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2020 Fiscal Year Annual Research Report

先進ゲノム解析研究推進プラットフォーム

Research Project

Project/Area Number 16H06279
Research InstitutionNational Institute of Genetics

Principal Investigator

小原 雄治  国立遺伝学研究所, 先端ゲノミクス推進センター, 特任教授

Project Period (FY) 2016 – 2021
Keywords次世代DNAシーケンサー / 新規ゲノム配列決定 / リシーケンシング / エピゲノム / RNA-Seq / 1細胞解析 / メタゲノム解析 / スーパーコンピューター
Outline of Annual Research Achievements

①総括支援活動では、応募の機会増加の要望に応えるため今年度から年2回の公募とした。その結果、合計466の応募課題があり、207課題(44%)を採択した。コロナ禍の影響の中、昨年度より応募数は100件近く増加したが、支援内容の精査や支援経費の限度額設定等により、40%超の採択率を維持した。審査委員はすべてプラットフォーム外の専門家とし、評価が同程度の場合は若手、女性、少額科研費からの課題、初めての応募課題を優先した。支援課題は科研費生物系のほぼすべての分野に渡っており、支援の成果を含む論文として2020年度に161報が発表された。この中には「単核貪食細胞系の分化における遺伝子発現制御機構の包括的解明」(Nature Immunol.)、「キンギョの変異体の表現型多様性を作り上げる分子機構の理解」(Current Biol.)、「植物二次代謝経路のゲノム進化に学ぶ生合成デザイン」(Nature Comm.)など広い分野でのレベルの高い成果が含まれている。拡大班会議や情報解析講習会はオンサイト開催が必要なためにコロナ禍の中で見送ったが、WEB開催としたヒトゲノム研究倫理を考える会は5回開催し、各回約500名が参加した。
②大規模配列解析拠点ネットワーク支援活動においては、最先端技術を支援に提供するとともに、染色体レベルの高精度ゲノム配列決定、シングルセル・空間遺伝子発現解析等の支援技術高度化を進めた。
③高度情報解析支援ネットワーク活動では、支援から浮かび上がった課題を解決するソフトウェアの開発を進め、実際の課題への適用を進めた。2020年度には、超高速相同性検索ソフトウェアPZLASTの開発、Hi-Cデータを使ったゲノムアセンブリソフトウエア、ロングリードシミュレータPBSIM2の開発などを進め、②と合わせて24報の論文を発表した。

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

・応募の機会増加が懸案であったが、今年度から年2回の公募を行うことができた。前年度に比べ応募数は100件近く増加し、また支援希望内容も拡大しているが、経費上限の設定や支援内容精査などにより採択率を40%以上に維持することができた。科研費のほぼ全種目から課題採択できており、同程度の評価の場合は若手・女性・少額科研費からの課題及び新たな申請者を優先するなどの措置をとり、多様な課題への支援ができた。選考の過程では、コロナ禍のために審査委員会や支援候補課題のヒアリングなどすべてオンラインで行ない、結果的に双方の負担を減らすことができた。
・コロナ禍のために試料送付の遅れや、支援拠点側の出勤抑制などが見られ、支援の遅れも生じたが、おおむね期間内に支援を完了できた。支援依頼者から要望が高かった拡大班会議と情報解析講習会はオンサイト開催が必要なために見送らざるを得なかったが、支援依頼者が自力で解析できるように解析パイプライン整備を進め支援に供した。
・支援成果を含む論文発表は2020年度は161報と順調に増加した。支援技術の高度化のための活動も大規模DNAシーケンシング支援、高度情報解析支援共に進めることができ、高度化の論文は24報発表した。また情報解析講習会内容をまとめた書籍を刊行し、好評を得ている。
・これらの活動を、当初計画通り国立遺伝学研究所を中核機関として、参加する班員が所属する主な機関を連携機関とする連携ネットワークを形成して進めることができた。

Strategy for Future Research Activity

最終年度になるので、次期体制につながるように以下の方策を進める
・最先端の技術の提供のために、支援拠点における支援技術の高度化を引き続き進める。ゲノム解析は技術進展のスピードが特に速く、2-3年で解析手法が様変わりするために、支援に確実に使われる場合は、最終年度であっても支援機器・技術の整備を工夫して進めていく。
・支援課題の採択率は、現状は予算の制限から40%台にとどまっており、より多い課題の支援が求められる。現状では、各支援課題の支援経費の上限を設けて、これを超す分は経費負担を求める形にすることで、ようやくこの採択率になっている。解析内容を精査する効果はあるが、一方でゲノム解析においては一定規模以上で支援しないと意味のある結果が出ないことも多く、若手をはじめ、経費面で敷居が高くなるケースもある。そのためにも技術高度化により、より効果的な解析技術の整備やコスト削減を図っていく必要がある。他方で、ピーク研究支援を考慮して、よりタイムリーな支援のために、支援経費自己負担で随時応募可能とする制度を整備し、ピーク作りとすそ野拡大のバランスを図る。
・大量データ解析の支援要望はますます増加していることから、解析パイプラインの整備とともに、情報解析講習会の開催を継続拡充する。また、ゲノム解析の感覚を研究者コミュニティに共有してもらうためにも、拡大班会議は重要であり、今後工夫して進めていきたい。また、実際のデータをもとに高度情報解析を行える稀な場であることから、若手の参画やon the job trainingなどを通じてインフォマティックス人材育成を継続する。また、支援で得られたデータの適切な共有/公開を進める。このために支援で得られたヒトゲノムデータはNBDCヒトゲノムDBへの格納が確実になるようにする。ヒトゲノム以外のDNA配列データはDDBJへまず格納し、そこからデータ回収してもらう方式により確実なデータ格納を進める。

  • Research Products

    (482 results)

All 2021 2020 Other

All Int'l Joint Research (6 results) Journal Article (192 results) (of which Int'l Joint Research: 43 results,  Peer Reviewed: 185 results,  Open Access: 154 results) Presentation (260 results) (of which Int'l Joint Research: 34 results,  Invited: 84 results) Book (14 results) Remarks (8 results) Patent(Industrial Property Rights) (2 results) (of which Overseas: 2 results)

  • [Int'l Joint Research] Baylor College of Medicine/NIH/Duke University School of Medicine(U.S.A.)

    • Country Name
      U.S.A.
    • Counterpart Institution
      Baylor College of Medicine/NIH/Duke University School of Medicine
    • # of Other Institutions
      6
  • [Int'l Joint Research] The University of Queensland/Australian Institute of Marine Science/Commonwealth Scientific and Industrial Research Organisation (CSIRO)(Australia)

    • Country Name
      Australia
    • Counterpart Institution
      The University of Queensland/Australian Institute of Marine Science/Commonwealth Scientific and Industrial Research Organisation (CSIRO)
    • # of Other Institutions
      2
  • [Int'l Joint Research] Universitas Airlangga/Universitas Muhammadiyah Surabaya/University of Indonesia(Indonesia)

    • Country Name
      Indonesia
    • Counterpart Institution
      Universitas Airlangga/Universitas Muhammadiyah Surabaya/University of Indonesia
    • # of Other Institutions
      2
  • [Int'l Joint Research] Max Planck Institute of Molecular Cell Biology and Genetics/Helmholtz Center for Infection Research (HZI)/University of Wurzburg(Germany)

    • Country Name
      Germany
    • Counterpart Institution
      Max Planck Institute of Molecular Cell Biology and Genetics/Helmholtz Center for Infection Research (HZI)/University of Wurzburg
    • # of Other Institutions
      1
  • [Int'l Joint Research] MRC London Institute of Medical Sciences (LMS)/University of Cambridge/University of Nottingham(UNITED KINGDOM)

    • Country Name
      UNITED KINGDOM
    • Counterpart Institution
      MRC London Institute of Medical Sciences (LMS)/University of Cambridge/University of Nottingham
    • # of Other Institutions
      1
  • [Int'l Joint Research]

    • # of Other Countries
      23
  • [Journal Article] Regulatory mechanism underlying plant tip growth inferred from conchocelis growth of the red alga Neopyropia yezoensis2021

    • Author(s)
      Mizuho Shimada, Nagisa Takada, Yuji Hiwatashi
    • Journal Title

      Algal Resources

      Volume: 13 Pages: 33-39

    • DOI

      10.20804/jsap.13.2_33

    • Peer Reviewed / Open Access
  • [Journal Article] Comparative analysis using the draft genome sequence of California poppy (Eschscholzia californica) for exploring the candidate genes involved in benzylisoquinoline alkaloid biosynthesis2021

    • Author(s)
      Yasuyuki Yamada, Hideki Hirakawa, Kentaro Hori, Yohei Minakuchi, Atsushi Toyoda, Nobukazu Shitan, Fumihiko Sato
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 85 Pages: 851-859

    • DOI

      10.1093/bbb/zbaa091

    • Peer Reviewed / Open Access
  • [Journal Article] Collective nuclear behavior shapes bilateral nuclear symmetry for subsequent left-right asymmetric morphogenesis in Drosophila2021

    • Author(s)
      Dongsun Shin, Mitsutoshi Nakamura, Yoshitaka Morishita, Mototsugu Eiraku, Tomoko Yamakawa, Takeshi Sasamura, Masakazu Akiyama, Mikiko Inaki, Kenji Matsuno
    • Journal Title

      Development

      Volume: 148 Pages: dev198507.

    • DOI

      10.1242/dev.198507

    • Peer Reviewed / Open Access
  • [Journal Article] A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits.2021

    • Author(s)
      Hideki Hirakawa, Atsushi Toyoda, Takehiko Itoh, Yutaka Suzuki, Atsushi J. Nagano, Suguru Sugiyama, Yasuyuki Onodera
    • Journal Title

      DNA Research

      Volume: 28 Pages: dsab004.

