentation] 珪藻の進化・繁栄の謎を握る未知の藻類 : パルマ藻のゲノム解析 (2020)
  • Author(s): 桑田 晃、中村 洋路、斉藤 憲治、伴広輝、緒方博之、佐藤晋也、吉川伸哉、一宮睦雄
  • Organizer: 日本藻類学会第44回大会
• [Presentation] 新規に分離された珪質型ボリド藻Tetraparma属3種の分子系統解析 (2020)
  • Author(s): 新川裕大、山田和正、吉川伸哉、桑田 晃、一宮睦雄、佐藤晋也
  • Organizer: 日本藻類学会第44回大会
• [Presentation] 日本各地の環境試料からのIncPromA群プラスミドの収集と比較 (2020)
  • Author(s): 山本雪絵, 金子健成, 早川雅也, 森内良太, 道羅英夫, 金原和秀, 新谷政己
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] 薬剤耐性遺伝子の薬剤耐性遺伝子の伝播に寄与しうるプラスミドの収集伝播に寄与しうるプラスミドの収集 (2020)
  • Author(s): 中道孝一朗, 森光矢, 金原和秀, 新谷政己
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] グリシン誘導性small RNA GcvBによるサルモネラ増殖抑制機構の解析 (2020)
  • Author(s): 第93回日本細菌学会総会
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] 放線菌Streptomyces avermitilisのカルコフォア生産制御機構の解析 (2020)
  • Author(s): 萩谷 祥、Salvatore Cosentino、按田 瑞恵、後藤 恭宏、中村 佳司、林 哲也、岩崎 渉、上田 賢志、髙野 英晃
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] 分裂酵母の新規RNA結合タンパク質Nrp1の機能解析 (2020)
  • Author(s): 湯川格史(演者)、大石充輝、登田 隆
  • Organizer: 日本農芸化学会2020年度大会
• [Presentation] 水田雑草ウキクサにおける開花日長の局所適応 (2020)
  • Author(s): 村中智明、小山時隆、工藤洋
  • Organizer: 農業気象学会
• [Presentation] Genomic identification and characterization of sex-determining locus of Takifugu niphobles by a chromosome scale genome assembly (2020)
  • Author(s): Kabir Ahammad, Risa Ieda, Daigaku Fujikawa, Shotaro Hirase, Takashi Koyama, Atsushi Toyota, Shigehiro Kuraku Sho Hosoya, Kiyoshi Kikuchi
  • Organizer: 令和2年度日本水産学会春季大会
• [Presentation] Chromatin-level regulation of neural stem/progenitor cell fate (2019)
  • Author(s): Yukiko Gotoh
  • Organizer: 2019 The International Brain Research Organization (IBRO)
  • Int'l Joint Research / Invited
• [Presentation] Technical developments at the frontier of neuroscience (2019)
  • Author(s): Wang DO
  • Organizer: 35th Annual Scientific Meeting
  • Int'l Joint Research / Invited
• [Presentation] Epigenetic control of myeloid cell development by the transcription factor IRF8 (2019)
  • Author(s): 田村 智彦
  • Organizer: 48th International Society for Experimental Hematology Annual Meeting
  • Int'l Joint Research / Invited
• [Presentation] The role of cohesin in the central nervous system (2019)
  • Author(s): Yuki Fujita, Toshihide Yamashita
  • Organizer: 69 th Annual Meeting of Korean Association of Anatomists
  • Int'l Joint Research / Invited
• [Presentation] We are ready to 10 k microbe genomes. (2019)
  • Author(s): Yasukazu Nakamura
  • Organizer: A high-level CODATA data policy meeting, Beijing
  • Int'l Joint Research / Invited
• [Presentation] Patient-specific circulating tumor DNA monitoring using esophageal squamous cell cancer gene panel and digital PCR. (2019)
  • Author(s): Iwaya T, Endo F, Sasaki Y, Sasaki N, Yaegashi M, Akiyama Y, Sasaki A, Masuda M, Yamada T, Tokino T, Nishizuka S.
  • Organizer: Amerian Association for Cancer Research (AACR)
  • Int'l Joint Research / Invited
• [Presentation] Regulation of neural progenitor fate during development (2019)
  • Author(s): Yukiko Gotoh
  • Organizer: Center for Regenerative Therapies TU Dresden (CRTD) Summer Conference
  • Int'l Joint Research / Invited
• [Presentation] Single Cell Analysis of Cancer Cells (2019)
  • Author(s): Yutaka Suzuki
  • Organizer: EMBO Workshop on Single Cell Biology
  • Int'l Joint Research / Invited
• [Presentation] Chromosome Organization in Living Human Cells Revealed by Single Nucleosome Imaging. (2019)
  • Author(s): Maeshima K.
  • Organizer: Francois Jacob Conference “Evolution, Structure and Function of Chromosomes High Order Structure”
  • Int'l Joint Research / Invited
• [Presentation] Trials of targeted gene disruption of the plant mitochondrial genomes by mitoTALEN. (2019)
  • Author(s): Shin-ichi Arimura
  • Organizer: Gordon conference Chloroplast Biotechnology
  • Int'l Joint Research / Invited
• [Presentation] Do viruses enhance the carbon export down to the deep ocean? (2019)
  • Author(s): Ogata H.
  • Organizer: Gordon Research Conference-Applied and Environmental Microbiology : Shaping the Earth's Microverse
  • Int'l Joint Research / Invited
• [Presentation] Emerging Epitranscriptomics in the Synapses (2019)
  • Author(s): Wang DO
  • Organizer: Indian Academy of Neuroscience
  • Int'l Joint Research / Invited
• [Presentation] TARGETED DISRUPTION OF MITOCHONDRIAL GENES ASSOCIATED WITH CYTOPLASMIC MALE STERILITY IN RICE AND RAPESEED (2019)
  • Author(s): Shin-ichi Arimura
  • Organizer: International conference of Plant Mitochondrial Biology
  • Int'l Joint Research / Invited
• [Presentation] Stress-dependent activation of p53 induces the transition to 2-cell embryo-like state of mouse ESC (2019)
  • Author(s): 山口新平
  • Organizer: International Symposium on Epigenome 2019
  • Int'l Joint Research / Invited
• [Presentation] Chromatin regulation during neural development (2019)
  • Author(s): Yusuke Kishi
  • Organizer: IQB Mini Symposium “Chromatin : from Structure to Physiology”
  • Int'l Joint Research / Invited
• [Presentation] Chromosome Organization in Living Human Cells Revealed by Single Nucleosome Imaging. (2019)
  • Author(s): Maeshima K.
  • Organizer: Joint 12th EBSA-10th ICBP-IUPAP Biophysics Congress
  • Int'l Joint Research / Invited
• [Presentation] Metagenomic and metabolomic analyses in colorectal cancer (2019)
  • Author(s): 山田 拓司
  • Organizer: Microbiome Movement - Drug Development, Singapore
  • Int'l Joint Research / Invited
• [Presentation] Chromatin-level regulation of neural stem/progenitor cell fate (2019)
  • Author(s): Daichi Kawaguchi, Yusuke Kishi, Yukiko Gotoh
  • Organizer: NCCR-IRCN “22q” Workshop
  • Int'l Joint Research / Invited
• [Presentation] Metagenomic and metabolomic analyses reveal dynamic shifts in gut microbiota along the adenoma-carcinoma sequence in colorectal cancer (2019)
  • Author(s): 山田 拓司
  • Organizer: OIST Workshop "A World of Microbiota"
  • Int'l Joint Research / Invited
• [Presentation] Vascular connection between parasitic plants and host plants (2019)
  • Author(s): Satoko Yoshida
  • Organizer: Plant Vascular Biology 2019
  • Int'l Joint Research / Invited
• [Presentation] Inverse synaptic tagging of Arc and cognitive refinement processes (2019)
  • Author(s): Hiroyuki Okuno
  • Organizer: Polish Neuroscience Society
  • Int'l Joint Research / Invited
• [Presentation] Genome-Wide Kinetic Analysis of pre-mRNA Processing Reveals Action of Splicing Regulators (2019)
  • Author(s): Hidehito Kuroyanagi
  • Organizer: Polish-Japanese RNA Meeting
  • Int'l Joint Research / Invited
• [Presentation] Roles of microglia and immunological circumstance in onset and progression of retinal photoreceptor degeneration (2019)
  • Author(s): Sumiko Watanabe
  • Organizer: Retina workshop 2019
  • Int'l Joint Research / Invited
• [Presentation] Genetic basis for host and parasitic plant communication (2019)
  • Author(s): Satoko Yoshida
  • Organizer: The 15th World Congress on Parasitic Plants
  • Int'l Joint Research / Invited
• [Presentation] Dissecting significance of single gene expression rhythm via enhancer genetics and multi-omics analyses (2019)
  • Author(s): Shinpei Kawaoka
  • Organizer: The 20th International Conference on Systems Biology : Trans-omics workshop - The 3rd International symposium for trans-omics
  • Int'l Joint Research / Invited
• [Presentation] Single Cell Analysis Reveals the Heterogeneity of Cancer Cells : Lessons from the Analyses of Adult T Cell Leukemia and Lung Cancer Cells (2019)
  • Author(s): Yutaka Suzuki
  • Organizer: The 28th International KOGO Annual Conference
  • Int'l Joint Research / Invited
• [Presentation] Roles of microglia and immunological circumstance in onset and progression of retinal photoreceptor degeneration (2019)
  • Author(s): Sumiko Watanabe
  • Organizer: The 2nd International Vision Symposia- Ocular Development, Neurodegeneration and Repair
  • Int'l Joint Research / Invited
• [Presentation] Streptomyces metabolites in microbial interaction (2019)
  • Author(s): Kenji Ueda
  • Organizer: The 4th A3 Foresight Symposium on Chemical & Synthetic Biology of Natural Products
  • Int'l Joint Research / Invited
• [Presentation] Chromosome-scale assemblies are coming back. (2019)
  • Author(s): Yasukazu Nakamura
  • Organizer: The Asian Bioinformatics Consortium (ABC) Symposium
  • Int'l Joint Research / Invited
• [Presentation] Regulation of neural progenitor-stem cell fate during development (2019)
  • Author(s): Yukiko Gotoh
  • Organizer: The Hospital for Sick Children symposium
  • Int'l Joint Research / Invited
• [Presentation] Regulation of adult neural stem/progenitor cell fate (2019)
  • Author(s): Yukiko Gotoh
  • Organizer: The Notch Meeting XI
  • Int'l Joint Research / Invited
• [Presentation] The Jomon genome and migration of anatomical modern humans to East Asia in the joint session “The expansion of anatomical modern humans and the spread of Japonic language family.” (2019)
  • Author(s): Hiroki Oota
  • Organizer: Transeurasian millets and beans, language and genes
  • Int'l Joint Research / Invited
• [Presentation] Chromatin regulation during neuronal maturation (2019)
  • Author(s): Yusuke Kishi
  • Organizer: Wellcome Trust Workshop on Neuronal Maturation
  • Int'l Joint Research / Invited
• [Presentation] De novo germline mutations and their phenotypic effects on future generations (2019)
  • Author(s): Arikuni Uchimura, Yasunari Satoh
  • Organizer: 第6回アジア環境変異原学会/日本環境変異原学会第48回大会 合同大会
  • Int'l Joint Research / Invited
• [Presentation] Intracellular evolution through loss of photosynthesis and adaptation to a heterotrophic lifestyle revealed by the genome analysis of a non-photosynthetic diatom (2019)
  • Author(s): Ryoma Kamikawa, Takuro Nakayama, Daniel Moog, Takayuki Fujiwara, Ryo Onuma, Shin-ya Miyagishima, Keitaro Kume, Ugo Cenci, Bernard Henrissat, Kaori Oyama, Misako Kato, Hideaki Miyashita, Goro Tanifuji, Yasuhiro Tanizawa, Takako Mochizuki, Mika Sakamoto, Yasukazu Nakamura
  • Organizer: 14th International Colloquium on Endocytobiology and Symbiosis, Lille, France
  • Int'l Joint Research
• [Presentation] Identification of aquaporins responsible for the regulation of water reabsorption in the collecting ducts of a saltwater fish (2019)
  • Author(s): Erika Watanabe, Keiichiro Fujimori, Yutaka Suzuki, Akira Kato
  • Organizer: 14th TOIN International Symposium on Biomedical Engineering
  • Int'l Joint Research
• [Presentation] Searching for the genes involved in the dramatic inprovement of the percentage of fruit set in the F1 hybrids of Capsicum chinense (2019)
  • Author(s): Yamazaki A, Shirakawa K, Hosokawa M.