    • DOI

      10.1093/dnares/dsab004

    • Peer Reviewed / Open Access
  • [Journal Article] Setdla plays pivotal roles for the survival and proliferation of retinal progenitors via histone modifications of Uhrfl2021

    • Author(s)
      Xiaoyue Deng, Toshiro Iwagawa, Masaya Fukushima, Yutaka Suzuki3, and Sumiko Watanabe
    • Journal Title

      IOVS

      Volume: 62 Pages: 1

    • DOI

      10.1167/iovs.62.6.1

    • Peer Reviewed / Open Access
  • [Journal Article] “Candidatus Mesenet longicola” : Novel Endosymbionts of Brontispa longissima that Induce Cytoplasmic Incompatibility2021

    • Author(s)
      Shun-ichiro Takano, Yasuhiro Gotoh & Tetsuya Hayashi
    • Journal Title

      Microbial Ecology

      Volume: 82 Issue: 2 Pages: 512-522

    • DOI

      10.1007/s00248-021-01686-y

    • Peer Reviewed / Open Access
  • [Journal Article] The full mitochondrial genome sequence of the greater argonaut Argonauta argo (Cephalopoda, Argonautoidea) and its phylogenetic position in Octopodiformes2021

    • Author(s)
      Kazuki Hirota, Masa-aki Yoshida, Takehiko Itoh, Atsushi Toyoda, Davin H. E. Setiamarga
    • Journal Title

      Mitochondrial DNA Part B : Resources

      Volume: 6 Pages: 1451-1453

    • DOI

      10.1080/23802359.2021.1911710

    • Peer Reviewed / Open Access
  • [Journal Article] Liquid Biopsy Cell-free DNA Biomarkers in Patients With Oligometastatic Colorectal Cancer Treated by Ablative Radiotherapy2021

    • Author(s)
      MASAKI NAKAMURA, SHUN-ICHIRO KAGEYAMA, MASAHIDE SEKI, AYAKO SUZUKI, MASAYUKI OKUMURA, HIDEHIRO HOJO, ATSUSHI MOTEGI, TETSUO AKIMOTO
    • Journal Title

      Anticancer Research

      Volume: 41 Pages: 829-834

    • DOI

      10.21873/anticanres.14835

    • Peer Reviewed / Open Access
  • [Journal Article] Decoding the transcriptome of pre-granulosa cells during the formation of primordial follicles in the mouse2021

    • Author(s)
      Kurumi Fukuda, Masafumi Muraoka, Yuzuru Kato, Yumiko Saga
    • Journal Title

      Biology of Reproduction

    • DOI

      10.1093/biolre/ioab065

    • Peer Reviewed
  • [Journal Article] Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population2021

    • Author(s)
      Satomi Mitsuhashi, Martin C. Frith, Naomichi Matsumoto
    • Journal Title

      BMC Medical Genomics

      Volume: 14

    • DOI

      10.1186/s12920-020-00853-3

    • Peer Reviewed / Open Access
  • [Journal Article] MCM10 compensates for Myc-induced DNA replication stress in breast cancer stem-like cells2021

    • Author(s)
      Takahiko Murayama, Yasuto Takeuchi, Kaoru Yamawaki, Toyoaki Natsume, Mengjiao Li, Rojas-Chaverra N. Marcela, Yutaka Suzuki, Masato T. Kanemaki, Koji Okamoto, Arinobu Tojo, Noriko Gotoh, et al.
    • Journal Title

      Cancer Science

      Volume: 112 Pages: 1209-1224

    • DOI

      10.1111/cas.14776

    • Peer Reviewed / Open Access
  • [Journal Article] Biological significance of KRAS mutant allele expression in ovarian endometriosis2021

    • Author(s)
      Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Ryo Tamura, Tatsuya Ishiguro, Hiroaki Kase, Teiichi Motoyama, Takayuki Enomoto, et al.
    • Journal Title

      Cancer Science

    • DOI

      10.1111/cas.14871

    • Peer Reviewed / Open Access
  • [Journal Article] MeCP2 controls neural stem cell fate specification through miR-199a-mediated inhibition of BMP- Smad signaling2021

    • Author(s)
      Nakashima H., Tsujimura K., Irie K., Imamura T., Trujillo CA., Ishizu M., Uesaka M., Pan M., Noguchi H., Okata K., Aoyagi K., Ando-Noda T., Okano H., Muotri AR., Nakashima K.
    • Journal Title

      Cell Reports

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genomic profiling reveals heterogeneous populations of ductal carcinoma in situ of the breast2021

    • Author(s)
      Satoi Nagasawa, Yuta Kuze, Ichiro Maeda, Yasuyuki Kojima, Ai Motoyoshi, Tatsuya Onishi, Hibiki Seino, Ayako Suzuki, Masahide Seki, Eisuke Inoue, Koichiro Tsugawa, Tomohiko Ohta, Yutaka Suzuki, et al.
    • Journal Title

      Communications Biology

      Volume: 4

    • DOI

      10.1038/s42003-021-01959-9

    • Peer Reviewed / Open Access
  • [Journal Article] A corset function of exoskeletal ECM promotes body elongation in Drosophila2021

    • Author(s)
      Reiko Tajiri, Haruhiko Fujiwara, Tetsuya Kojima
    • Journal Title

      Communications Biology

      Volume: 4 Pages: 88

    • DOI

      10.1038/s42003-020-01630-9

    • Peer Reviewed / Open Access
  • [Journal Article] De novo genome assembly of two tomato ancestors, Solanum pimpinellifolium and Solanum lycopersicum var. cerasiforme, by long-read sequencing2021

    • Author(s)
      Hitomi Takei, Kenta Shirasawa, Kosuke Kuwabara, Atsushi Toyoda, Yuma Matsuzawa, Shinji Iioka, Tohru Ariizumi
    • Journal Title

      DNA Research

      Volume: 28

    • DOI

      10.1093/dnares/dsaa029

    • Peer Reviewed / Open Access
  • [Journal Article] Ezh1 regulates expression of Cpg15/Neuritin in mouse cortical neurons2021

    • Author(s)
      Shun Utsunomiya, Yusuke Kishi, Masafumi Tsuboi, Daichi Kawaguchi, Yukiko Gotoh, Manabu Abe, Kenji Sakimura, Kazuma Maeda, Hiroshi Takemoto
    • Journal Title

      Drug Discoveries & Therapeutics

    • DOI

      10.5582/ddt.2021.01017

    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of histone H3 lysine 4 and 36 tri-methylation in Brassica rapa L.2021

    • Author(s)
      Mehraj H, Takahashi S, Miyaji N, Akter A, Suzuki Y, Seki M, Dennis ES, Fujimoto R
    • Journal Title

      Front Plant Sci

    • DOI

      10.3389/fpls.2021.659634

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Institutional and Social Issues Surrounding Genetic Counselors in Japan : Current Challenges and Implications for the Global Community2021

    • Author(s)
      Yayoi Aizawa, Atsushi Watanabe, Kazuto Kato
    • Journal Title

      Frontiers in Genetics

      Volume: 12

    • DOI

      10.3389/fgene.2021.646177

    • Peer Reviewed / Open Access
  • [Journal Article] Frequent Tumor Burden Monitoring of Esophageal Squamous Cell Carcinoma With Circulating Tumor DNA Using Individually Designed Digital Polymerase Chain Reaction2021

    • Author(s)
      Takeshi Iwaya, Fumitaka Endo, Fumiaki Takahashi, Takashi Tokino, Yasushi Sasaki, Satoshi S. Nishizuka
    • Journal Title

      Gastroenterology

      Volume: 160 Pages: 463-465.e4

    • DOI

      10.1053/j.gastro.2020.09.035

    • Peer Reviewed
  • [Journal Article] Effects of mitoTALENs-Directed Double-Strand Breaks on Plant Mitochondrial Genomes2021

    • Author(s)
      Shin-ichi Arimura
    • Journal Title

      Genes

      Volume: 12 Pages: 153

    • DOI

      10.3390/genes12020153

    • Peer Reviewed / Open Access
  • [Journal Article] Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer2021

    • Author(s)
      Miho Oka, Liu Xu, Toshihiro Suzuki, Toshiaki Yoshikawa, Hiromi Sakamoto, Hayato Uemura, Akiyasu C. Yoshizawa, Yutaka Suzuki, Tetsuya Nakatsura, Yasushi Ishihama, Ayako Suzuki, Masahide Seki
    • Journal Title

      Genome Biology

      Volume: 22

    • DOI

      10.1186/s13059-020-02240-8

    • Peer Reviewed / Open Access
  • [Journal Article] Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells2021

    • Author(s)
      Satomi Mitsuhashi, So Nakagawa, Mitsuru Sasaki-Honda, Hidetoshi Sakurai, Martin C Frith, Hiroaki Mitsuhashi
    • Journal Title

      Human Molecular Genetics

    • DOI

      10.1093/hmg/ddab063

    • Peer Reviewed / Open Access
  • [Journal Article] Genetic analyses of a secondary poroma and trichoblastoma in a HRAS-mutated sebaceous nevus2021

    • Author(s)
      Minowa, Tomoyuki ; Kamiya, Takafumi ; Hida, Tokimasa ; Okura, Masae ; Kato, Junji ; Idogawa, Masashi ; Tange, Shoichiro ; Hirano, Tomomi ; Tokino, Takashi ; Uhara, Hisashi,
    • Journal Title

      J Dermatol

    • DOI

      10.1111/1346-8138.15919

    • Peer Reviewed / Open Access
  • [Journal Article] KDM2B is involved in the epigenetic regulation of TGF-β-induced epithelial-mesenchymal transition in lung and pancreatic cancer cell lines2021

    • Author(s)
      Sasithorn Wanna-Udom, Minoru Terashima, Kusuma Suphakhong, Akihiko Ishimura, Takahisa Takino, Takeshi Suzuki
    • Journal Title

      Journal of Biological Chemistry

      Volume: 296 Pages: 100213

    • DOI

      10.1074/jbc.ra120.015502

    • Peer Reviewed / Open Access
  • [Journal Article] Centriole and PCM cooperatively recruit CEP192 to spindle poles to promote bipolar spindle assembly2021

    • Author(s)
      Takumi Chinen, Kaho Yamazaki, Kaho Hashimoto, Ken Fujii, Koki Watanabe, Yutaka Takeda, Shohei Yamamoto, Yuka Nozaki, Yuki Tsuchiya, Daisuke Takao, Daiju Kitagawa
    • Journal Title

      Journal of Cell Biology

      Volume: 220

    • DOI

      10.1083/jcb.202006085

    • Peer Reviewed / Open Access
  • [Journal Article] Serum Helicobacter pylori antibody reactivity in seven Asian countries using an automated latex aggregation turbidity assay2021

    • Author(s)
      Junko Akada, Evariste Tshibangu-Kabamba, Vo Phuoc Tuan, Shusaku Kurogi, Yuichi Matsuo, Shamshul Ansari, Dalla Doohan, Bui Hoang Phuc, Phawinee Subsomwong, Yoshio Yamaoka, et al.
    • Journal Title

      Journal of Gastroenterology and Hepatology

    • DOI

      10.1111/jgh.15467

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A global phylogenetic analysis of Japanese tonsil-derived Epstein-Barr virus strains by using viral whole-genome cloning and long-read sequencing2021

    • Author(s)
      Misako Yajima, Risako Kakuta, Yutaro Saito, Shiori Kitaya, Atsushi Toyoda, Kazufumi Ikuta, Jun Yasuda, Nobuo Ohta, and Teru Kanda
    • Journal Title

      Journal of General Virology

      Volume: 102

    • DOI

      10.1099/jgv.0.001549

    • Peer Reviewed
  • [Journal Article] オオカミやヤマイヌと呼ばれたシーボルトが残したニホンオオカミ標本の謎2021

    • Author(s)
      石黒直隆、松村秀一、寺井洋平、本郷一美
    • Journal Title

      Journal of the Japan Veterinary Medical Association

    • Peer Reviewed
  • [Journal Article] Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency2021

    • Author(s)
      Yukako Katsura, Toshimichi Ikemura, Rei Kajitani, Atsushi Toyoda, Takehiko Itoh, Mitsuaki Ogata, Ikuo Miura, Kennosuke Wada, Yoshiko Wada, Yoko Satta
    • Journal Title

      Life Science Alliance

      Volume: 4 Pages: e202000905

    • DOI

      10.26508/lsa.202000905

    • Peer Reviewed / Open Access
  • [Journal Article] Z-ring-associated proteins regulate clustering of the replication terminus-binding protein ZapT in Caulobacter Crescentus.2021

    • Author(s)
      Ozaki Shogo, Wakasugi Yasutaka, Tsutomu Katayama
    • Journal Title

      mBio

    • DOI

      10.1128/mBio.02196-20

    • Peer Reviewed / Open Access
  • [Journal Article] Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan2021

    • Author(s)
      Koki Yoshida, Ruixuan Zhang, Kimberly G. Garcia, Hisashi Endo, Yasuhiro Gotoh, Tetsuya Hayashi, Masaharu Takemura, Hiroyuki Ogata
    • Journal Title

      Microbiology Resource Announcements

      Volume: 10

    • DOI

      10.1128/mra.01323-20

    • Peer Reviewed / Open Access
  • [Journal Article] Association analysis of repetitive elements and R-loop formation across species2021

    • Author(s)
      Chao Zeng, Masahiro Onoguchi, Michiaki Hamada
    • Journal Title

      Mobile DNA

      Volume: 12

    • DOI

      10.1186/s13100-021-00231-5

    • Peer Reviewed / Open Access
  • [Journal Article] Genomic Signatures for Species-Specific Adaptation in Lake Victoria Cichlids Derived from Large-Scale Standing Genetic Variation2021

    • Author(s)
      Haruna Nakamura, Mitsuto Aibara, Rei Kajitani, Hillary D J Mrosso, Semvua I Mzighani, Atsushi Toyoda, Takehiko Itoh, Norihiro Okada, Masato Nikaido
    • Journal Title

      Molecular Biology and Evolution

    • DOI

      10.1093/molbev/msab084

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] A single m6A modification in U6 snRNA diversifies exon sequence at the 5' splice site2021

    • Author(s)
      Yuma Ishigami, Takayuki Ohira, Yui Isokawa, Yutaka Suzuki and Tsutomu Suzuki
    • Journal Title

      Nature Communications

    • Peer Reviewed / Open Access
  • [Journal Article] Selectivity of mRNA degradation by autophagy in yeast2021

    • Author(s)
      Shiho Makino, Tomoko Kawamata, Shintaro Iwasaki, Yoshinori Ohsumi
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-021-22574-6

    • Peer Reviewed / Open Access
  • [Journal Article] Genome editing reveals fitness effects of a gene for sexual dichromatism in Sulawesian fishes2021

    • Author(s)
      Satoshi Ansai, Koji Mochida, Shingo Fujimoto, Daniel F. Mokodongan, Bayu Kreshna Adhitya Sumarto, Kawilarang W. A. Masengi, Atsushi Toyoda, Kiyoshi Naruse, Kazunori Yamahira, Jun Kitano, et al.
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-021-21697-0

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Rpd3/CoRest-mediated activity-dependent transcription regulates the flexibility in memory updating in Drosophila2021

    • Author(s)
      Mai Takakura, Reiko Nakagawa, Takeshi Ota, Yoko Kimura, Man Yung NG, Abdalla G. Alia, Hiroyuki Okuno, Yukinori Hirano
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-021-20898-x

    • Peer Reviewed / Open Access
  • [Journal Article] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis2021

    • Author(s)
      Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa, Taiki Nakaya, Atsushi Toyoda, Shoko Hikosaka, Eiji Goto, Kazuki Saito, Mami Yamazaki, et al.
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-020-20508-2

    • Peer Reviewed / Open Access
  • [Journal Article] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria2021

    • Author(s)
      Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
    • Journal Title

      Nature Communications

      Volume: 12

    • DOI

      10.1038/s41467-020-20199-9

    • Peer Reviewed / Open Access
  • [Journal Article] A RUNX-CBF β-driven enhancer directs the Irf8 dose-dependent lineage choice between DCs and monocytes2021

    • Author(s)
      Koichi Murakami, Haruka Sasaki, Akira Nishiyama, Daisuke Kurotaki, Wataru Kawase, Tatsuma Ban, Jun Nakabayashi, Satoko Kanzaki, Yoichi Sekita, Hideaki Nakajima, Keiko Ozato, Tohru Kimura, Tomohiko Tamura
    • Journal Title

      Nature Immunology

      Volume: 22 Pages: 301-311

    • DOI

      10.1038/s41590-021-00871-y

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Hamster PIWI proteins bind to piRNAs with stage-specific size variations during oocyte maturation2021

    • Author(s)
      Kyoko Ishino, Hidetoshi Hasuwa, Jun Yoshimura, Yuka W Iwasaki, Hidenori Nishihara, Naomi M Seki, Yasubumi Sakakibara, Atsushi Toyoda, Takehiko Itoh, Mikiko C Siomi, Shinichi Morishita, Haruhiko Siomi, et al.
    • Journal Title

      Nucleic Acids Research

      Volume: 49 Pages: 2700-2720

    • DOI

      10.1093/nar/gkab059

    • Peer Reviewed / Open Access
  • [Journal Article] How plants grow under gravity conditions besides 1 g : perspectives from hypergravity and space experiments that employ bryophytes as a model organism2021

    • Author(s)
      Atsushi Kume, Hiroyuki Kamachi, Yusuke Onoda, Yuko T. Hanba, Yuji Hiwatashi, Ichirou Karahara, Tomomichi Fujita
    • Journal Title

      Plant Molecular Biology

    • DOI

      10.1007/s11103-021-01146-8

    • Peer Reviewed
  • [Journal Article] Molecular dissection of haustorium development in Orobanchaceae parasitic plants2021

    • Author(s)
      Kaori Miyashima Furuta, Lei Xiang, Songkui Cui, Satoko Yoshida
    • Journal Title

      Plant Physiology

    • DOI

      10.1093/plphys/kiab153

    • Peer Reviewed / Open Access
  • [Journal Article] Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing2021

    • Author(s)
      Bansho Masutani, Shin-ichi Arimura, Shinichi Morishita
    • Journal Title

      PLOS Computational Biology

      Volume: 17 Pages: e1008597

    • DOI

      10.1371/journal.pcbi.1008597

    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide analysis of long noncoding RNAs, 24-nt siRNAs, DNA methylation and H3K27me3 marks in Brassica rapa2021

    • Author(s)
      Hasan Mehraj, Daniel J. Shea, Satoshi Takahashi, Naomi Miyaji, Ayasha Akter, Motoaki Seki, Elizabeth S. Dennis, Ryo Fujimoto, Kenji Osabe
    • Journal Title

      PLOS ONE

      Volume: 16 Pages: e0242530

    • DOI

      10.1371/journal.pone.0242530

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Substantial anti-gout effect conferred by common and rare dysfunctional variants of URAT1/SLC22A122021

    • Author(s)
      Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Tappei Takada, Hirotaka Matsuo, et al.
    • Journal Title

      Rheumatology

    • DOI

      10.1093/rheumatology/keab327

    • Peer Reviewed / Open Access
  • [Journal Article] Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq2021

    • Author(s)
      Kotaro Chihara, Lars Barquist, Kenichi Takasugi, Naohiro Noda, Satoshi Tsuneda
    • Journal Title

      RNA Biology

    • DOI

      10.1080/15476286.2021.1917184

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Vasculature-driven stem cell population coordinates tissue scaling in dynamic organs2021

    • Author(s)
      R. Ichijo, M. Kabata, H. Kidoya, F. Muramatsu, R. Ishibashi, K. Abe, K. Tsutsui, H. Kubo, Y. Iizuka, S. Kitano, H. Miyachi, Y. Kubota, H. Fujiwara, A. Sada, T. Yamamoto, F. Toyoshima
    • Journal Title

      Science Advances

      Volume: 7 Pages: eabd2575

    • DOI

      10.1126/sciadv.abd2575

    • Peer Reviewed / Open Access
  • [Journal Article] Genetic switch in UV response of mimicry-related pale-yellow colors in Batesian mimic butterfly, Papilio polytes2021