  • Organizer: 17th EUCARPIA meeting on Capsicum and Eggplant
  • Int'l Joint Research
• [Presentation] Looking for ancestral genomic features in Parmales algae : the sister group of diatoms. (2019)
  • Author(s): 伴 広輝、Blanc-Mathieu Romain、桑田 晃、佐藤晋也、吉川伸哉、一宮睦雄、緒方博之
  • Organizer: 19th Annual International Workshop on Bioinformatics and Systems Biology
  • Int'l Joint Research
• [Presentation] Seasonal dynamics of a proposed group of giant viruses and bloom forming eukaryotic phytoplankton (2019)
  • Author(s): Prodinger F., Endo H., Li Y., Tominaga K., Tatsuhiro I., Gotoh Y., Yoshida T., Ogata H.
  • Organizer: 19th Annual International Workshop on Bioinformatics and Systems Biology
  • Int'l Joint Research
• [Presentation] Vernalization alters histone H3 lysine 27 trimethylation at FLC locus in Brassica rapa (2019)
  • Author(s): Ayasha Akter, Satoshi Takahashi, Namiko Nishida, Naomi Miyaji, Takeshi Yasuda, Yutaka Suzuki, Motoaki Seki, Ryo Fujimoto
  • Organizer: 2019 KSBB & SABRAO International Conference on Plant Breeding for Sustainable Development
  • Int'l Joint Research
• [Presentation] Metabolic flow from glycolysis to TCA cycle is critical for skeletal muscle stem cell differentiation and myotube formation during regeneration in mice (2019)
  • Author(s): Hori S, Hiramuki Y, Nishimura D, Sato F, Sehara-Fujisawa A
  • Organizer: 2019 Myogenesis Gordon Research Conference
  • Int'l Joint Research
• [Presentation] Metabolic Lifestyles of Nitrite Oxidizer Nitrotoga under Mixotrophic and Heterotrophic Conditions (2019)
  • Author(s): Kento Ishii, Hirotsugu Fujitani, Yuji Sekiguchi, Satoshi Tsuneda
  • Organizer: 2019 Nordic meeting in molecular microbial ecology
  • Int'l Joint Research
• [Presentation] Mechanoreceptor-mediated temperature sensation in cold tolerance (2019)
  • Author(s): Natsune Takagaki, Akane Ohta, Kohei Ohnishi, Yohei Minakuchi, Atsushi Toyoda, Yuichiro Fujiwara & Atsushi Kuhara
  • Organizer: 22th C. elegans International conference
  • Int'l Joint Research
• [Presentation] The nutritional basis of Drosophila associated microbes for larval growth. (2019)
  • Author(s): Ayumi Mure
  • Organizer: 26th European Drosophila Research Conference
  • Int'l Joint Research
• [Presentation] SonicParanoid : fast, accurate and easy orthology inference. (2019)
  • Author(s): Salvatore Cosentino
  • Organizer: 27th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 18th European Conference on Computational Biology (ECCB)
  • Int'l Joint Research
• [Presentation] A potential biomarker panel to distinguish gastric cancer from duodenal ulcer : result from GWAS in East Asian-type Helicobacter pylori (2019)
  • Author(s): Vo Phuoc Tuan, Koji Yahara, Kazunari Murakami, Mototsugu Kato, Ichizo Kobayashi, Yoshio Yamaoka
  • Organizer: 27th Annual Meeting of the Korean College of Helicobacter and upper Gastrointestinal Research & 16th Japan-Korea Joint Symposium on Helicobacter infection
  • Int'l Joint Research
• [Presentation] A flexible survival strategy of ammonia-oxidizing bacteria by growth heterogeneity at a single cell level (2019)
  • Author(s): Rino Isshiki, Hirotsugu Fujitani, Daiki Tanaka, Tetsushi Sekiguchi, Satoshi Tsuneda.
  • Organizer: 6th International Conference on Nitrification and Related Processes
  • Int'l Joint Research
• [Presentation] Physiological and Genomic Characteristics of a New “Candidatus Nitrotoga” Isolate (2019)
  • Author(s): Kento Ishii, Hirotsugu Fujitani, Yuji Sekiguchi, Satoshi Tsuneda
  • Organizer: 6th International Conference on Nitrification and Related Processes
  • Int'l Joint Research
• [Presentation] Cell-type-specific patterned activities specify gene expression patterns for olfactory circuit formation (2019)
  • Author(s): Takeuchi H
  • Organizer: AFMC (Asian Federation of Medicinal Chemistry) international medicinal chemistry symposium
  • Int'l Joint Research
• [Presentation] Finding complex pathogenic variants using nanopore long reads (2019)
  • Author(s): 三橋里美
  • Organizer: American Society of Human Genetics 2019
  • Int'l Joint Research
• [Presentation] A genome-wide association study identified novel loci associated with the progression from asymptomatic hyperuricemia to gout. (2019)
  • Author(s): Yusuke Kawamura, Hirofumi Nakaoka, Akiyoshi Nakayama, Yukinori Okada, Ken Yamamoto, Hiroshi Ooyama, Blanka Stiburkova, Tony R Merriman, Masahiro Nakatochi, Kenji Wakai, Michiaki Kubo, Kimiyoshi Ichida, Nariyoshi Shinomiya, Hirotaka Matsuo
  • Organizer: Annual European Congress of Rheumatology EULAR 2019
  • Int'l Joint Research
• [Presentation] Essentiality of CENP-A depends on its binding mode to HJURP (2019)
  • Author(s): Tetsuya Hori
  • Organizer: ASCB EMBO 2019 Meeting
  • Int'l Joint Research
• [Presentation] Evaluationg genomic susceptibility for gastric cancer (2019)
  • Author(s): Yoshio Yamaoka
  • Organizer: Asian Pacific Digestive Week
  • Int'l Joint Research
• [Presentation] DFAST : Prokaryotic Genome Annotation Pipeline for Faster Data Submission to Public Sequence Database (2019)
  • Author(s): Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, and Yasukazu Nakamura
  • Organizer: ASM Microbe 2019
  • Int'l Joint Research
• [Presentation] Aberrant Immune Response to Periodontopathic Microbiota in Patients with IgA Nephropathy (2019)
  • Author(s): Hiroki Yamaguchi, Shin Goto, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Ichiei Narita
  • Organizer: ASN Kidney Week 2019
  • Int'l Joint Research
• [Presentation] RNA metabolism can be a novel new bio marker for malignant gastrointestinal cancer (2019)
  • Author(s): M. Konno, H. Ishii
  • Organizer: Cell Symposia : Regulatory RNAs
  • Int'l Joint Research
• [Presentation] Global usage of replicative DNA polymerase in human cells (2019)
  • Author(s): Fumiya Yoshifuji, Eri Koyanagii, Tomoo Ogi, Toyoaki Natsume, Masato Kanemaki, Yasukazu Daigaku
  • Organizer: Cold Spring Harbor Laboratory Meeting "Eukaryotic DNA Replication & Genome Maintenance"
  • Int'l Joint Research
• [Presentation] Roles of a transcription factor 19A in the osteoblast development of sternum (2019)
  • Author(s): Kuriki M, Sato F, Sumiyama K, Kawakami K, Sehara-Fujisawa A.
  • Organizer: ECTS (European Calcified Tissue Society)2019
  • Int'l Joint Research
• [Presentation] In vivo status of S-adenosyl-L-methionine-induced translation arrest on Arabidopsis CGS1 mRNA (2019)
  • Author(s): Miku Fujita, Seidai Takamatsu, Tomoya Imamichi, Yukako Chiba, Satoshi Naito and Yui Yamashita
  • Organizer: EMBO Conference : Protein Synthesis and Translational Control
  • Int'l Joint Research
• [Presentation] Reverse genetics-based biochemical strudies of the ribosomal exit tunnel constriction region on eukaryotic programed ribosome stalling systems (2019)
  • Author(s): Seidai Takamatsu, Yubun Ohashi, Noriyuki Onoue, Yoko Tajima, Tomoya Imamichi, Kyoko Morimoto, Shinya Yonezawa, Hitoshi Onouchi, Yui Yamashita, and Satoshi Naito
  • Organizer: EMBO Conference : Protein Synthesis and Translational Control
  • Int'l Joint Research
• [Presentation] CNV in silver nanoparticle-primed hyperactive rats (2019)
  • Author(s): Masami Ishido
  • Organizer: Eurotox 2019
  • Int'l Joint Research
• [Presentation] Mixotrophic Lifestyle of Nitrite Oxidizer Nitrotoga in the Presence of Pyruvate (2019)
  • Author(s): Kento Ishii, Hirotsugu Fujitani, Yuji Sekiguchi, Satoshi Tsuneda
  • Organizer: FEMS2019
  • Int'l Joint Research
• [Presentation] Improving under-sampled imaging data quality in live tissue imaging. (2019)
  • Author(s): Sogabe M, Ohzeki M, Sehara-Fujisawa A.
  • Organizer: Focus on Microscopy 2019
  • Int'l Joint Research
• [Presentation] Tandem paired nicking using Cas9 nickases permits targeted knock-in without significant inhibition by p53 (2019)
  • Author(s): Toshinori Hyodo, Md Lutfur Rahman, Atsushi Toyoda, Sivasundaram Karnan, Akinobu Ota, Shinobu Tuzuki, Yoshitaka Hosokawa, Hiroyuki Konishi
  • Organizer: Frontiers in Genome Engineering 2019
  • Int'l Joint Research
• [Presentation] Defining the highly proliferative IFE stem cell state in regional skin homeostasis and remodeling (2019)
  • Author(s): 一條遼、豊島文子
  • Organizer: Gordon Research Conference
  • Int'l Joint Research
• [Presentation] Biology of a picoeukaryotic phytoplankton, Parmales (Bolidophyceae), a sister group of diatoms. (2019)
  • Author(s): 桑田 晃
  • Organizer: In dialogue with diatoms : Anna Godhe Memorial Conference
  • Int'l Joint Research
• [Presentation] Profiling RNAs binding with the nucleoprotein of severe fever with thrombocytopenia syndrome virus (SFTSV) revealed orchestrated replication of a segmented RNA virus (2019)
  • Author(s): Keita Mizuma, Keita Matsuno, Masatoshi Okamatsu, Ayato Takada, Yoshihiro Sakoda
  • Organizer: International meeting on arboviruses and their vectors (IMAV 2019)
  • Int'l Joint Research
• [Presentation] Update of MarpolBase to accommodate ver. 5.1 gene annotation. (2019)
  • Author(s): Yasuhiro Tanizawa, Masaru Yagura, Mika Sakamoto, Takako Mochizuki, Sean A. Montgomery, Bence Galik, Shohei Yamaoka, Ryuichi Nishihama, Katsuyuki T. Yamato, Takayuki Kohchi, Yasukazu Nakamura, Chang Liu, and Frédéric Berger
  • Organizer: Marchantia Workshop 2019
  • Int'l Joint Research
• [Presentation] Ethylene signaling mediates fine-tuning of host infection by parasitic plants (2019)
  • Author(s): Songkui Cui, Tomoya Kubota, Yuko Yoshimura, Ken Shirasu, Satoko Yoshida
  • Organizer: Molecular Plant Microbe Interaction
  • Int'l Joint Research
• [Presentation] Prediction of hearing prognosis in NF2 related vestibular schwannoma by genetic analysis (2019)
  • Author(s): Yu Teranishi, Satoru Miyawaki, Atsushi Okano, Shunsaku Takayanagi, Hirofumi Nakatomi, Nobuhito Saito
  • Organizer: NF Conference
  • Int'l Joint Research
• [Presentation] Prediction of hearing prognosis in NF2 related vestibular schwannoma by genetic analysis (2019)
  • Author(s): Yu Teranishi, Satoru Miyawaki, Atsushi Okano, Shunsaku Takayanagi, Hirofumi Nakatomi, Nobuhito Saito
  • Organizer: North American Skull Base Society
  • Int'l Joint Research
• [Presentation] Characterization of SOP1 in posttranscriptional regulation of defense related gene expression. (2019)
  • Author(s): Hagito, K., Iwamoto, N., Takagi, M., Takagi, H., Tanaka, K., Taji, T., Shinozaki, K., Terauchi, R., Shirasu, K. Ichimura, K.