    • Author(s)
      Shinichi Yoda, Kousuke Sakakura, Tasuku Kitamura, Yûsuke KonDo, Kazuki Sato, Ryosuke Ohnuki, Itsuki Someya, Shinya Komata, Tetsuya Kojima, Shinya Yoshioka, Haruhiko Fujiwara
    • Journal Title

      Science Advances

      Volume: 7 Pages: eabd6475

    • DOI

      10.1126/sciadv.abd6475

    • Peer Reviewed / Open Access
  • [Journal Article] Sparsely methylated mitochondrial cell free DNA released from cardiomyocytes contributes to systemic inflammatory response accompanied by atrial fibrillation2021

    • Author(s)
      Masahiro Yamazoe, Tetsuo Sansano, Kensuke Ihara, Kentaro Takahashi, Wakana Nakamura, Naomi Takahashi, Hiroaki Komuro, Satomi Hamada, Tetsushi Furukawa
    • Journal Title

      Scientific Reports

      Volume: 11

    • DOI

      10.1038/s41598-021-85204-7

    • Peer Reviewed / Open Access
  • [Journal Article] Genomics and transcriptomics of the green mussel explain the durability of its byssus2021

    • Author(s)
      Koji Inoue, Yuki Yoshioka, Hiroyuki Tanaka, Azusa Kinjo, Mieko Sassa, Ikuo Ueda, Chuya Shinzato, Atsushi Toyoda, Takehiko Itoh
    • Journal Title

      Scientific Reports

      Volume: 11

    • DOI

      10.1038/s41598-021-84948-6

    • Peer Reviewed / Open Access
  • [Journal Article] Helicobacter pylori type 4 secretion systems as gastroduodenal disease markers2021

    • Author(s)
      Bui Hoang Phuc, Vo Phuoc Tuan, Ho Dang Quy Dung, Tran Thanh Binh, Pham Huu Tung, Tran Dinh Tri, Ngo Phuong Minh Thuan, Vu Van Khien, Takeshi Matsumoto, Yoshio Yamaoka, et al.
    • Journal Title

      Scientific Reports

      Volume: 11

    • DOI

      10.1038/s41598-021-83862-1

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] BMP signaling suppresses Gemcl expression and ependymal differentiation of mouse telencephalic progenitors2021

    • Author(s)
      Hanae Omiya, Shima Yamaguchi, Tomoyuki Watanabe, Takaaki Kuniya, Yujin Harada, Daichi Kawaguchi, Yukiko Gotoh
    • Journal Title

      Scientific Reports

      Volume: 11 Pages: 613

    • DOI

      10.1038/s41598-020-79610-6

    • Peer Reviewed / Open Access
  • [Journal Article] Comparative Analysis of Patient-Matched PDOs Revealed a Reduction in OLFM4-Associated Clusters in Metastatic Lesions in Colorectal Cancer2021

    • Author(s)
      Takuya Okamoto, David duVerle, Katsuyuki Yaginuma, Yasuko Natsume, Hitomi Yamanaka, Daisuke Kusama, Mayuko Fukuda, Mayuko Yamamoto, Yutaka Suzuki, Satoshi Nagayama, Ryoji Yao, et al.
    • Journal Title

      Stem Cell Reports

    • DOI

      10.1016/j.stemcr.2021.02.012

    • Peer Reviewed / Open Access
  • [Journal Article] Ligand-receptor interactions in plant hormone signaling2021

    • Author(s)
      Jun Takeuchi, Kosuke Fukui, Yoshiya Seto, Yousuke Takaoka, Masanori Okamoto
    • Journal Title

      The Plant Journal

      Volume: 105 Pages: 290-306

    • DOI

      10.1111/tpj.15115

    • Peer Reviewed / Open Access
  • [Journal Article] Transcript Identification Through Long-Read Sequencing2021

    • Author(s)
      Masahide Seki, Miho Oka, Liu Xu, Ayako Suzuki, Yutaka Suzuki
    • Journal Title

      Methods in Molecular Biology

      Volume: 2284 Pages: 531-541

    • DOI

      10.1007/978-1-0716-1307-8_29

  • [Journal Article] The validation of the Helicobacter pylori CagA typing by immunohistochemidstry : nationwide application in Indonesia2020

    • Author(s)
      Muhammad Miftahussurur, Dalla Doohan, Ari Fahrial Syam, Iswan Abbas Nusi, Langgeng Agung Waskito, Kartika Afrida Fauzia, Yudith Annisa Ayu Rezkitha, Tomohisa Uchida, Yoshio Yamaoka, et al.
    • Journal Title

      Acta Histochemica

      Volume: 122 Pages: 151594

    • DOI

      10.1016/j.acthis.2020.151594

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Gastric mucosal microbiota in a Mongolian population with gastric cancer and precursor conditions2020

    • Author(s)
      Boldbaatar Gantuya, Hashem B. E1 Serag, Takashi Matsumoto, Nadim J. Ajami, Tomohisa Uchida, Khasag Oyuntsetseg, Dashdorj Bolor, Yoshio Yamaoka
    • Journal Title

      Alimentary Pharmacology & Therapeutics

      Volume: 51 Pages: 770-780

    • DOI

      10.1111/apt.15675

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A GWAS approach to find SNPs associated with salt removal in rice leaf sheath2020

    • Author(s)
      Sarin Neang, Marjorie de Ocampo, James A Egdane, John Damien Platten, Abdelbagi M Ismail, Masahide Seki, Yutaka Suzuki, Nicola Stephanie Skoulding, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
    • Journal Title

      Annals of Botany

      Volume: 126 Pages: 1193-1202

    • DOI

      10.1093/aob/mcaa139

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Finding the direct optimal RNA barrier energy and improving pathways with an arbitrary energy model2020

    • Author(s)
      Hiroki Takizawa, Junichi Iwakiri, Goro Terai, Kiyoshi Asai
    • Journal Title

      Bioinformatics

      Volume: 36 Pages: i227-i235

    • DOI

      10.1093/bioinformatics/btaa469

    • Peer Reviewed / Open Access
  • [Journal Article] HiC-Hiker : a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C2020

    • Author(s)
      Ryo Nakabayashi, Shinichi Morishita
    • Journal Title

      Bioinformatics

      Volume: 36 Pages: 3966-3974

    • DOI

      10.1093/bioinformatics/btaa288

    • Peer Reviewed / Open Access
  • [Journal Article] Finding long tandem repeats in long noisy reads2020

    • Author(s)
      Shinichi Morishita, Kazuki Ichikawa, Eugene W Myers
    • Journal Title

      Bioinformatics

    • DOI

      10.1093/bioinformatics/btaa865

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] PBSIM2 : a simulator for long-read sequencers with a novel generative model of quality scores2020

    • Author(s)
      Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
    • Journal Title

      Bioinformatics

    • DOI

      10.1093/bioinformatics/btaa835

    • Peer Reviewed / Open Access
  • [Journal Article] A Four-Dimensional Organoid System to Visualize Cancer Cell Vascular Invasion2020

    • Author(s)
      Kiminori Yanagisawa, Masamitsu Konno, Hao Liu, Shinji Irie, Tsunekazu Mizushima, Masaki Mori, Yuichiro Doki, Hidetoshi Eguchi, Michiya Matsusaki, Hideshi Ishii
    • Journal Title

      Biology

      Volume: 9 Pages: 361

    • DOI

      10.3390/biology9110361

    • Peer Reviewed / Open Access
  • [Journal Article] Heterogeneous fluid-like movements of chromatin and their implications to transcription.2020

    • Author(s)
      Ashwin SS, Maeshima K, Sasai M.
    • Journal Title

      Biophys Rev.

      Volume: 12 Issue: 2 Pages: 461-468

    • DOI

      10.1007/s12551-020-00675-8

    • Peer Reviewed / Open Access
  • [Journal Article] RintC : fast and accuracy-aware decomposition of distributions of RNA secondary structures with extended logsumexp2020

    • Author(s)
      Hiroki Takizawa, Junichi Iwakiri, Kiyoshi Asai
    • Journal Title

      BMC Bioinformatics

      Volume: 21

    • DOI

      10.1186/s12859-020-3535-5

    • Peer Reviewed / Open Access
  • [Journal Article] MoAIMS : efficient software for detection of enriched regions of MeRIP-Seq2020

    • Author(s)
      Yiqian Zhang, Michiaki Hamada
    • Journal Title

      BMC Bioinformatics

      Volume: 21 Pages: 103

    • DOI

      10.1186/s12859-020-3430-0

    • Peer Reviewed / Open Access
  • [Journal Article] Multiple waves of freshwater colonization of the three-spined stickleback in the Japanese Archipelago2020

    • Author(s)
      Ryo Kakioka, Seiichi Mori, Tomoyuki Kokita, Takuya K. Hosoki, Atsushi J. Nagano, Asano Ishikawa, Manabu Kume, Atsushi Toyoda, Jun Kitano
    • Journal Title

      BMC Evolutionary Biology

      Volume: 20

    • DOI

      10.1186/s12862-020-01713-5

    • Peer Reviewed / Open Access
  • [Journal Article] An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data2020

    • Author(s)
      Vasanthan Jayakumar, Hiromi Ishii, Misato Seki, Wakako Kumita, Takashi Inoue, Sumitaka Hase, Kengo Sato, Hideyuki Okano, Erika Sasaki, Yasubumi Sakakibara
    • Journal Title

      BMC Genomics

      Volume: 21 Pages: 243

    • DOI

      10.1186/s12864-020-6657-2

    • Peer Reviewed / Open Access
  • [Journal Article] Tissue-specific expression analysis of Na+ and C1- transporter genes associated with salt removal ability in rice leaf sheath2020

    • Author(s)
      Sarin Neang, Itsuki Goto, Nicola Stephanie Skoulding, Joyce A. Cartagena, Mana Kano-Nakata, Akira Yamauchi, Shiro Mitsuya
    • Journal Title