  • Organizer: Phytogene Symposium XI
  • Int'l Joint Research
• [Presentation] The role of Nmnatl during retinal development (2019)
  • Author(s): Hiroshi Kuribayashi
  • Organizer: Retina workshop 2019
  • Int'l Joint Research
• [Presentation] MeCP2-mediated miR-199a processing regulates fate specification of neural stem cells (2019)
  • Author(s): Hideyuki Nakashima, Keita Tsujimura, Koichiro Irie, Takuya Imamura, Kinichi Nakashima
  • Organizer: SFN2019
  • Int'l Joint Research
• [Presentation] Mechanistic insights of metronidazole resistance revealed by next-generation sequencing of Helicobacter pylori from Democratic Republic of Congo (2019)
  • Author(s): Tshibangu Evariste, Tuan VP, Patrick Ngoma, Pascal Tshiamala, Antoine Tshimpi, Matsumoto T, Akada J, Kido Y, Ahuka-Mundeke Steve, Mumba-Ngoyi Dieudonne, Dishashi Tumba, Yamaoka Y.
  • Organizer: The 10th International Congress on Infectious Diseases
  • Int'l Joint Research
• [Presentation] Illegitimate translation from frameshift mutations created by CRISPR-Cas9 genome editing rescues the lethality of Gli3 KO phenotype in the mouse. (2019)
  • Author(s): Gondo Y, Makino S, Inoue K, Hirose M, Fukumura R, Ogura A
  • Organizer: The 13th International Workshop on Advanced Genomics
  • Int'l Joint Research
• [Presentation] De novo germline mutations and the phenotypic effects of mutation accumulation in Iaboratory mice (2019)
  • Author(s): Arikuni Uchimura, Yasunari Satoh, Mayumi Higuchi, Yohei Minakuchi, Jo Nishino, Atsushi Toyoda, Takeshi Yagi
  • Organizer: The 16th International Congress of Radiation Research 2019
  • Int'l Joint Research
• [Presentation] Induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes (2019)
  • Author(s): Yasunari Satoh, Jun-ichi Asakawa, Mayumi Nishimura, Harry M. Cullings, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
  • Organizer: The 16th International Congress of Radiation Research 2019
  • Int'l Joint Research
• [Presentation] Genome-Wide Kinetic Analysis of pre-mRNA Processing in C. elegans (2019)
  • Author(s): Eichi Watabe and Hidehito Kuroyanagi
  • Organizer: The 24th Annual Meeting of the RNA Society
  • Int'l Joint Research
• [Presentation] Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria belonging to Abditibacteriota (former Candidate division FBP) (2019)
  • Author(s): Kazuki Kobayashi, Hideki Aoyagi
  • Organizer: The 31st Annual Meeting of the Thai Society for Biotechnology and International Conference
  • Int'l Joint Research
• [Presentation] Novel natural products biosynthetic potential of the class Ktedonobacteria (2019)
  • Author(s): Zheng, Y., Saito, A., Wang C. M., Toyoda, A., Minakuchi, Y., Sakai, Y., Abe, K., Yokota, A. and Yabe, S.
  • Organizer: The 8th FEMS Conference
  • Int'l Joint Research
• [Presentation] Semibulk RNA-Seq analysis for revealing local cellular environments (2019)
  • Author(s): Issei Tsuchiya
  • Organizer: The Biology of Genomes
  • Int'l Joint Research
• [Presentation] Analysis of lung cancer splicing abnormality using Nanopore-sequencing (2019)
  • Author(s): Liu Xu
  • Organizer: The Biology of Genomes
  • Int'l Joint Research
• [Presentation] Identification of local copy number aberrations in cancer genomes using nanopore sequencer (2019)
  • Author(s): Yoshitaka Sakamoto
  • Organizer: The Biology of Genomes
  • Int'l Joint Research
• [Presentation] Multi-omics modules construction by non-parametric detection of conservation in features' ranks correlations in multiple cancers (2019)
  • Author(s): Sarun Sereewattanawoot
  • Organizer: The Biology of Genomes
  • Int'l Joint Research
• [Presentation] Revealing mating type locus evolution based on comparative genomics of heterothallic and homothallic Volvox species (2019)
  • Author(s): Yamamoto, K., Hamaji, T., Kawai-Toyooka, H., Noguchi, H., Minakuchi, Y., Toyoda, A. and Nozaki, H.
  • Organizer: The Fifth International Volvox Conference
  • Int'l Joint Research
• [Presentation] Toward molecular bases of photoheterotrophy in the colonial volvocine species Astrephomene gubernaculifera and Volvulina steinii (2019)
  • Author(s): Suguchi, A., Yamashita, S., Matsuzaki, R., Suzuki, S., Yamaguchi, H., Kawachi, M., Noguchi, H., Minakuchi, Y., Toyoda, A. and Nozaki, H.
  • Organizer: The Fifth International Volvox Conference
  • Int'l Joint Research
• [Presentation] Unveiling the molecular bases involved in another evolution of multicellular complexity in Astrephomene gubernaculifera (2019)
  • Author(s): Yamashita, S., Suguchi, A., Yamamoto, Y., Matsuzaki, R., Kawachi, M., Noguchi, H., Minakuchi, Y., Toyoda, A., Hirono, M., Sekimoto, H. and Nozaki, H.
  • Organizer: The Fifth International Volvox Conference
  • Int'l Joint Research
• [Presentation] Genome sequence analysis on Ficus carica and F. erecta for the Ceratocystis canker resistance breeding programs in fig (2019)
  • Author(s): Shirasawa K, Yakushiji H, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S
  • Organizer: VI International Symposium on Fig
  • Int'l Joint Research
• [Presentation] Current knowledge of genomics for H. pylori from Far East (2019)
  • Author(s): Yoshio Yamaoka
  • Organizer: XXXII nd International Workshop on Helicobacter & Microbiota in Inflammation & Cancer
  • Int'l Joint Research
• [Presentation] Transcriptional regulatory divergence underpinning species-specific learned vocalization in songbirds (2019)
  • Author(s): Hongdi Wang, Azusa Sawai, Noriyuki Toji, Rintaro Sugioka, Yukino Shibata, Yuika Suzuki, Yu Ji, Shin Hayase, Satoru Akama, Jun Sese, Kazuhiro Wada
  • Organizer: Society for Neurosience
  • Int'l Joint Research
• [Presentation] 昆虫の模様と形の進化発生生物学 (2019)
  • Author(s): 新美輝幸・安藤俊哉・森田慎一
  • Organizer: 2019年度昆虫DNA研究会第16回研究集会 特別講演
  • Invited
• [Presentation] ゼニゴケ・高密度な実験情報の集約によるモデル植物化の加速 (2019)
  • Author(s): 中村 保一
  • Organizer: 「データ駆動型植物科学最前線」第37回日本植物細胞分子生物学会大会
  • Invited
• [Presentation] Emerging Neuropitranscriptomics (2019)
  • Author(s): Wang DO
  • Organizer: 2019 Tzu Chi-Academia Sinica Biomedical Conference
  • Invited
• [Presentation] Chromosome organization in living cells revealed by single nucleosome imaging. (2019)
  • Author(s): Maeshima K.
  • Organizer: 42th Molecular Biology Society of Japan Annual Meeting
  • Invited
• [Presentation] Chromosome organization in living cells revealed by single nucleosome imaging. (2019)
  • Author(s): Maeshima K.
  • Organizer: 57th Biophysical Society of Japan Annual Meeting
  • Invited
• [Presentation] RNAイメージング (2019)
  • Author(s): Wang DO
  • Organizer: Chemistry for Neuroscience 2019
  • Invited
• [Presentation] Coming back to Qingdao after 25 years of studying the volvocine green algae, a model lineage for evolution of female-male and multicellularity (2019)
  • Author(s): Nozaki, H.
  • Organizer: Plenary Lecture, The 20th Meeting of the Algae Branch of Chinese Society for Oceanography and Limnology『中国の国内学会』
  • Invited
• [Presentation] Studies of colonial volvocine green algae unveiling the evolution of multicellularity and sex (2019)
  • Author(s): Nozaki, H.
  • Organizer: Special seminar, College of Fisheries and Life Science, Shanghai Ocean University「中国の大学」
  • Invited
• [Presentation] Unveiling the evolution of multicellularity and sex : evidences from colonial volvocine green algae (2019)
  • Author(s): Nozaki, H.
  • Organizer: Special seminar, Faculty of Science, Khon Kaen University (KKU)「タイの大学」
  • Invited
• [Presentation] 古代ゲノムから見た東ユーラシア基層集団～アイヌ民族の位置を展望する～ (2019)
  • Author(s): 太田博樹
  • Organizer: シンポジウム「考古学・人類学とアイヌ民族」
  • Invited
• [Presentation] PromethIONをつかったヒト遺伝性疾患のゲノム解析 (2019)
  • Author(s): 三橋里美
  • Organizer: ナノポア現場の会
  • Invited
• [Presentation] 妊娠期における臓器スケーリング (2019)
  • Author(s): 豊島文子
  • Organizer: ワークショップ「ライフコースと個体および臓器スケーリング」
  • Invited
• [Presentation] カブトムシの世界!～カブトムシのメスに角がないのはなぜ!?～ (2019)
  • Author(s): 新美輝幸
  • Organizer: 愛知学院大学 第161回モーニング・セミナー
  • Invited
• [Presentation] 線虫C. elegansから見つかってきたGPCR型とDEG型の新規の温度受容体 (2019)
  • Author(s): 高垣菜式、大西康平、太田茜、久原篤
  • Organizer: 異分野融合による次世代光生物学(研究会)
  • Invited
• [Presentation] Chromatin-mediated control of meiotic recombination in fission yeast (2019)
  • Author(s): 山田貴富
  • Organizer: 遺伝研研究会「有性生殖における染色体・クロマチン・核動態に関する研究会」
  • Invited
• [Presentation] Mechanism determine gene silencing efficacies by miRNAs/siRNAs : thermodynamic properties and secondary structures. (2019)
  • Author(s): 程久美子
  • Organizer: 沖縄科学技術大学院大学(OIST)セミナー
  • Invited
• [Presentation] 小分子ノンコーディングRNAが制御する抗ウイルス生体防御 (2019)
  • Author(s): 高橋朋子、程久美子
  • Organizer: 核酸代謝鶴岡カンファレンス
  • Invited
• [Presentation] 微量変異原のリスク評価を可能とする高速鋭敏なマウス生殖細胞系列変異検出系の開発とSLT法の比較 (2019)
  • Author(s): 権藤洋一
  • Organizer: 基礎物理学研究所研究会放射線の生体影響解明への分野横断による挑戦
  • Invited
• [Presentation] RNA epigenetics in neurons and synapses (2019)
  • Author(s): Wang DO
  • Organizer: 記憶研究会
  • Invited
• [Presentation] ビタミンB 12 を利用する光センサータンパク質とその光遺伝学への応用 (2019)
  • Author(s): 髙野英晃
  • Organizer: 京都大学生存圏研究所・第252回オープンセミナー
  • Invited
• [Presentation] エタノール発酵能の違いは種の違い?～南極産担子菌酵母の全ゲノム解析による種の再検討 (2019)
  • Author(s): 辻 雅晴
  • Organizer: 酵母細胞研究会
  • Invited
• [Presentation] RNA epigenetics in neurons and synapses (2019)
  • Author(s): Wang DO
  • Organizer: 慈済大学フォーラム
  • Invited
• [Presentation] 光るウキクサで時計を見る 限界日長適応の基盤としての「概日」時計 (2019)
  • Author(s): 村中智明
  • Organizer: 種生物学会
  • Invited
• [Presentation] 性染色体進化の謎を解く : ショウジョウバエのネオ性染色体を用いたアプローチ (2019)
  • Author(s): 野澤 昌文
  • Organizer: 首都大学東京生物学教室セミナー
  • Invited
• [Presentation] 東・東南アジア以東におけるヒトの遺伝的多様性について～古人骨ゲノム解析を中心として/Genetic diversity of East/Southeast Asian populations : Ancient DNA analysis talks (2019)
  • Author(s): 太田博樹
  • Organizer: 新学術領域研究『パレオアジア文化史学』 第8回研究大会 ワークショップ「東アジアー東南アジアにおける人類の拡散 : 生態資源と利用法の多様性からのアプローチ」
  • Invited
• [Presentation] アサガオのエピジェネティクスによる模様形成と経世代伝達 (2019)
  • Author(s): 星野敦
  • Organizer: 進化学会
  • Invited
• [Presentation] Evo-Devoで探る昆虫の新奇形質 : テントウムシの斑紋とカブトムシの角 (2019)
  • Author(s): 新美輝幸
  • Organizer: 第1260回 生物科学セミナー
  • Invited
• [Presentation] Chromatin-level regulation of neural stem/progenitor cell fate (2019)
  • Author(s): Naohiro Kuwayama, Yusuke Kishi, Daichi Kawaguchi, Yukiko Gotoh
  • Organizer: 第13回エビジェネティクス研究会年会
  • Invited
• [Presentation] 動的なキネトコア構造の実体 (2019)
  • Author(s): 深川竜郎
  • Organizer: 第19回日本蛋白質科学会年会・第71回日本細胞生物学会大会合同年次大会
  • Invited
• [Presentation] ウィルス感染細胞における抗ウィルス応答の使い分け戦略 (2019)
  • Author(s): 後藤由季子
  • Organizer: 第28回日本Cell Death学会学術集会
  • Invited
• [Presentation] 昆虫の多様な形質をもたらす分子メカニズムを探る (2019)
  • Author(s): 新美輝幸・安藤俊哉・森田慎一
  • Organizer: 第31回 高遠・分子細胞生物学シンポジウム「微生物・植物・動物・ヒトをつらぬくバイオロジー」
  • Invited
• [Presentation] 雌のみが擬態する蝶の生存戦略のしくみと進化 (2019)
  • Author(s): 藤原晴彦
  • Organizer: 第35回国際生物学賞記念シンポジウム・昆虫の社会性と共生をめぐる生物科学
  • Invited
• [Presentation] 染色体分配を司るセントロメア・キネトコアのダイナミクス (2019)
  • Author(s): 深川竜郎
  • Organizer: 第38回分子病理研究会淡路シンポジウム
  • Invited
• [Presentation] 平滑筋肉腫の新しい動物モデルを用いたゲノム解析 (2019)
  • Author(s): 小玉美智子
  • Organizer: 第3回日本肉腫学会
  • Invited
• [Presentation] がんが個体に悪影響を与える仕組 : がん悪液質(Cachexia)の解明 (2019)
  • Author(s): 河岡 慎平
  • Organizer: 第40回 阿蘇シンポジウム「がん、免疫、感染症研究のフロントライン」
  • Invited
• [Presentation] エンハンサー遺伝学と多階層オミクス解析によりがんと宿主の関係性を紐解く (2019)
  • Author(s): 河岡 慎平
  • Organizer: 第42回日本分子生物学会年会 ワークショプ 「情報と生命の融合科学がもたらす変革 ; オミクス解析の限界を突破するために」
  • Invited
• [Presentation] 転写因子IRF8によるミエロイド細胞の分化制御とその機構 (2019)
  • Author(s): 田村 智彦
  • Organizer: 第42回日本分子生物学会
  • Invited
• [Presentation] Kinetochore Dynamics During Progression of Cell Cycle. (2019)
  • Author(s): Tatsuo Fukagawa
  • Organizer: 第42回日本分子生物学会年会
  • Invited
• [Presentation] ヒト細胞のおけるDNA複製動態の柔軟さ, 危うさ (2019)
  • Author(s): 小柳恵理, 吉藤郁弥, 大学保一
  • Organizer: 第42回日本分子生物学会年会
  • Invited
• [Presentation] 人類集団の起源と変遷～古代の劣性遺伝性疾患など様々な角度から見つめる～ (2019)
  • Author(s): 木村亮介
  • Organizer: 第46回日本マススクリーニング学会学術集会
  • Invited
• [Presentation] 次世代シーケンサー(NGS)の進展と微生物研究への応用 (2019)
  • Author(s): 髙橋弘喜
  • Organizer: 第56回小児アレルギー学会
  • Invited
• [Presentation] 自発活動パターンに依存した嗅覚神経回路の精緻化 (2019)
  • Author(s): 竹内春樹
  • Organizer: 第5回定量生命科学研究所シンポジウム
  • Invited
• [Presentation] 植物ゲノム情報に基づく抗がん剤カンプトテシン生合成の解明 (2019)
  • Author(s): 山崎真巳
  • Organizer: 第63回日本薬学会関東支部大会 日本薬学会関東支部若手シンポジウム
  • Invited
• [Presentation] 腸内細菌と循環器疾患 (2019)
  • Author(s): 山下 智也、平田 健一
  • Organizer: 第67回日本心臓病学会学術集会
  • Invited
• [Presentation] Circulating tumor DNA モニタリングによる食道癌患者ゲノム情報の有効活用 (2019)
  • Author(s): 岩谷 岳、遠藤史隆, 千葉丈広, 八重樫瑞典, 佐々木教之, 二階春香, 馬場誠朗, 秋山有史, 佐々木章, 西塚 哲
  • Organizer: 第73回日本食道学会学術集会
  • Invited
• [Presentation] Post-therapeutic tumor burden monitoring with circulating tumor DNA in esophageal squamous cell carcinoma (2019)
  • Author(s): Iwaya T, Nishizuka S
  • Organizer: 第78回日本癌学会
  • Invited
• [Presentation] Dynamic translational regulation and organization at neuronal synapses, (2019)
  • Author(s): Wang DO
  • Organizer: 第92回日本生化学会大会
  • Invited
• [Presentation] 病原真菌Aspergillus fumigatusの環境応答能の理解に向けて (2019)
  • Author(s): 高橋弘喜
  • Organizer: 第92回日本細菌学会総会
  • Invited
• [Presentation] 大腸がんにおけるSFK-YAP経路の役割 (2019)
  • Author(s): 谷口 浩二
  • Organizer: 第92回日本生化学会
  • Invited
• [Presentation] 神経幹細胞にニューロン分化能を賦与するクロマチン制御機構の解明 (2019)
  • Author(s): 岸雄介
  • Organizer: 第92回日本生化学会大会
  • Invited
• [Presentation] 腸内細菌ってなんだ??-ヒト腸内メタゲノム解析が広げる医療 (2019)
  • Author(s): 山田 拓司
  • Organizer: 東京工業大学社会人アカデミー人間数理情報アカデミー2019
  • Invited
• [Presentation] 縄文人ゲノム解読への道のり (2019)
  • Author(s): 太田博樹
  • Organizer: 東北メディカル・メガバンク 第18回ゲノム・オミックス連携推進セミナー
  • Invited
• [Presentation] Analysis for transcriptional regulation mechanism of transposon-like elements in plants.(奨励賞受賞講演) (2019)
  • Author(s): 池田 陽子
  • Organizer: 日本エピジェネティクス研究会第13回年会
  • Invited
• [Presentation] 生魂情才 (2019)
  • Author(s): 後藤 修
  • Organizer: 日本バイオインフォマティクス学会2019年年会 第8回生命医薬情報学連合大会
  • Invited
• [Presentation] ショウジョウバエ卵巣におけるクロマチン制御機構 (2019)
  • Author(s): 齋藤都暁
  • Organizer: 日本遺伝学会
  • Invited
• [Presentation] ゲノム編集による定型外翻訳発見と臨床応用や実用化への影鐘 (2019)
  • Author(s): 牧野茂、権藤洋一
  • Organizer: 日本遺伝学会第91回大会
  • Invited
• [Presentation] オートファジーによる選択的なRNA分解機構の解析 (2019)
  • Author(s): 牧野 支保
  • Organizer: 日本遺伝学会第91回大会
  • Invited
• [Presentation] 宇宙滞在の骨格筋維持への影響を探る (2019)
  • Author(s): 瀬原淳子
  • Organizer: 日本宇宙生物科学会第33回大会 特別シンポジウム 「宇宙で生きるための宇宙生物科学の統合的理解に向けて」
  • Invited
• [Presentation] 骨格筋衛星細胞の維持・分化における糖代謝制御の重要性 (2019)
  • Author(s): 瀬原淳子、堀新平、平向洋介、西邨大吾、佐藤文規
  • Organizer: 日本筋学会
  • Invited
• [Presentation] 日本犬の成立に寄与したニホンオオカミのゲノム領域の解明 (2019)
  • Author(s): 寺井洋平
  • Organizer: 日本進化学会第21回大会
  • Invited
• [Presentation] アルツハイマー病に対する神経細胞特異的なエピゲノムアプローチ (2019)
  • Author(s): 間野 達雄
  • Organizer: 日本人類遺伝学会
  • Invited
• [Presentation] 古代ゲノム解析からみた東アジア人類集団史 (2019)