      BMC Plant Biology

      Volume: 20

    • DOI

      10.1186/s12870-020-02718-4

    • Peer Reviewed / Open Access
  • [Journal Article] One-carbon metabolism for cancer diagnostic and therapeutic approaches2020

    • Author(s)
      Ayumu Asai, Masamitsu Konno, Jun Koseki, Masateru Taniguchi, Andrea Vecchione, Hideshi Ishii
    • Journal Title

      Cancer Letters

      Volume: 470 Pages: 141-148

    • DOI

      10.1016/j.canlet.2019.11.023

    • Peer Reviewed / Open Access
  • [Journal Article] Clonal lineage from normal endometrium to ovarian clear cell carcinoma through ovarian endometriosis2020

    • Author(s)
      Kazuaki Suda, Luis Antonio Cruz Diaz, Kosuke Yoshihara, Hirofumi Nakaoka, Nozomi Yachida, Teiichi Motoyama, Ituro Inoue, Takayuki Enomoto
    • Journal Title

      Cancer Science

      Volume: 111 Pages: 3000-3009

    • DOI

      10.1111/cas.14507

    • Peer Reviewed / Open Access
  • [Journal Article] Combination of KRAS and SMAD4 mutations in formalin-fixed paraffin-embedded tissues as a biomarker for pancreatic cancer2020

    • Author(s)
      Takahiro Yokose, Minoru Kitago, Sachiko Matsuda, Yasushi Sasaki, Yohei Masugi, Yuki Nakamura, Masahiro Shinoda, Hiroshi Yagi, Takashi Tokino, Yuko Kitagawa, et al.
    • Journal Title

      Cancer Science

      Volume: 111 Pages: 2174-2182

    • DOI

      10.1111/cas.14425

    • Peer Reviewed / Open Access
  • [Journal Article] Pathogenesis of multiple pancreatic cancers involves multicentric carcinogenesis and intrapancreatic metastasis2020

    • Author(s)
      Yusuke Fujita, Sachiko Matsuda, Yasushi Sasaki, Yohei Masugi, Minoru Kitago, Hiroshi Yagi, Yuta Abe, Masahiro Shinoda, Takashi Tokino, Michiie Sakamoto, Yuko Kitagawa
    • Journal Title

      Cancer Science

      Volume: 111 Pages: 739-748

    • DOI

      10.1111/cas.14268

    • Peer Reviewed / Open Access
  • [Journal Article] Essentiality of CENP-A Depends on Its Binding Mode to HJURP2020

    • Author(s)
      Tetsuya Hori, JingHui Cao, Kohei Nishimura, Mariko Ariyoshi, Yasuhiro Arimura, Hitoshi Kurumizaka, Tatsuo Fukagawa
    • Journal Title

      Cell Reports

      Volume: 33 Pages: 108388

    • DOI

      10.1016/j.celrep.2020.108388

    • Peer Reviewed / Open Access
  • [Journal Article] Setdla Insufficiency in Mice Attenuates Excitatory Synaptic Function and Recapitulates Schizophrenia-Related Behavioral Abnormalities2020

    • Author(s)
      Kenichiro Nagahama, Kazuto Sakoori, Takaki Watanabe, Yusuke Kishi, Keita Kawaji, Michinori Koebis, Kazuki Nakao, Yukiko Gotoh, Atsu Aiba, Naofumi Uesaka, Masanobu Kano
    • Journal Title

      Cell Reports

      Volume: 32 Pages: 108126

    • DOI

      10.1016/j.celrep.2020.108126

    • Peer Reviewed / Open Access
  • [Journal Article] Multiomics Investigation Revealing the Characteristics of HIV-1-Infected Cells In Vivo2020

    • Author(s)
      Hirofumi Aso, Shumpei Nagaoka, Eiryo Kawakami, Jumpei Ito, Saiful Islam, Benjy Jek Yang Tan, Shinji Nakaoka, Koichi Ashizaki, Katsuyuki Shiroguchi, Yutaka Suzuki, Yorifumi Satou, Yoshio Koyanagi, Kei Sato
    • Journal Title

      Cell Reports

      Volume: 32 Pages: 107887

    • DOI

      10.1016/j.celrep.2020.107887

    • Peer Reviewed / Open Access
  • [Journal Article] Systematic Analysis of Targets of Pumilio-mediated mRNA Decay Reveals that PUM1 Repression by DNA Damage Activates Translesion Synthesis2020

    • Author(s)
      Yamada T., Imamachi N., Imamura K., Taniue K., Kawamura T., Suzuki Y., Nagahama M., Akimitsu N.
    • Journal Title

      Cell Reports

      Volume: 31 Pages: 107542

    • DOI

      10.1016/j.celrep.2020.107542

    • Peer Reviewed / Open Access
  • [Journal Article] RNA Recognition and Immunity-Innate Immune Sensing and Its Posttranscriptional Regulation Mechanisms2020

    • Author(s)
      Takuya Uehata, Osamu Takeuchi
    • Journal Title

      Cells

      Volume: 9 Pages: 1701

    • DOI

      10.3390/cells9071701

    • Peer Reviewed / Open Access
  • [Journal Article] Immuno-Surgical Management of Pancreatic Cancer with Analysis of Cancer Exosomes2020

    • Author(s)
      Yu Takeda, Shogo Kobayashi, Masatoshi Kitakaze, Daisaku Yamada, Hirofumi Akita, Ayumu Asai, Masamitsu Konno, Takahiro Arai, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii, et al.
    • Journal Title

      Cells

      Volume: 9 Pages: 1645

    • DOI

      10.3390/cells9071645

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The effects of codon bias and optimality on mRNA and protein regulation2020

    • Author(s)
      Fabian Hia, Osamu Takeuchi
    • Journal Title

      Cellular and Molecular Life Sciences

      Volume: 78 Pages: 1909-1928

    • DOI

      10.1007/s00018-020-03685-7

    • Peer Reviewed
  • [Journal Article] Functional Role of the L396R Mutation of Tks5 Identified by an Exome-Wide Association Study in Atrial Fibrillation2020

    • Author(s)
      Xiaoxi Yang, Tetsuo Sasano, Yusuke Ebana, Jun K. Takeuchi, Kensuke Ihara, Masahiro Yamazoe, Tetsushi Furukawa
    • Journal Title

      Circulation Journal

      Volume: 84 Pages: 2148-2157

    • DOI

      10.1253/circj.cj-20-0101

    • Peer Reviewed
  • [Journal Article] Granulocyte-colony stimulating factor-producing uterine cervical cancer treated with chemoradiotherapy : A case report with mutation analysis and literature review2020

    • Author(s)
      Shintaro Shiba, Takahiro Oike, Ken Ando, Yuya Yoshimoto, Yoshiyasu Takayama, Tatsuya Ohno
    • Journal Title

      Clinical Case Reports

      Volume: 9 Pages: 185-192

    • DOI

      10.1002/ccr3.3495

    • Peer Reviewed / Open Access
  • [Journal Article] Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations2020

    • Author(s)
      Takashi Gakuhari, Shigeki Nakagome, Simon Rasmussen, Morten E. Allentoft, Takehiro Sato, Thorfinn Korneliussen, Atsushi Toyoda, Tsunehiko Hanihara, Eske Willerslev, Martin Sikora, Hiroki Oota, et al.
    • Journal Title

      Communications Biology

      Volume: 3

    • DOI

      10.1038/s42003-020-01162-2

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] The Genetic Basis of Morphological Diversity in Domesticated Goldfish2020

    • Author(s)
      Tetsuo Kon, Yoshihiro Omori, Kentaro Fukuta, Hironori Wada, Masakatsu Watanabe, Zelin Chen, Miki Iwasaki, Atsushi Toyoda, Shawn M. Burgess, Hideki Noguchi, Takahisa Furukawa, et al.
    • Journal Title

      Current Biology

      Volume: 30 Pages: 2260-2274.e6

    • DOI

      10.1016/j.cub.2020.04.034

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Genetic and structural analysis of the in vivo functional redundancy between murine NANOS2 and NANOS32020

    • Author(s)
      Danelle Wright, Makoto Kiso, Yumiko Saga
    • Journal Title

      Development

      Volume: 148 Pages: dev191916

    • DOI

      10.1242/dev.191916

    • Peer Reviewed / Open Access
  • [Journal Article] An auxin transport network underlies xylem bridge formation between the hemi-parasitic plant Phtheirospermum japonicum and host Arabidopsis2020

    • Author(s)
      Takanori Wakatake, Satoshi Ogawa, Satoko Yoshida, Ken Shirasu
    • Journal Title

      Development

      Volume: 147 Pages: dev187781

    • DOI

      10.1242/dev.187781

    • Peer Reviewed / Open Access
  • [Journal Article] A genome database for a Japanese population of the larvacean Oikopleura dioica2020

    • Author(s)
      Kai Wang, Ryo Tomura, Wei Chen, Miho Kiyooka, Hinako Ishizaki, Tomoyuki Aizu, Yohei Minakuchi, Masahide Seki, Yutaka Suzuki, Takehiko Itoh, Atsushi Toyoda, Hiroki Nishida, Takeshi A. Onuma, et al.
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62 Pages: 450-461

    • DOI

      10.1111/dgd.12689

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Notch signaling2020

    • Author(s)
      Kenji Matsuno
    • Journal Title

      Development, Growth & Differentiation

      Volume: 62

    • DOI

      10.1111/dgd.12642

    • Peer Reviewed / Open Access
  • [Journal Article] State-of-the-Art Technology of Model Organisms for Current Human Medicine2020

    • Author(s)
      Masamitsu Konno, Ayumu Asai, Toru Kitagawa, Masami Yabumoto, Ken Ofusa, Takahiro Arai, Takaaki Hirotsu, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
    • Journal Title

      Diagnostics

      Volume: 10 Pages: 392

    • DOI

      10.3390/diagnostics10060392

    • Peer Reviewed / Open Access
  • [Journal Article] The physiological potential of anammox bacteria as revealed by their core genome structure2020