  • Author(s): 太田博樹
  • Organizer: 日本人類遺伝学会第64回大会 シンポジウム 「現代日本人の遺伝的多様性」
  • Invited
• [Presentation] 学習によって獲得される種特異的な発声パターン生成に関わる遺伝子発現制御メカニズム (2019)
  • Author(s): 和多和宏*、WANG Hongdi
  • Organizer: 日本生化学会
  • Invited
• [Presentation] Trials of Targeted Gene Disruption of Plant Mitochondrial Genomes by mitoTALENs (2019)
  • Author(s): Shin-ichi Arimura
  • Organizer: 日本生化学会シンポジウム
  • Invited
• [Presentation] 薬用植物における物質生産の分子基盤を探る (2019)
  • Author(s): 山崎真巳
  • Organizer: 日本生物環境工学会2019年千葉大会
  • Invited
• [Presentation] カブトムシの角形成機構から新規形質の進化を探る (2019)
  • Author(s): 新美輝幸・森田慎一・大出高弘
  • Organizer: 日本動物学会 第90回大会
  • Invited
• [Presentation] クテドノバクテリアの魅力～複雑な形態分化とゲノムに潜在する多様な機能 (2019)
  • Author(s): 矢部修平
  • Organizer: 日本農芸化学会東北支部70周年シンポジウム
  • Invited
• [Presentation] UAP56とURH49によるスプライシング制御を介した選択的mRNA輸送機構の解明 (2019)
  • Author(s): 藤田賢一
  • Organizer: 日本分子生物学会
  • Invited
• [Presentation] 植物ミトコンドリアゲノムの標的遺伝子破壊と遺伝的ダイナミクス (2019)
  • Author(s): Shin-ichi Arimura
  • Organizer: 日本分子生物学会ワークショップ
  • Invited
• [Presentation] Comparison of mutation detection systems in the mouse for low-dose radiation effects. (2019)
  • Author(s): Gondo Y
  • Organizer: 日本放射線影響学会第62回大会
  • Invited
• [Presentation] A new approach for de novo germline mutations using a mutation accumulation mouse model (2019)
  • Author(s): Arikuni Uchimura, Mayumi Higuchi, Yasunari Satoh, Yohei Minakuchi, Takahiro Tsuji, Masaaki Imanaka, Akiko Miura, Atsushi Toyoda, Takeshi Yagi
  • Organizer: 日本放射線影響学会第62回大会
  • Invited
• [Presentation] 神経活動パターンに依存した嗅覚地図の精緻化 (2019)
  • Author(s): 竹内春樹、中嶋藍、伊原尚樹、池谷裕二
  • Organizer: 日本味と匂学会第53回大会
  • Invited
• [Presentation] トンボの体色形成と紫外線反射メカニズム (2019)
  • Author(s): 二橋亮
  • Organizer: 分子系の複合電子機能第181委員会・第33回研究会「生物模倣と材料科学」
  • Invited
• [Presentation] Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構の解析 (2019)
  • Author(s): 長束 千尋, Salvatore Cosentino, 按田 瑞恵, 角 悟, 後藤 恭宏, 中村 佳司, 林 哲也, 岩崎 渉, 上田 賢志, 髙野 英晃
  • Organizer: 2019年度(第34回)日本放線菌学会大会
• [Presentation] HSATIII IncRNAによる2つのスプライシング制御機構 (2019)
  • Author(s): 二宮賢介
  • Organizer: RNAフロンティアミーティング2019
• [Presentation] 哺乳動物の雌性生殖細胞特異的なRNAサイレンシング機構の解明に向けて (2019)
  • Author(s): 石野響子、蓮輪英毅、塩見春彦
  • Organizer: RNAフロンティアミーティング2019
• [Presentation] Temperature sensation via mechanoreceptor DEG-1 in C. elegans cold tolerance (2019)
  • Author(s): Natsune Takagaki, Akane Ohta, Kohei Ohnishi, Yohei Minakuchi, Atsushi Toyoda, Yuichiro Fujiwara & Atsushi Kuhara
  • Organizer: 遺伝学会
• [Presentation] 細菌カロテノイド生産の光制御～あらたな光センサー候補CrtRファミリー～ (2019)
  • Author(s): 髙野英晃
  • Organizer: 遺伝研研究会
• [Presentation] イチジク株枯真性抵抗性を有するイヌビワの全ゲノム解読 (2019)
  • Author(s): 白澤健太・薬師寺博・森田剛成・軸丸祥大・池上秀利・豊田 敦・平川英樹・磯部祥子
  • Organizer: 園芸学会
• [Presentation] 神経線維腫症2型(NF2)関連聴神経腫瘍に伴う長期聴力予後成績と遺伝子解析に基づいた聴力予後予測 (2019)
  • Author(s): 寺西裕、宮脇哲、本郷博貴、堂福翔吾、岡野淳、高柳俊作、中冨浩文、斉藤延人
  • Organizer: 家族性腫瘍学会
• [Presentation] Functional analysis of MeCP2, the Rett syndrome responsible factor, mediated by microRNA in neural stem cells fate specification (2019)
  • Author(s): Hideyuki Nakashima, Keita Tsujimura, Koichiro Irie, Takuya Imamura, Kinichi Nakashima
  • Organizer: 幹細胞シンポジウム
• [Presentation] Exploring community changes of bloom forming eukaryotic phytoplankton and Megaviridae in Uranouchi Inlet, Japan (2019)
  • Author(s): Prodinger F., Endo H., Takano Y., Li Y., Tominaga K., Isozaki T., Blanc-Mathieu R., Gotoh Y., Nagasaki Keizo., Yoshida T., Ogata H.
  • Organizer: 環境ウイルス研究集会
• [Presentation] 京都府南部水系からの新規マルセイユウイルス株の分離と今後の比較ゲノム解析 (2019)
  • Author(s): 吉田亘騎, 武村政春, 遠藤 寿., Blanc-Mathieu R., 緒方博之
  • Organizer: 環境ウイルス研究集会
• [Presentation] 個体成長を支える共生微生物の栄養基盤解明に向けて (2019)
  • Author(s): 服部佑佳子
  • Organizer: 京都大学生命科学研究科シンポジウム
• [Presentation] 少産生物種における効果的適応放散仮説と実験進化学的検証の試み (2019)
  • Author(s): 権藤洋一
  • Organizer: 国立遺伝学研究所研究集会
• [Presentation] DEAD-box RNAヘリカーゼをコードするSMN2は抵抗性遺伝子SMN1/RPS6の正常な発現に必要である (2019)
  • Author(s): 高木桃子, 岩本直樹, 久保佑太, 森本貴行, 萩藤孝輔, 高木宏樹, 田中啓介, 太治輝昭, 秋光和也, 寺内良平, 白須賢, 市村和也
  • Organizer: 植物微生物研究会第29回研究交流会
• [Presentation] シス調節配列のモチーフ解析と共発現解析の統合によるカンプトテシン生合成候補遺伝子の探索 (2019)
  • Author(s): 林剛生, Rai Amit, 斉藤和季, 山崎真巳
  • Organizer: 新学術領域研究「生合成リデザイン」第3回若手シンポジウム
• [Presentation] ゴールデンハムスターの雌性生殖細胞におけるPIWI-piRNAの配列解析 (2019)
  • Author(s): 石野響子、蓮輪英毅、塩見春彦
  • Organizer: 生命情報科学若手の会第11回研究会
• [Presentation] Alternative splicing regulation of the S-adenosylmethionine synthase (sams) genes through adenosine methylation at their 3' splice sites (2019)
  • Author(s): 黒柳秀人
  • Organizer: 線虫研究の未来を創る会2019
• [Presentation] Nascent RNA sequencing reveals pre-mRNA processing dynamics governed by splicing regulators (2019)
  • Author(s): 渡部栄地
  • Organizer: 線虫研究の未来を創る会2019
• [Presentation] ゲノム科学と社会ユニット(GSユニット)による「ヒトゲノム研究倫理を考える会」の鳥取組み (2019)
  • Author(s): 山﨑千里、大橋範子、相澤弥生、小門穂、加藤和人
  • Organizer: 大阪大学医学部 全国教授の会 第7回総会
• [Presentation] リボソームによる栄養センシングと代謝制御 (2019)
  • Author(s): Yui Yamashita
  • Organizer: 第10回メタボローム勉強会
• [Presentation] 上部消化管癌におけるCirculating tumor DNA検査に関する検討 (2019)
  • Author(s): 岩谷 岳, 遠藤史隆, 千葉丈広, 八重樫瑞典, 佐々木教之, 佐藤慧, 秋山有史, 佐々木章, 西塚 哲
  • Organizer: 第119回日本外科学会定期学術集会
• [Presentation] 遺伝子増幅を制御する分子による抗癌剤耐性の克服 (2019)
  • Author(s): 南謙太朗
  • Organizer: 第11回トランスポーター研究会九州部会
• [Presentation] i-Gonad法を用いて、発生期大脳皮質の細胞外環境が細胞に与える影響を効率的に解析する (2019)
  • Author(s): 吉永怜史、本田岳夫、根本愛子、長谷川紘之、大石康二、久保健一郎、仲嶋一範
  • Organizer: 第125回日本解剖学会総会・全国学術集会
• [Presentation] オートファジーによる選択的なmRNA分解機構の解析 (2019)
  • Author(s): 牧野 支保
  • Organizer: 第12回オートファジー研究会
• [Presentation] Analysis of intronic region of PRKN in PD with heterozygous PRKN mutation. (2019)
  • Author(s): Kotaro Ogaki, Hirofumi Nakaoka, Kensuke Daida, Arisa Hayashida, Aya Ikeda, Yuanzhe Li, Hiroyo Yoshino, Manabu Funayama, Kenya Nishioka, Ituro Inoue, Nobutaka Hattori, Detection of genetic modifiers in parkin.
  • Organizer: 第13回パーキンソン病・運動障害疾患コングレス
• [Presentation] ゲノムからみた量的形質としてのこころ (2019)
  • Author(s): 権藤洋一
  • Organizer: 第13回生物学基礎論研究会
• [Presentation] 遺伝子座特異的ChIP法によるゲノム領域間相互作用の検出 (2019)
  • Author(s): 藤田敏次、藤井穂高
  • Organizer: 第13回日本エピジェネティクス研究会年会
• [Presentation] ファージと宿主菌のビッグデータ解析-Earth’s viromeデータの拡張とPromethIONの活用 (2019)
  • Author(s): 矢原耕史, Philippe Lehours, Filipa F. Vale, 平林亜希, 鈴木仁人, 鈴木穣
  • Organizer: 第14回ゲノム微生物学会
• [Presentation] 重症熱性血小板減少症候群ウイルスの核タンパク質Nと結合する宿主RNAの機能解明 (2019)
  • Author(s): 水間奎太, 松野啓太, 岡松正敏, 高田礼人, 迫田義博
  • Organizer: 第162回 日本獣医学会学術集会
• [Presentation] 放線菌Streptomyces griseusにおけるSigK-RskA制御系を介した光誘導機構 (2019)
  • Author(s): 長束 千尋, Salvatore Cosentino, 按田 瑞恵, 角 悟, 後藤 恭宏, 中村 佳司, 林 哲也, 岩崎 渉, 上田 賢志, 髙野 英晃
  • Organizer: 第18回微生物研究会
• [Presentation] シロオビアゲハの擬態に関わる色素の性状と生物的役割 (2019)
  • Author(s): 藤原晴彦、坂倉光祐、近藤勇介、来田村輔、西川英輝、依田真一、佐藤一輝、吉岡伸也
  • Organizer: 第20回構造色シンポジウム
• [Presentation] ゴールデンハムスターの雌性生殖細胞におけるPIWI-piRNAの機能解明 (2019)
  • Author(s): 石野響子、蓮輪英毅、塩見春彦
  • Organizer: 第21回日本RNA学会
• [Presentation] Dehydrocostus lactoneによるCajal Body消失機構の解析 (2019)
  • Author(s): Saki Ohazama, Hiroshi Maita, Shinichi Nakagawa
  • Organizer: 第21回日本RNA学会年会
• [Presentation] Autophagy-mediated selective mRNA degradation in yeast (2019)
  • Author(s): Shiho Makino
  • Organizer: 第21回日本RNA学会年会
• [Presentation] 核内ストレス体による2つのスプライシング制御機構 (2019)
  • Author(s): 二宮賢介
  • Organizer: 第21回日本RNA学会年会
• [Presentation] 細胞性粘菌オーガナイザーで働くIncRNA dutA及びdutA RNA結合タンパク質の機能解析. (2019)
  • Author(s): 嵯峨幸夏、橘高昂平、福澤雅志、川田健文
  • Organizer: 第21回日本RNA学会年会
• [Presentation] 細胞内ウイルスセンサーLGP2はRNAサイレンシングを介してウイルス感染細胞の細胞死を制御する (2019)
  • Author(s): 高橋朋子、中野悠子、尾野本浩司、米山光俊、程久美子
  • Organizer: 第21回日本RNA学会年会
• [Presentation] アカショウジョウバエのNeo性染色体におけるエピジェネティック・ランドスケープと遺伝子発現への影響 (2019)
  • Author(s): 青木 花織, 田村 浩一郎, 野澤 昌文
  • Organizer: 第21回日本進化学会
• [Presentation] アカショウジョウバエのNeo性染色体は性的拮抗を軽減するか (2019)
  • Author(s): ミノヴィッチ あに香, 田村 浩一郎, 野澤 昌文
  • Organizer: 第21回日本進化学会
• [Presentation] Interaction between gut microbial function and host metabolism in heart failure (2019)
  • Author(s): Tokiko Tabata, Tomohiro Hayashi, Tomoya Yamashita, Naofumi Yoshida, Yoshihiro Saito, Yasuhiro Irino, Ryuji Toh, Ken-ichi Hirata
  • Organizer: 第23回日本心不全学会学術集会
• [Presentation] DNAポリメラーゼ機能から見るヒト細胞でのゲノム複製機構 (2019)
  • Author(s): 小柳恵理, 吉藤郁弥, 荻朋男, 夏目豊彰, 鐘巻将人, 大学保一
  • Organizer: 第25回DNA複製・組換え・修復ワークショップ
• [Presentation] ゼニゴケゲノムのアップデートにまつわるetc. (2019)
  • Author(s): 谷澤靖洋, 矢倉勝, 望月孝子, 坂本美佳, 山岡尚平, 西浜竜一, Sean A. Montgomery, Chang Liu, Bence Galik, Frederic Berger, 大和勝幸, 河内孝之, 中村保一
  • Organizer: 第2回 植物インフォマティクス研究会
• [Presentation] 珪藻のゲノム解析支援 : ゲノムアセンブリからデータベース公開まで (2019)
  • Author(s): 坂本美佳, 望月孝子, 谷澤靖洋, 矢倉 勝, 谷藤 吾朗, 神川 龍馬, 中村 保一
  • Organizer: 第2回 植物インフォマティクス研究会
• [Presentation] Acquisition of Argonaute pelagic life style on the octopus genetic background (2019)
  • Author(s): Masa-aki Yoshida
  • Organizer: 第2回イカ・タコ研究会(東京大学大気海洋研究所共同研究集会)
• [Presentation] DNAポリメラーゼ機能のゲノムプロファイルから見る染色体複製システム (2019)
  • Author(s): 小柳恵理, 吉藤郁弥, 荻朋男, 夏目豊彰, 鐘巻将人, 大学保一
  • Organizer: 第37回染色体ワークショップ
• [Presentation] ゲノム編集によるカンプトテシン生合成経路関連ERF転写因子の機能解析 (2019)
  • Author(s): 蓬田梨那, 矢野亮介, Amit Rai, 刑部祐里子, 斉藤和季, 山崎真巳
  • Organizer: 第37回日本植物細胞分子生物学会
• [Presentation] Developmental stage-dependent change of SMADs target genes define the neural stem cell fate (2019)
  • Author(s): SAYAKO KATADA
  • Organizer: 第42回 日本分子生物学会
• [Presentation] Chemical approach to elucidate the regulatory mechanisms of snRNP biogenesis (2019)
  • Author(s): Hiroshi Maita, Saki Ohazama, Shinichi Nakagawa
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ゴールデンハムスターにおける卵細胞特異的なPIWIとpiRNAの発見 (2019)
  • Author(s): 石野響子、蓮輪英毅、塩見春彦
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Analysisi of epithelial-mesenchymal transition-activating transcription factor candidates in cancer cells. (2019)
  • Author(s): 寺島 農、石村 昭彦、西村 建徳、丹下 正一朗、鈴木 健之
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Homeostasis of S-adenosylmethionine (SAM) synthetase genes in C. elegans by alternative pre-mRNA splicing through m6A modification at the 3' spice site (2019)
  • Author(s): Shotaro Wani, Eichi Watabe, Yuma Ishigami, Marina Togo-Ohno, Tsutomu Suzuki, Hidehito Kuroyanagi
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] tRIP法による、RNA polymerase Ⅱによる転写中pre-mRNA上での、RNA-protein相互作用部位の同定 (2019)
  • Author(s): Akio Masuda, Toshihiko Kawachi, Junichi Takeda, Kinji Ohno
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] 皮膚表皮幹細胞の性質は体表領域により異なる (2019)
  • Author(s): 一條遼、佐田亜衣子、山本拓也、豊島文子
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] BHLHE41/DEC2によって遺伝子増幅は減少する (2019)
  • Author(s): 南謙太朗
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Essentiality of CENP-A conserved motif depends on CATD binding mode to HJURP (2019)
  • Author(s): Tetsuya Hori
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Interaction mode between CENP-A and HJURP in vitro (2019)
  • Author(s): Jinghui Cao, Tetsuya Hori
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] シロオビアゲハの擬態紋様形成はDsxを介した遺伝子ネットワークにより制御される (2019)
  • Author(s): 染谷逸樹、依田真一、飯島択郎、西川英輝、藤原晴彦
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ゼブラフィッシュ運動神経におけるBACE1活性の可視化 (2019)
  • Author(s): 鶴谷雅文、佐藤文規、田渕麻衣、川上浩一、瀬原淳子
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] 「セミバルク」RNA-Seq解析を用いた乳がん細胞微小環境の解析 (2019)
  • Author(s): 土屋 一成、永澤 慧、関 真秀、久世 裕太、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] DNA二重鎖切断を介さない変異ノックイン法 (2019)
  • Author(s): 兵頭寿典, Md Lutfur Rahman, 豊田敦, Sivasundaram Karnan, 太田明伸, 都築忍, 細川好孝, 小西裕之
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Functional analysis of autocrine LIF signaling in esophageal squamous cell carcinoma (2019)
  • Author(s): 谷口 浩二
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] HSATIII IncRNAによる2つのスプライシング制御機構 (2019)
  • Author(s): 二宮賢介
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] p53ファミリーによるES細胞の未分化状態制御 (2019)
  • Author(s): 山口新平
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Pan-cancer multi-omics modules networks construction by conservation of ranks correlations. (2019)
  • Author(s): Sarun Sereewattanawoot、鈴木 絢子、関 真秀、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ショウジョウバエ腸管損傷応答におけるtartan、capriciousの機能解析 (2019)
  • Author(s): 高山 倖輔、長井 広樹、倉田 祥一朗、矢野 環
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] トランスクリプトームモジュールによるがんの新規層別化 (2019)
  • Author(s): 鈴木 絢子、Sarun Sereewattanawoot、土原 一哉、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ナノポアシークエンサーを用いたがんゲノムにおける複雑な構造異常の同定 (2019)
  • Author(s): 坂本 祥駿、鈴木 絢子、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ナノポア型シークエンサーによる熱帯性マラリアのゲノムアセンブリ (2019)
  • Author(s): 金子 慶也、Lucky R. Runtuwene、Nguyen Thi Lan Anh、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] 個体成長を支えるショウジョウバエ共生酵母・共生細菌の栄養基盤の解析 (2019)
  • Author(s): 牟禮あゆみ
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] 神経回路形成における非ヘブ型神経可塑性機構 (2019)
  • Author(s): 竹内春樹、中嶋藍、伊原尚樹、池谷裕二
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ナノポアシークエンシングを用いた肺癌スプライシング異常の分析 (2019)
  • Author(s): 許 柳、岡 実穂、関 真秀、鈴木 絢子、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] マラリア感染に対する宿主免疫反応の細胞種レベルでのトランスクリプトーム解析 (2019)
  • Author(s): 吉武 にな、土屋 一成、Lucky Ronald Runtuwene、山岸 潤也、鈴木 穣
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] ニホンウズラにおける性分化関連遺伝子および新規性決定候補遺伝子の解析 (2019)
  • Author(s): 宮本淳太郎、奥野未来、伊藤武彦、水島秀成3、黒岩麻里
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] 線虫C. elegansのメカノレセプターDEG-1を介した低温耐性の温度情報伝達 (2019)
  • Author(s): 高垣菜式、太田茜、大西康平、水口洋平、豊田敦、久原篤
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] Rett症候群原因因子MeCP2はmiR-199aを介して神経幹細胞の分化運命決定を制御する (2019)
  • Author(s): 中嶋秀行、辻村啓太、入江浩一郎、今村拓也、中島欽一
  • Organizer: 第42回日本分子生物学会年会
• [Presentation] LGP2 enhances apoptosis mediated by TRBP-bound miRNAs during Sendai virus infection. (2019)
  • Author(s): Tomoko Takahashi, Mitsutoshi Yoneyama, Kumiko Ui-Tei
  • Organizer: 第48回日本免疫学会学術集会
• [Presentation] Unwinding of stem-loops by UPF1 licenses Regnase-1 to degrade inflammatory mRNAs (2019)
  • Author(s): Takashi Mino and Osamu Takeuchi
  • Organizer: 第48回日本免疫学会学術集会
• [Presentation] ゲノムワイド関連解析を用いたピロリ菌病原因子の検索 (2019)
  • Author(s): 松本昂, 山岡吉生
  • Organizer: 第51回九州微生物学研究会
• [Presentation] 染色体構造中における減数分裂期DSB形成機構 (2019)
  • Author(s): 山田貴富、太田邦史、村上浩士
  • Organizer: 第52回酵母遺伝学フォーラム研究報告会
• [Presentation] シス調節配列のモチーフ解析と共発現解析の統合によるカンプトテシン生合成候補遺伝子の探索 (2019)
  • Author(s): 林剛生, Amit Rai, 斉藤和季, 山崎真巳
  • Organizer: 第56回植物化学シンポジウム(株)常磐植物化学研究所創業70周年記念シンポジウム
• [Presentation] Detection of genetic modifiers in parkin (2019)
  • Author(s): Kotaro Ogaki, Hirofumi Nakaoka, Kensuke Daida, Arisa Hayashida, Aya Ikeda, Yuanzhe Li, Hiroyo Yoshino, Manabu Funayama, Kenya Nishioka, Ituro Inoue, Nobutaka Hattori. Detection of genetic modifiers in parkin.