    • Author(s)
      Takashi Okubo, Atsushi Toyoda, Kohei Fukuhara, Ikuo Uchiyama, Yuhki Harigaya, Megumi Kuroiwa, Takuma Suzuki, Yuka Murakami, Yuichi Suwa, Hideto Takami
    • Journal Title

      DNA Research

      Volume: 28

    • DOI

      10.1093/dnares/dsaa028

    • Peer Reviewed / Open Access
  • [Journal Article] Comparative genomic analyses illuminate the distinct evolution of megabats within Chiroptera2020

    • Author(s)
      Masato Nikaido, Shinji Kondo, Zicong, Zhang, Jiaqi Wu, Hidenori Nishihara, Yoshihito Niimura, Yutaka Suzuki, Atsushi Toyoda, Asao Fujiyama, Sumio Sugano, Misako Yoneda, Chieko Kai, et al.
    • Journal Title

      DNA Research

      Volume: 27

    • DOI

      10.1093/dnares/dsaa021

    • Peer Reviewed / Open Access
  • [Journal Article] Profibrotic function of pulmonary group 2 innate lymphoid cells is controlled by Regnase-12020

    • Author(s)
      Yoshinari Nakatsuka, Ai Yaku, Tomohiro Handa, Alexis Vandenbon, Yuki Hikichi, Yasutaka Motomura, Yutaka Suzuki, Takuya Uehata, Takashi Mino, Tohru Tsujimura, Kazuyo Moro, Osamu Takeuchi, et al.
    • Journal Title

      European Respiratory Journal

      Volume: 57 Pages: 2000018

    • DOI

      10.1183/13993003.00018-2020

    • Peer Reviewed
  • [Journal Article] Integrative genomic phylogeography reveals signs of mitonuclear incompatibility in a natural hybrid goby population2020

    • Author(s)
      Shotaro Hirase, Ayumi Tezuka, Atsushi J. Nagano, Mana Sato, Sho Hosoya, Kiyoshi Kikuchi, Wataru Iwasaki
    • Journal Title

      Evolution

      Volume: 75 Pages: 176-194

    • DOI

      10.1111/evo.14120

    • Peer Reviewed / Open Access
  • [Journal Article] Single-cell sequencing techniques from individual to multiomics analyses2020

    • Author(s)
      Yukie Kashima, Yoshitaka Sakamoto, Keiya Kaneko, Masahide Seki, Yutaka Suzuki, Ayako Suzuki
    • Journal Title

      Experimental & Molecular Medicine

      Volume: 52 Pages: 1419-1427

    • DOI

      10.1038/s12276-020-00499-2

    • Peer Reviewed / Open Access
  • [Journal Article] Ten Years of Provenance Trials and Application of Multivariate Random Forests Predicted the Most Preferable Seed Source for Silviculture of Abies sachalinensis in Hokkaido, Japan2020

    • Author(s)
      Ikutaro Tsuyama, Wataru Ishizuka, Keiko Kitamura, Haruhiko Taneda, Susumu Goto
    • Journal Title

      Forests

      Volume: 11 Pages: 1058

    • DOI

      10.3390/f11101058

    • Peer Reviewed / Open Access
  • [Journal Article] Role of BgaA as a Pneumococcal Virulence Factor Elucidated by Molecular Evolutionary Analysis2020

    • Author(s)
      Masaya Yamaguchi, Moe Takemura, Kotaro Higashi, Kana Goto, Yujiro Hirose, Tomoko Sumitomo, Masanobu Nakata, Narikazu Uzawa, Shigetada Kawabata
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.582437

    • Peer Reviewed / Open Access
  • [Journal Article] Corrigendum : Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori2020

    • Author(s)
      Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.596598

    • Peer Reviewed / Open Access
  • [Journal Article] Genomic and Physiological Characteristics of a Novel Nitrite-Oxidizing Nitrospira Strain Isolated From a Drinking Water Treatment Plant2020

    • Author(s)
      Hirotsugu Fujitani, Kengo Momiuchi, Kento Ishii, Manami Nomachi, Shuta Kikuchi, Norisuke Ushiki, Yuji Sekiguchi, Satoshi Tsuneda
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.545190

    • Peer Reviewed / Open Access
  • [Journal Article] Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori2020

    • Author(s)
      Hirokazu Yano, Md. Zobaidul Alam, Emiko Rimbara, Tomoko F. Shibata, Masaki Fukuyo, Yoshikazu Furuta, Atsushi Toyoda, Yutaka Suzuki, Sumio Sugano, Keigo Shibayama, Ichizo Kobayashi, et al.
    • Journal Title

      Frontiers in Microbiology

      Volume: 11

    • DOI

      10.3389/fmicb.2020.01628

    • Peer Reviewed / Open Access
  • [Journal Article] Diploid Male Gametes Circumvent Hybrid Sterility Between Asian and African Rice Species2020

    • Author(s)
      Daichi Kuniyoshi, Itaru Masuda, Yoshitaka Kanaoka, Yuki Shimazaki-Kishi, Yoshihiro Okamoto, Hideshi Yasui, Toshio Yamamoto, Kiyotaka Nagaki, Yoichiro Hoshino, Yohei Koide, Itsuro Takamure, Yuji Kishima
    • Journal Title

      Frontiers in Plant Science

      Volume: 11

    • DOI

      10.3389/fpls.2020.579305

    • Peer Reviewed / Open Access
  • [Journal Article] Fertile Tetraploids : New Resources for Future Rice Breeding?2020

    • Author(s)
      Yohei Koide, Daichi Kuniyoshi, Yuji Kishima
    • Journal Title

      Frontiers in Plant Science

      Volume: 11

    • DOI

      10.3389/fpls.2020.01231

    • Peer Reviewed / Open Access
  • [Journal Article] Parallelized Latent Dirichlet Allocation Provides a Novel Interpretability of Mutation Signatures in Cancer Genomes2020

    • Author(s)
      Taro Matsutani, Michiaki Hamada
    • Journal Title

      Genes

      Volume: 11 Pages: 1127

    • DOI

      10.3390/genes11101127

    • Peer Reviewed / Open Access
  • [Journal Article] RNA-Seq Analysis Reveals Localization-Associated Alternative Splicing across 13 Cell Lines2020

    • Author(s)
      Chao Zeng, Michiaki Hamada
    • Journal Title

      Genes

      Volume: 11 Pages: 820

    • DOI

      10.3390/genes11070820

    • Peer Reviewed / Open Access
  • [Journal Article] m6A demethylase ALKBH5 promotes proliferation of esophageal squamous cell carcinoma associated with poor prognosis2020

    • Author(s)
      Yushi Nagaki, Satoru Motoyama, Tomokazu Yamaguchi, Midori Hoshizaki, Yusuke Sato, Teruki Sato, Yukio Koizumi, Akiyuki Wakita, Yuta Kawakita, Yoshihiro Minamiya, Keiji Kuba, et al.
    • Journal Title

      Genes to Cells

      Volume: 25 Pages: 547-561

    • DOI

      10.1111/gtc.12792

    • Peer Reviewed / Open Access
  • [Journal Article] H3K27me3 demethylase UTX regulates the differentiation of a subset of bipolar cells in the mouse retina.2020

    • Author(s)
      Umutoni, D., Iwagawa, T., Baba, Y., Tsuhako, A., Honda, H., Aihara, M, Watanabe, S.
    • Journal Title

      Genes to Cells

      Volume: 25 Pages: 402-412

    • DOI

      10.1111/gtc.12767

    • Peer Reviewed / Open Access
  • [Journal Article] mRNA Editing, Processing and Quality Control in Caenorhabditis elegans2020

    • Author(s)
      Joshua A. Arribere, Hidehito Kuroyanagi, Heather A. Hundley
    • Journal Title

      Genetics

      Volume: 215 Pages: 531-568

    • DOI

      10.1534/genetics.119.301807

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A pipeline for complete characterization of complex germline rearrangements from long DNA reads2020

    • Author(s)
      Satomi Mitsuhashi, Sachiko Ohori, Kazutaka Katoh, Martin C. Frith, Naomichi Matsumoto
    • Journal Title

      Genome Medicine

      Volume: 12

    • DOI

      10.1186/s13073-020-00762-1

    • Peer Reviewed / Open Access
  • [Journal Article] Long-read sequencing for non-small-cell lung cancer genomes2020

    • Author(s)
      Yoshitaka Sakamoto, Liu Xu, Masahide Seki, Toshiyuki T. Yokoyama, Masahiro Kasahara, Yukie Kashima, Akihiro Ohashi, Yoko Shimada, Takashi Kohno, Yuichi Shiraishi, Ayako Suzuki, Yutaka Suzuki, et al.
    • Journal Title

      Genome Research

      Volume: 30 Pages: 1243-1257

    • DOI

      10.1101/gr.261941.120

    • Peer Reviewed / Open Access
  • [Journal Article] Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates2020

    • Author(s)
      Kentaro Kawata, Hiroyasu Wakida, Toshimichi Yamada, Kenzui Taniue, Han Han, Masahide Seki, Yutaka Suzuki, Nobuyoshi Akimitsu
    • Journal Title

      Genome Research

      Volume: 30 Pages: 1481-1491

    • DOI

      10.1101/gr.264408.120

    • Peer Reviewed / Open Access
  • [Journal Article] Epigenetic regulation for acquiring glial identity by neural stem cells during cortical development2020

    • Author(s)
      Takumi Nakagawa, Yoshikuni Wada, Sayako Katada, Yusuke Kishi
    • Journal Title

      Glia

      Volume: 68 Pages: 1554-1567

    • DOI

      10.1002/glia.23818

    • Peer Reviewed
  • [Journal Article] Mutation profiling of uterine cervical cancer patients treated with definitive radiotherapy2020

    • Author(s)
      Yuya Yoshimoto, Yasushi Sasaki, Kazutoshi Murata, Shin-ei Noda, Yuhei Miyasaka, Junko Hamamoto, Mio Furuya, Junko Hirato, Yoshiyuki Suzuki, Tatsuya Ohno, Takashi Tokino, Takahiro Oike, Takashi Nakano
    • Journal Title