  • Organizer: 第60回日本神経学会学術大会
• [Presentation] IgA腎症患者の口蓋扁桃陰窩におけるIgA結合細菌群と糖鎖不全IgA1 (2019)
  • Author(s): 山口浩毅、後藤 眞、山本 卓、金子佳賢、成田一衛
  • Organizer: 第62回日本腎臓学会学術総会
• [Presentation] 口腔内微生物と腎臓 (2019)
  • Author(s): 後藤 眞、山口浩毅、成田一衛
  • Organizer: 第62回日本腎臓学会学術総会
• [Presentation] Whole-genome cloning of Epstein-Barr virus strains from asymptomatically-infected individuals. (2019)
  • Author(s): Misako Yajima, Kazufumi Ikuta, Teru Kanda
  • Organizer: 第67回日本ウイルス学会 学術集会
• [Presentation] 重症熱性血小板減少症候群ウイルスの核タンパク質Nと結合する宿主RNAの機能解明 (2019)
  • Author(s): 水間 奎太、松野 啓太、岡松 正敏、高田 礼人、迫田 義博
  • Organizer: 第67回日本ウイルス学会学術集会
• [Presentation] Regnase-1による炎症性mRNA分解機構 (2019)
  • Author(s): 三野享史
  • Organizer: 第7 回CCR4-NOT研究会
• [Presentation] 様々なゲノム解析から見えてきたゲノムの不均一な多様性とその意義 (2019)
  • Author(s): 伊藤 武彦
  • Organizer: 第71回 日本細胞生物学会大会
• [Presentation] Acer palmatum樹皮からの未培養細菌の探索とAbditibacteriota門に属する新規微生物の全ゲノム解析 (2019)
  • Author(s): 小林和輝、青柳秀紀
  • Organizer: 第71回 日本生物工学会大会
• [Presentation] エタノール発酵能の違いは種の違い? 南極産担子菌酵母Mrakia blollopisの全ゲノム解析による種の再検討 (2019)
  • Author(s): 辻雅晴, 石原潤一, 高橋 弘喜, 野口 英樹
  • Organizer: 第71回 日本生物工学会大会
• [Presentation] 千葉県・西広および祇園原貝塚出土縄文人骨の集団ゲノム解析(第一報) (2019)
  • Author(s): 和久大介、覚張隆史、Guido M. Valverde、長岡朋人、平田和明、豊田敦、米田穣、高橋龍三郎、太田博樹
  • Organizer: 第73回日本人類学会大会(佐賀)
• [Presentation] The SFK-YAP pathway is a new potential therapeutic target in colorectal cancer (2019)
  • Author(s): 谷口 浩二
  • Organizer: 第78回日本癌学会学術総会
• [Presentation] 次世代リキッドバイオプシーのための新技術 (2019)
  • Author(s): 石井秀始、Chwee Teck Lim
  • Organizer: 第78回日本癌学会学術総会
• [Presentation] Epigenetic alterations by transient expression of HTLV-1 Tax in ATL cell (2019)
  • Author(s): 栗田大輔、安永純一朗、田中梓、松岡雅雄
  • Organizer: 第81回日本血液学会
• [Presentation] 新規3’遠位エンハンサーによる Irf8遺伝子発現と単核貪食細胞系分化のin vivoにおける制御 (2019)
  • Author(s): 佐々木 悠、西山 昭、村上 紘一、黒滝 大翼、関田 洋一、木村 透、田村 智彦
  • Organizer: 第81回日本血液学会学術集会
• [Presentation] The RIG-I like receptor LGP2 enhances apoptosis mediated by TRBP-bound miRNAs during viral infection. (2019)
  • Author(s): 高橋朋子、中野悠子、米山光俊、尾野本浩司、程久美子
  • Organizer: 第8回感染症研究グローバルネットワークフォーラム
• [Presentation] DEAD-box RNA ヘリカーゼをコードするシロイヌナズナSMN2/HEN2は抵抗性遺伝子SMN1/RPS6の機能に必須である (2019)
  • Author(s): 市村和也, 高木桃子, 岩本直樹, 久保佑太, 森本貴行, 萩藤孝輔, 高木宏樹, 高橋史憲, 篠崎一雄, 上中弘典, 田中啓介, 太治輝昭, 秋光和也, 寺内良平, 白須賢
  • Organizer: 第8回植物RNAネットワークシンポジウム
• [Presentation] シロイヌナズナのポリA分解酵素AtCCR4a/4bによるバイオマス制御 (2019)
  • Author(s): 徳中 琢
  • Organizer: 第8階植物RNA研究ネットワークシンポジウム
• [Presentation] イトマキヒトデのモデル生物化に向けて～イトマキヒトデのゲノム構築～ (2019)
  • Author(s): 伊藤 武彦, 梶谷 嶺, 奥野 未来, 田中 裕之, 豊田 敦, 立花 和則, 岸本 健雄
  • Organizer: 第90回 日本動物学会
• [Presentation] エミューゲノムの構築と比較解析による古顎類の性染色体進化の解明 (2019)
  • Author(s): 奥野 未来, 梶谷 嶺, 田中 裕之, 水島 秀成, 黒岩 麻里, 伊藤 武彦
  • Organizer: 第90回 日本動物学会
• [Presentation] シロオビアゲハにおけるメス限定ベイツ型擬態の分子機構 (2019)
  • Author(s): 依田真一、飯島択郎、坂倉光祐、西川英輝、藤原晴彦
  • Organizer: 第90回日本動物学会 シンポジウム : 鱗翅目昆虫の動物学とその広がり
• [Presentation] アカショウジョウバエのNeo性染色体におけるクロマチン修飾の進化 (2019)
  • Author(s): 青木 花織, 田村 浩一郎, 野澤 昌文
  • Organizer: 第91回日本遺伝学会
• [Presentation] 性染色体化が遺伝子発現に及ぼす影響-アカショウジョウバエのNeo性染色体を例に- (2019)
  • Author(s): ミノヴィッチ あに香, 田村 浩一郎, 野澤 昌文
  • Organizer: 第91回日本遺伝学会
• [Presentation] ヘリコバクター・ピロリ ; 病原性と人類との共移動 (2019)
  • Author(s): 山岡吉生
  • Organizer: 第92回日本細菌学会総会
• [Presentation] ゲノムワイドCRISPRスクリーニングによる一次繊毛解体・細胞周期再エントリー制御因子の同定 (2019)
  • Author(s): 黒木花菜子
  • Organizer: 第92回日本生化学会大会
• [Presentation] 神経系によるショウジョウバエ腸管免疫制御機構 (2019)
  • Author(s): 石橋謙太朗, 鈴木拓朗, 布施直之, 倉田祥一朗
  • Organizer: 第92回日本生化学会大会
• [Presentation] 発熱植物ザゼンソウにおけるtrans-resveratrol di-O-methyltransferaseに関する研究 (2019)
  • Author(s): 谷本 悠、梅川 結、伊藤 菊一
  • Organizer: 第92回日本生化学会大会
• [Presentation] 発熱植物ザゼンソウの無益回路に関する研究 (2019)
  • Author(s): 後藤 広太、梅川 結、伊藤 菊一
  • Organizer: 第92回日本生化学会大会
• [Presentation] 防御関連遺伝子発現における核RNA品質管理機構関連因子SOP1の関与 (2019)
  • Author(s): 萩藤孝輔, 髙木桃子, 秋光和也, 市村和也
  • Organizer: 中国四国植物学会第76回大会
• [Presentation] 神経線維腫症2型(NF2)関連聴神経腫瘍に伴う長期聴力予後成績と遺伝子解析に基づいた聴力予後予測 (2019)
  • Author(s): 寺西裕、宮脇哲、本郷博貴、堂福翔吾、岡野淳、髙柳俊作、中冨浩文、斉藤延人
  • Organizer: 聴神経腫瘍研究会
• [Presentation] ゲノムワイドCRISPR-Cas9スクリーニングによる中心体-微小管ネットワーク制御因子の網羅的同定 (2019)
  • Author(s): 竹田穣
  • Organizer: 東京大学生命科学シンポジウム
• [Presentation] 重力屈性が野生型と逆になるヒメツリガネゴケ突然変異体gtr2の単離 (2019)
  • Author(s): 逵ローレンスかおる, 小針寛乃, 大塚沙穂子, 日渡祐二
  • Organizer: 東北植物学会第9回大会
• [Presentation] Neatl lncRNA KO マウスの表現型解析 (2019)
  • Author(s): 戸谷 ひかる、屋中 香織、戸田 知得、岡松 優子、中川 真一
  • Organizer: 日本RNA学会
• [Presentation] CRISPR/Cas9 nickaseによるサイレント変異不要のノックイン (2019)
  • Author(s): 兵頭寿典, Md Lutfur Rahman, 豊田敦, Sivasundaram Karnan, 太田明伸, 都築忍, 細川好孝, 小西裕之
  • Organizer: 日本ゲノム編集学会第4回大会
• [Presentation] DNAポリメラーゼ合成プロファイルを用いたヒト細胞における複製開始反応の定量的解析 (2019)
  • Author(s): 吉藤郁弥, 小柳恵理, 荻朋男, 夏目豊彰, 鐘巻将人, 大学保一
  • Organizer: 日本遺伝学会91回大会
• [Presentation] セントロメア特異的に転移するレトロトランスポゾンTallの挿入領域のロングリードシーケンスによる解析 (2019)
  • Author(s): 塚原小百合、加藤夏恵、河邊昭、豊田敦、角谷徹仁
  • Organizer: 日本遺伝学会第91回大会
• [Presentation] ゲノムワイドな遺伝子間相互作用の検出と解析法の開発 (2019)
  • Author(s): 権藤洋一
  • Organizer: 日本遺伝学会第91回大会
• [Presentation] アカショウジョウバエの低温耐性を明らかにする“Evolve & Resequence” (2019)
  • Author(s): 近藤朋希, 田中健太郎, 田村浩一郎
  • Organizer: 日本遺伝学会第91回大会
• [Presentation] ホウレンソウの性決定候補遺伝子の探索 (2019)
  • Author(s): 長部高之, 岩渕恵佑, 平川英樹, 鈴木穣, 小野寺康之
  • Organizer: 日本育種学会 第136回講演会
• [Presentation] Spinacia属における性決定候補遺 伝子の探索および構造解析 (2019)
  • Author(s): 岡崎洋助, 平川英樹, 小野 寺康之
  • Organizer: 日本育種学会・日本作物学会 北海道談話会
• [Presentation] ホウレンソウ性決定候補遺伝子の発現解析 (2019)
  • Author(s): 須藤有紀, 長部高之, 平川 英樹, 鈴木穣, 小野寺康之
  • Organizer: 日本育種学会・日本作物学会 北海道談話会
• [Presentation] 接合藻ヒメミカヅキモにおける生殖様式の進化 : 有性生殖関連遺伝子の系統間比較 (2019)
  • Author(s): 川口也和子, 土金勇樹, 田中啓介, 太治輝昭, 豊田敦, 西山智明, 関本弘之, 土松隆志
  • Organizer: 日本植物学会
• [Presentation] ボルボックス系列緑藻における多細胞形質の平行進化の分子基盤の解明に向けて (2019)
  • Author(s): 山下翔大、数口敦紀、山本荷葉子、松﨑令、野口英樹、水口洋平、豊田敦、河地正伸、廣野雅文、関本弘之、野崎久義
  • Organizer: 日本植物学会第83回大会
• [Presentation] 卵生殖ボルボックス性染色体領域の拡大 (2019)
  • Author(s): 山本荷葉子、浜地貴志、豊岡博子、野口英樹、水口洋平、豊田敦、野崎久義
  • Organizer: 日本植物学会第83回大会
• [Presentation] アストレフォメネの多細胞形質進化の解明に向けた新規ゲノムと形質転換の確立 (2019)
  • Author(s): 山下翔大、数口敦紀、山本荷葉子、松﨑令、野口英樹、水口洋平、豊田敦、河地正伸、廣野雅文、関本弘之、野崎久義
  • Organizer: 日本植物形態学会第31回大会
• [Presentation] ボルボックスにおける性染色体領域の進化 (2019)
  • Author(s): 山本荷葉子、浜地貴志、豊岡博子、野口英樹、水口洋平、豊田敦、野崎久義
  • Organizer: 日本植物形態学会第31回大会
• [Presentation] 接合藻ヒメミカヅキモにおける生殖様式の平行進化 : 全ゲノムデータから探る (2019)
  • Author(s): 川口也和子, 土金勇樹, 田中啓介, 太治輝昭, 豊田敦, 西山智明, 関本弘之, 土松隆志
  • Organizer: 日本進化学会
• [Presentation] “Evolve & Resequence” for cold tolerance in Drosophila albomicans (2019)
  • Author(s): 近藤朋希, 田中健太郎, 田村浩一郎
  • Organizer: 日本進化学会第21回大会
• [Presentation] Whole genome comparisons of Drosophila albomicans populations from Taiwan and Japan (2019)
  • Author(s): Luleciogle S, Ogawa Y, Tamura K
  • Organizer: 日本進化学会第21回大会
• [Presentation] Genetic factor which aggravates hyperuricemia into gout was identified by genome-wide association study (2019)
  • Author(s): Yusuke Kawamura, Hirofumi Nakaoka, Akiyoshi Nakayama, Yukinori Okada, Ken Yamamoto, Hiroshi Ooyama, Shimizu Seiko, Mayuko Nakajima, Takahiro Nakamura, Masahiro Nakatochi, Mitsuhiro Yokota, TakadaTappei, Kamatani Yoichiro, Takahashi Atushi, Kenji Wakai, Michiaki Kubo, Kimiyoshi Ichida, Inoue Ituro, Nariyoshi Shinomiya, Hirotaka Matsuo
  • Organizer: 日本人類遺伝学会第64回大会
• [Presentation] 神経系によるショウジョウバエ腸管免疫制御機構 (2019)
  • Author(s): 石橋謙太朗, 鈴木拓朗, 布施直之, 倉田祥一朗
  • Organizer: 日本生化学会東北支部第85回例会
• [Presentation] 研究と向き合って～植物樹皮からの未培養微生物の探索研究について～ (2019)
  • Author(s): 小林和輝
  • Organizer: 日本生物工学会 東日本支部 2019年(令和元年)度 高校生セミナー
• [Presentation] マダラシミ Thermobia domesticaの脂肪体と卵巣における性分化遺伝子transformerとdoublesexの発現解析 (2019)
  • Author(s): 千頭康彦・新美輝幸
  • Organizer: 日本節足動物発生学会 第55回大会
• [Presentation] カブトムシの角形成を制御する遺伝子制御ネットワークの解析 (2019)
  • Author(s): 森田慎一・新美輝幸
  • Organizer: 日本動物学会 第90回大会
• [Presentation] 無翅昆虫類マダラシミにおけるdoublesexアイソフォームの機能解析 (2019)
  • Author(s): 千頭康彦・新美輝幸
  • Organizer: 日本動物学会 第90回大会
• [Presentation] 共生細菌がつくるカロテノイド色素を利用したカメムシの体色形成 (2019)
  • Author(s): 森山実、深津武馬
  • Organizer: 日本動物学会第90回大会
• [Presentation] トンボの体色多型と性分化 (2019)
  • Author(s): 二橋亮
  • Organizer: 日本動物学会第90回大阪大会
• [Presentation] 神経線維腫症2型(NF2)関連聴神経腫瘍に伴う長期聴力予後成績と遺伝子解析に基づいた聴力予後予測 (2019)
  • Author(s): 寺西裕、宮脇哲、本郷博貴、堂福翔吾、岡野淳、高柳俊作、中冨浩文、斉藤延人
  • Organizer: 日本脳腫瘍の外科学会
• [Presentation] 「クテドノバクテリア(綱)」クテドノバクテリアDictyobacter aurantiacus S27株の形態分化とゲノム及び二次代謝の特徴 (2019)
  • Author(s): 鄭 宇、王 瓊渼、齋藤 彩菜、酒井 康輝、阿部 敬悦、横田 明、矢部 修平
  • Organizer: 日本農芸化学会2019年度大会
• [Presentation] Linking seasonal dynamics of Megaviridae and bloom forming eukaryotic phytoplankton in Uranouchi inlet, Japan (2019)
  • Author(s): Prodinger F., Endo H., Li Y., Tominaga K., Isozaki T., Gotoh Y., Yoshida T., Ogata H.