      Gynecologic Oncology

      Volume: 159 Pages: 546-553

    • DOI

      10.1016/j.ygyno.2020.08.020

    • Peer Reviewed / Open Access
  • [Journal Article] Gastric microbiota and Helicobacter pylori in Indonesian population2020

    • Author(s)
      Muhammad Miftahussurur, Langgeng Agung Waskito, Hashem B E1-Serag, Nadim J. Ajami, Iswan Abbas Nusi, Ari Fahrial Syam, Titong Sugihartono, Tomohisa Uchida, Yoshio Yamaoka, et al.
    • Journal Title

      Helicobacter

      Volume: 25 Pages: e12695

    • DOI

      10.1111/hel.12695

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Population-based study of Helicobacter pylori infection and antibiotic resistance in Bhutan2020

    • Author(s)
      Ratha-korn Vilaichone, Natsuda Aumpan, Thawee Ratanachu-ek, Tomohisa Uchida, Lotay Tshering, Varocha Mahachai, Yoshio Yamaoka
    • Journal Title

      International Journal of Infectious Diseases

      Volume: 97 Pages: 102-107

    • DOI

      10.1016/j.ijid.2020.05.077

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Helicobacter pylori Virulence Factor Cytotoxin-Associated Gene A (CagA)-Mediated Gastric Pathogenicity2020

    • Author(s)
      Shamshul Ansari, Yoshio Yamaoka
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 7430

    • DOI

      10.3390/ijms21197430

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Roles of ASYMMETRIC LEAVES2 (AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis2020

    • Author(s)
      Hidekazu Iwakawa, Hiro Takahashi, Yasunori Machida, Chiyoko Machida
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 7314

    • DOI

      10.3390/ijms21197314

    • Peer Reviewed / Open Access
  • [Journal Article] Convolutional Neural Network Can Recognize Drug Resistance of Single Cancer Cells2020

    • Author(s)
      Kiminori Yanagisawa, Masayasu Toratani, Ayumu Asai, Masamitsu Konno, Hirohiko Niioka, Tsunekazu Mizushima, Taroh Satoh, Jun Miyake, Kazuhiko Ogawa, Andrea Vecchione, Yuichiro Doki, Hidetoshi Eguchi, Hideshi Ishii
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 3166

    • DOI

      10.3390/ijms21093166

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] COVID-19 Drug Discovery Using Intensive Approaches2020

    • Author(s)
      Ayumu Asai, Masamitsu Konno, Miyuki Ozaki, Chihiro Otsuka, Andrea Vecchione, Takahiro Arai, Toru Kitagawa, Ken Ofusa, Masami Yabumoto, Takaaki Hirotsu, Masateru Taniguchi, Hidetoshi Eguchi, Yuichiro Doki, Hideshi Ishii
    • Journal Title

      International Journal of Molecular Sciences

      Volume: 21 Pages: 2839

    • DOI

      10.3390/ijms21082839

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Environmental Atlas of Prokaryotes Enables Powerful and Intuitive Habitat-Based Analysis of Community Structures2020

    • Author(s)
      Kazumori Mise, Wataru Iwasaki
    • Journal Title

      iScience

      Volume: 23 Pages: 101624

    • DOI

      10.1016/j.isci.2020.101624

    • Peer Reviewed / Open Access
  • [Journal Article] Notch and Delta Control the Switch and Formation of Camouflage Patterns in Caterpillars2020

    • Author(s)
      Hongyuan Jin, Shinichi Yoda, Liang Liu, Tetsuya Kojima, Haruhiko Fujiwara
    • Journal Title

      iScience

      Volume: 23 Pages: 101315

    • DOI

      10.1016/j.isci.2020.101315

    • Peer Reviewed / Open Access
  • [Journal Article] The centriole protein CEP76 negatively regulates PLK1 activity in the cytoplasm for proper mitotic progression2020

    • Author(s)
      Yutaka Takeda, Kaho Yamazaki, Kaho Hashimoto, Koki Watanabe, Takumi Chinen, Daiju Kitagawa
    • Journal Title

      Journal of Cell Science

      Volume: 133 Pages: jcs241281

    • DOI

      10.1242/jcs.241281

    • Peer Reviewed / Open Access
  • [Journal Article] Free-Energy Calculation of Ribonucleic Inosines and Its Application to Nearest-Neighbor Parameters2020

    • Author(s)
      Shun Sakuraba, Junichi Iwakiri, Michiaki Hamada, Tomoshi Kameda, Genichiro Tsuji, Yasuaki Kimura, Hiroshi Abe, Kiyoshi Asai
    • Journal Title

      Journal of Chemical Theory and Computation

      Volume: 16 Pages: 5923-5935

    • DOI

      10.1021/acs.jctc.0c00270

    • Peer Reviewed
  • [Journal Article] Patterns of genomic divergence and introgression between Japanese stickleback species with overlapping breeding habitats2020

    • Author(s)
      Mark Ravinet, Manabu Kume, Asano Ishikawa, Jun Kitano
    • Journal Title

      Journal of Evolutionary Biology

      Volume: 34 Pages: 114-127

    • DOI

      10.1111/jeb.13664

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Differences in the contributions of sex linkage and androgen regulation to sex-biased gene expression in juvenile and adult sticklebacks2020

    • Author(s)
      Jun Kitano, Ryo Kakioka, Asano Ishikawa, Atsushi Toyoda, Makoto Kusakabe
    • Journal Title

      Journal of Evolutionary Biology

      Volume: 33 Pages: 1129-1138

    • DOI

      10.1111/jeb.13662

    • Peer Reviewed
  • [Journal Article] Loss-of-function variants in NEK1 are associated with an increased risk of sporadic ALS in the Japanese population2020

    • Author(s)
      Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Jun Yoshimura, Koichiro Doi, Shinichi Morishita, Jun Goto, Tatsushi Toda, Shoji Tsuji
    • Journal Title

      Journal of Human Genetics

      Volume: 66 Pages: 237-241

    • DOI

      10.1038/s10038-020-00830-9

    • Peer Reviewed / Open Access
  • [Journal Article] Targeted deep sequencing of DNA from multiple tissue types improves the diagnostic rate and reveals a highly diverse phenotype of mosaic neurofibromatosis type 22020

    • Author(s)
      Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
    • Journal Title

      Journal of Medical Genetics

    • DOI

      10.1136/jmedgenet-2020-106973

    • Peer Reviewed
  • [Journal Article] Bioinformatics Approaches for Functional Prediction of Long Noncoding RNAs2020

    • Author(s)
      Fayaz Seifuddin, Mehdi Pirooznia
    • Journal Title

      Methods in Molecular Biology

      Volume: 2254 Pages: 1-13

    • DOI

      10.1007/978-1-0716-1158-6_1

    • Peer Reviewed / Open Access
  • [Journal Article] Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli 0145 : H282020

    • Author(s)
      Keiji Nakamura, Kazunori Murase, Mitsuhiko P. Sato, Atsushi Toyoda, Takehiko Itoh, Jacques Georges Mainil, Denis Piérard, Shuji Yoshino, Yasuhiro Gotoh, Yoshitoshi Ogura, Tetsuya Hayashi, et al.
    • Journal Title

      Microbial Genomics

      Volume: 6

    • DOI

      10.1099/mgen.0.000323

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils2020

    • Author(s)
      Ryo Kinoshita-Daitoku, Yoshitoshi Ogura, Kotaro Kiga, Fumito Maruyama, Tomoyo Kondo, Ichiro Nakagawa, Tetsuya Hayashi, Hitomi Mimuro
    • Journal Title

      Microbiology Resource Announcements

      Volume: 9

    • DOI

      10.1128/mra.00105-20

    • Peer Reviewed / Open Access
  • [Journal Article] A ubiquitous subcuticular bacterial symbiont of a coral predator, the crown-of-thorns starfish, in the Indo-Pacific2020

    • Author(s)
      Naohisa Wada, Hideaki Yuasa, Rei Kajitani, Yasuhiro Gotoh, Yoshitoshi Ogura, Dai Yoshimura, Atsushi Toyoda, Sen-Lin Tang, Takehiko Itoh, Tetsuya Hayashi, Nina Yasuda, et al.
    • Journal Title

      Microbiome

      Volume: 8

    • DOI

      10.1186/s40168-020-00880-3

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation2020

    • Author(s)
      Shion Hosoda, Suguru Nishijima, Tsukasa Fukunaga, Masahira Hattori, Michiaki Hamada
    • Journal Title

      Microbiome

      Volume: 8

    • DOI

      10.1186/s40168-020-00864-3

    • Peer Reviewed / Open Access
  • [Journal Article] High Antibiotic Resistance of Helicobacter pylori and Its Associated Novel Gene Mutations among the Mongolian Population2020

    • Author(s)
      Dashdorj Azzaya, Boldbaatar Gantuya, Khasag Oyuntsetseg, Duger Davaadorj, Takashi Matsumoto, Junko Akada, Yoshio Yamaoka
    • Journal Title

      Microorganisms

      Volume: 8 Pages: 1062

    • DOI

      10.3390/microorganisms8071062

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Next-Generation Sequencing of the Whole Bacterial Genome for Tracking Molecular Insight into the Broad-Spectrum Antimicrobial Resistance of Helicobacter pylori Clinical Isolates from the Democratic Republic of Congo2020

    • Author(s)
      Evariste Tshibangu-Kabamba, Patrick de Jesus Ngoma-Kisoko, Vo Phuoc Tuan, Takashi Matsumoto, Junko Akada, Yasutoshi Kido, Ghislain Disashi-Tumba, Yoshio Yamaoka, et al.
    • Journal Title

      Microorganisms

      Volume: 8 Pages: 887

    • DOI

      10.3390/microorganisms8060887

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Autocrine Leukemia Inhibitory Factor Promotes Esophageal Squamous Cell Carcinoma Progression via Src Family Kinase-Dependent Yes-Associated Protein Activation2020

    • Author(s)
      Tetsuro Kawazoe, Hiroshi Saeki, Eiji Oki, Yoshinao Oda, Yoshihiko Maehara, Masaki Mori, Koji Taniguchi
    • Journal Title