  • Organizer: 日本微生物生態学会 第33回大会
• [Presentation] 従属栄養細菌との相互作用を介した硝化菌の増殖促進機構 (2019)
  • Author(s): 井出寛人, 石井拳人, 藤谷拓嗣, 常田聡
  • Organizer: 日本微生物生態学会第33回大会
• [Presentation] パルマ藻・珪藻の祖先的形質の解明に向けた比較ゲノム解析 (2019)
  • Author(s): 伴 広輝、Blanc-Mathieu Romain、桑田 晃、佐藤晋也、吉川伸哉、一宮睦雄、緒方博之
  • Organizer: 日本微生物生態学会第33回大会
• [Presentation] 細胞ごとに増殖速度のばらつきが大きいアンモニア酸化細菌のしなやかな生存戦略 (2019)
  • Author(s): 一色 理乃, 藤谷 拓嗣, 田中 大器, 関口 哲志, 常田 聡
  • Organizer: 日本微生物生態学会第33回大会
• [Presentation] 神経線維腫症2型(NF2)の網羅的遺伝子解析によって明らかになった多様な臨床的・遺伝的背景 (2019)
  • Author(s): 寺西裕、宮脇哲、本郷博貴、堂福翔吾、岡野淳、高柳俊作、中冨浩文、斉藤延人
  • Organizer: 日本分子脳神経外科学会
• [Presentation] Mutation spectrum in the genome of offspring derived from irradiated mouse spermatogonia and mature oocytes (2019)
  • Author(s): Yasunari Satoh, Mayumi Nishimura, Tony Kuo, Norio Shinkai, Harry M. Cullings, Yohei Minakuchi, Jun Sese, Atsushi Toyoda, Yoshiya Shimada, Nori Nakamura, Arikuni Uchimura
  • Organizer: 日本放射線影響学会第62回大会
• [Presentation] 遺伝子解析による機能予後予測と長期機能予後成績に基づいた神経線維腫症2型(NF2)関連腫瘍に対する治療計画の検討 (2019)
  • Author(s): 寺西裕、宮脇哲、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、斉藤延人
  • Organizer: 脳神経外科学会総会
• [Presentation] ブリ属の性決定領域ゲノム配列比較 (2019)
  • Author(s): 小山喬・車遥介・菊池潔・森島輝・豊田敦
  • Organizer: 平成30年度日本水産学会春季大会
• [Presentation] Ancient genome analyses show peopling history of East Asians
• [Book] 「化学工業」2020年4月号「注目される最先端相分離研究」 (2020)
  • Author(s): 二宮賢介, 廣瀬哲郎
  • Pages: 223-232
  • Total Pages: 86
  • Publisher: 化学工業社
• [Book] 新しい臨床を開拓するための分子循環器病学 (2019)
  • Author(s): 山下智也、平田健一
  • Pages: 174-180
  • Total Pages: 210
  • Publisher: 南山堂
• [Book] 医学の歩み (2019)
  • Author(s): 助川桃枝・王 丹*
  • Pages: 811-812
  • Total Pages: 70
  • Publisher: 医歯薬出版株式会社
• [Book] 実験医学増刊「脳の半分を占めるグリア細胞～脳と心と体をつなぐ“膠”」 (2019)
  • Author(s): 後藤昂宏、表伯俊、川口大地
  • Pages: 14
  • Total Pages: 228
  • Publisher: 羊土社
• [Book] 鳥の糞から柑橘類の葉へ-アゲハ幼虫の変身を制御する遺伝子の発見 (2019)
  • Author(s): 藤原晴彦
  • Publisher: Academist Jorunal
• [Book] 生命誌 年刊号 vol. 96-99 「容 いれる ゆるす」 (2019)
  • Author(s): 千葉 親文
  • Pages: 121-123
  • Total Pages: 221
  • Publisher: 新曜社
• [Book] 次世代シークエンサーDRY解析教本 改訂第2版 (2019)
  • Author(s): 谷澤靖洋、中村保一
  • Pages: 246-273
  • Total Pages: 384
  • Publisher: 学研プラス
• [Book] Methods in Molecular Biology, Gene Prediction (2019)
  • Author(s): Yasuhiro Tanizawa, Takatomo Fujisawa, Masanori Arita, Yasukazu Nakamura
  • Pages: 215-226
  • Total Pages: 284
  • Publisher: Springer Nature.
• [Book] シングルセルゲノミクスのプラットフォーム、実験医学増刊 Vol.37 No.20 シングルセルゲノミクス～組織の機能、病態が1細胞レベルで見えてきた! (2019)
  • Author(s): 関真秀、土屋一成、鹿島幸恵、鈴木絢子、鈴木穣
  • Pages: 3336-3344
  • Total Pages: 219
  • Publisher: 羊土社
• [Book] もっとよくわかる! 腸内細菌叢～健康と疾患を司る“もう1つの臓器”(実験医学別冊 もっとよくわかる! シリーズ) (2019)
  • Author(s): 中村祐哉、山田拓司(福田真嗣 編集)
  • Pages: 107-111
  • Total Pages: 147
  • Publisher: 羊土社
• [Book] Gene Prediction Methods and Protocols (2019)
  • Author(s): Tanizawa Y, Fujisawa T, Arita M, Nakamura Y.
  • Pages: 215-226
  • Total Pages: 283
  • Publisher: Humana, New York, NY
• [Remarks] 領域ホームページ
  • URL: https://www.genome-sci.jp/
• [Remarks] ロングリード向けアラインメントツール minialign
  • URL: https://github.com/ocxtal/minialign
• [Remarks] シークエンサーのリードデータからその個性を学習するLAST-TRAIN
  • URL: http://last.cbrc.jp/doc/last-train.html
• [Remarks] 相同染色体を「分けて」アセンブル出力するゲノムアセンブラPlatanus-allee
  • URL: http://platanus.bio.titech.ac.jp/platanus2
• [Remarks] 高速アラインメントライプラリ libgaba
  • URL: https://github.com/ocxtal/libgaba
• [Remarks] 複数サンプル間の発現差解析ツールDEclust
  • URL: http://www.dna.bio.keio.ac.jp/software/DEclust/
• [Remarks] 超高速RNA-RNA相互作用予測ツールRIblast
  • URL: https://github.com/fukunagatsu/RIblast
• [Remarks] RNA構造解析ウェブサーバーRtools
  • URL: http://rtools.cbrc.jp/
• [Remarks] 染色体大規模構造変異高精度検出アルゴリズムCOSMOS
  • URL: http://seselab.org/cosmos/
• [Remarks] ショートリードからタンデムリピートを検出するソフトウエアTRhist
  • URL: http://trhist.gi.k.u-tokyo.ac.jp/
• [Remarks] 高速オルソログ同定プログラムSonicParanoid
  • URL: http://iwasakilab.bs.s.u-tokyo.ac.jp/sonicparanoid/
• [Remarks] 非コードRNAクラスタリングツールCNNclust
  • URL: http://www.dna.bio.keio.ac.jp/cnn/
• [Remarks] 連続2塩基の特性を考慮したDNAモチーフ検出ソフトウエアDIpartite
  • URL: https://github.com/Mohammad-Vahed/Dipartite
• [Remarks] PacBio sequencingを用いてアレル特異的メチル化を推定するアルゴリズムとソフトウエアAgIn
  • URL: https://github.com/hacone/AgIn
• [Remarks] DFASTバックグラウンドアノテーションエンジン
  • URL: https://github.com/nigyta/dfast_core
• [Remarks] 微生物ゲノムアノテーションパイプラインDFAST
  • URL: https://dfast.nig.ac.jp/
• [Remarks] 簡易型微生物ゲノムアノテーションパイプラインL-MiGAP
  • URL: https://www.migap.org/
• [Remarks] ヒトゲノム解析パイプライン
• [Remarks] ロングリード向けシークエンシングエラー訂正・アセンブリパイプラインSprai
  • URL: http://zombie.cb.k.u-tokyo.ac.jp/sprai/
• [Remarks] iPath3.0 : interactive pathways explorer v3
  • URL: https://pathways.embl.de/
• [Remarks] メタ16S・メタゲノム解析の系統組成推定・描画ツールVITCOMIC2
  • URL: http://vitcomic.org/
• [Remarks] オミクスデータ可視化のためのwebアプリケーションFunctree2.0
  • URL: https://bioviz.tokyo/functree2/
• [Remarks] 環境から微生物を、微生物から環境を予測するツールLEA
  • URL: http://leamicrobe.jp/
• [Remarks] MoMI-G : グラフゲノムブラウザ
  • URL: https://github.com/MoMI-G/MoMI-G
• [Remarks] ゼニゴケゲノムデータベース MarpolBase
  • URL: http://marchantia.info/
• [Remarks] IncRNA-RNA相互作用予測ウェブサーバーLncRRIsearch
  • URL: http://rtools.cbrc.jp/LncRRIsearch/
• [Remarks] 植物を対象としたDNA多型データベースDNAPod
  • URL: http://tga.nig.ac.jp/dnapod/
• [Remarks] メダカゲノムデータベースMedaka Genome version 2.2.4
  • URL: http://utgenome.org/medaka_v2/#!Top.md
• [Remarks] 統計解析ソフトウェアSurvival LAMP
  • URL: https://rtrelator.github.io/SurvivalLAMP/
• [Remarks] 変異解析結果の信頼性を評価するソフトウェア EAGLE
  • URL: https://github.com/tony-kuo/eagle
• [Remarks] ホメオログを高精度に分けた遺伝子発現を観測するEAGLE-RC
  • URL: https://github.com/tony-kuo/eagle
• [Remarks] Nanoporeシーケンシング実行時に標的配列を選択的に増幅するソフトウエアdyss
  • URL: https://bitbucket.org/ban-m/dyss
• [Remarks] PacBio read simulator PBSIM
  • URL: https://code.google.com/archive/p/pbsim/