      Molecular Cancer Research

      Volume: 18 Pages: 1876-1888

    • DOI

      10.1158/1541-7786.mcr-20-0186

    • Peer Reviewed
  • [Journal Article] Genomic Profiling by ALaP-Seq Reveals Transcriptional Regulation by PML Bodies through DNMT3A Exclusion2020

    • Author(s)
      Misuzu Kurihara, Kagayaki Kato, Chiaki Sanbo, Yasuyuki Ohkawa, Takeshi Fuchigami, Yusuke Miyanari
    • Journal Title

      Molecular Cell

      Volume: 78 Pages: 493-505

    • DOI

      10.1016/j.molcel.2020.04.004

    • Peer Reviewed
  • [Journal Article] Complete Genome Sequence Data of Nonpathogenic Strain Rhizobium vitis VAR03-1, a Biological Control Agent for Grapevine Crown Gall Disease2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1451-1453

    • DOI

      10.1094/mpmi-07-20-0181-a

    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence Data of Tumorigenic Rhizobium vitis Strain VAT03-9, a Causal Agent of Grapevine Crown Gall Disease2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1280-1282

    • DOI

      10.1094/mpmi-07-20-0180-a

    • Peer Reviewed / Open Access
  • [Journal Article] Complete Genome Sequence Data of Nonpathogenic and Nonantagonistic Strain of Rhizobium vitis VAR06-30 Isolated From Grapevine Rhizosphere2020

    • Author(s)
      Yoshiteru Noutoshi, Atsushi Toyoda, Tomoya Ishii, Kirara Saito, Megumi Watanabe, Akira Kawaguchi
    • Journal Title

      Molecular Plant-Microbe Interactions®

      Volume: 33 Pages: 1283-1285

    • DOI

      10.1094/mpmi-07-20-0182-a

    • Peer Reviewed / Open Access
  • [Journal Article] Reconstitution of the oocyte transcriptional network with transcription factors2020

    • Author(s)
      Nobuhiko Hamazaki, Hirohisa Kyogoku, Hiromitsu Araki, Fumihito Miura, Chisako Horikawa, Norio Hamada, So Shimamoto, Orie Hikabe, Kinichi Nakashima, Tomoya S. Kitajima, Takashi Ito, Harry G. Leitch, Katsuhiko Hayashi
    • Journal Title

      Nature

      Volume: 589 Pages: 264-269

    • DOI

      10.1038/s41586-020-3027-9

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli2020

    • Author(s)
      Tomoya Maeda, Junichiro Iwasawa, Hazuki Kotani, Natsue Sakata, Masako Kawada, Takaaki Horinouchi, Aki Sakai, Kumi Tanabe, Chikara Furusawa
    • Journal Title

      Nature Communications

      Volume: 11

    • DOI

      10.1038/s41467-020-19713-w

    • Peer Reviewed / Open Access
  • [Journal Article] The Polycomb group protein Ringl regulates dorsoventral patterning of the mouse telencephalon2020

    • Author(s)
      Hikaru Eto, Yusuke Kishi, Nayuta Yakushiji-Kaminatsui, Hiroki Sugishita, Shun Utsunomiya, Haruhiko Koseki, Yukiko Gotoh
    • Journal Title

      Nature Communications

      Volume: 11

    • DOI

      10.1038/s41467-020-19556-5

    • Peer Reviewed / Open Access
  • [Journal Article] Transient IGF-1R inhibition combined with osimertinib eradicates AXL-low expressing EGFR mutated lung cancer2020

    • Author(s)
      Rong Wang, Tadaaki Yamada, Kenji Kita, Hirokazu Taniguchi, Sachiko Arai, Koji Fukuda, Minoru Terashima, Hisanori Uehara, Xujun Han, Kunio Matsumoto, Wei Wang, Takeshi Suzuki, Seiji Yano, et al.
    • Journal Title

      Nature Communications

      Volume: 11

    • DOI

      10.1038/s41467-020-18442-4

    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide association meta-analysis identifies GP2 gene risk variants for pancreatic cancer2020

    • Author(s)
      Yingsong Lin, Masahiro Nakatochi, Yasuyuki Hosono, Hidemi Ito, Yoichiro Kamatani, Akihito Inoko, Hiromi Sakamoto, Fumihiko Matsuda, Michiaki Kubo, Shogo Kikuchi, Keitaro Matsuo, et al.
    • Journal Title

      Nature Communications

      Volume: 11

    • DOI

      10.1038/s41467-020-16711-w

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] RNA interference-independent reprogramming of DNA methylation in Arabidopsis2020

    • Author(s)
      Taiko Kim To, Yuichiro Nishizawa, Soichi Inagaki, Yoshiaki Tarutani, Sayaka Tominaga, Atsushi Toyoda, Asao Fujiyama, Fédéric Berger, Tetsuji Kakutani
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 1455-1467

    • DOI

      10.1038/s41477-020-00810-z

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Design principles of a minimal auxin response system2020

    • Author(s)
      Hirotaka Kato, Sumanth K. Mutte, Hidemasa Suzuki, Isidro Crespo, Shubhajit Das, Tatyana Radoeva, Mattia Fontana, D. Roeland Boer, Ryuichi Nishihama, Takayuki Kohchi, Dolf Weijers, et al.
    • Journal Title

      Nature Plants

      Volume: 6 Pages: 473-482

    • DOI

      10.1038/s41477-020-0662-y

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Aberrant mucosal immunoreaction to tonsillar microbiota in immunoglobulin A nephropathy2020

    • Author(s)
      Hiroki Yamaguchi, Shin Goto, Nao Takahashi, Masafumi Tsuchida, Hirofumi Watanabe, Suguru Yamamoto, Yoshikatsu Kaneko, Koichi Higashi, Hiroshi Mori, Yukio Nakamura, Arata Horii, Ken Kurokawa, Ichiei Narita
    • Journal Title

      Nephrology Dialysis Transplantation

      Volume: 36 Pages: 75-86

    • DOI

      10.1093/ndt/gfaa223

    • Peer Reviewed / Open Access
  • [Journal Article] Splice-site mutations in KIF5A in the Japanese case series of amyotrophic lateral sclerosis2020

    • Author(s)
      Hiroya Naruse, Hiroyuki Ishiura, Jun Mitsui, Yuji Takahashi, Takashi Matsukawa, Kaori Sakuishi, Kiyotaka Nakamagoe, Zenshi Miyake, Akira Tamaoka, Shinichi Morishita, Tatsushi Toda, Shoji Tsuji, et al.
    • Journal Title

      neurogenetics

      Volume: 22

    • DOI

      10.1007/s10048-020-00626-1

    • Peer Reviewed / Open Access
  • [Journal Article] Orobanchaceae parasite-host interactions2020

    • Author(s)
      J. Musembi Mutuku, Songkui Cui, Satoko Yoshida, Ken Shirasu
    • Journal Title

      New Phytologist

      Volume: 230 Pages: 46-59

    • DOI

      10.1111/nph.17083

    • Peer Reviewed / Open Access
  • [Journal Article] The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation2020

    • Author(s)
      Kei K. Ito, Koki Watanabe, Dai ju Kitagawa
    • Journal Title

      Non-Coding RNA

      Volume: 6 Pages: 13

    • DOI

      10.3390/ncrna6010013

    • Peer Reviewed
  • [Journal Article] Exchange of endogenous and heterogeneous yeast terminators in Pichia pastoris to tune mRNA stability and gene expression2020

    • Author(s)
      Yoichiro Ito, Goro Terai, Misa Ishigami, Noriko Hashiba, Yasuyuki Nakamura, Takahiro Bamba, Ryota Kumokita, Tomohisa Hasunuma, Kiyoshi Asai, Jun Ishii, Akihiko Kondo
    • Journal Title

      Nucleic Acids Research

      Volume: 48 Pages: 13000-13012

    • DOI

      10.1093/nar/gkaa1066

    • Peer Reviewed / Open Access
  • [Journal Article] Improving the prediction accuracy of protein abundance in Escherichia coli using mRNA accessibility2020

    • Author(s)
      Goro Terai, Kiyoshi Asai
    • Journal Title

      Nucleic Acids Research

      Volume: 48 Pages: e81-e81

    • DOI

      10.1093/nar/gkaa481

    • Peer Reviewed / Open Access
  • [Journal Article] Hereditary pancreatitis model by blastocyst complementation in mouse2020

    • Author(s)
      Ayumu Asai, Masamitsu Konno, Koichi Kawamoto, Ayako Isotani, Masaki Mori, Hidetoshi Eguchi, Yuichiro Doki, Takahiro Arai, Hideshi Ishii
    • Journal Title

      Oncotarget

      Volume: 11 Pages: 2061-2073

    • DOI

      10.18632/oncotarget.27595

    • Peer Reviewed / Open Access
  • [Journal Article] Escherichia coli 08 : H8 Carrying a Novel Variant of the Heat-Labile Enterotoxin LT2 Gene Caused Outbreaks of Diarrhea2020

    • Author(s)
      Kai Ishimaru, Mari Sasaki, Hiroshi Narimatsu, Yoko Arimizu, Yasuhiro Gotoh, Keiji Nakamura, Tetsuya Hayashi, Yoshitoshi Ogura
    • Journal Title

      Open Forum Infectious Diseases

      Volume: 7 Pages: ofaa021

    • DOI

      10.1093/ofid/ofaa021

    • Peer Reviewed / Open Access
  • [Journal Article] Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks2020

    • Author(s)
      Yo Y. Yamasaki, Ryo Kakioka, Hiroshi Takahashi, Atsushi Toyoda, Atsushi J. Nagano, Yoshiyasu Machida, Peter R. Moller, Jun Kitano
    • Journal Title

      Philosophical Transactions of the Royal Society B : Biological Sciences

      Volume: 375 Pages: 20190548

    • DOI

      10.1098/rstb.2019.0548

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Arabidopsis SMN2/HEN2, Encoding DEAD-Box RNA Helicase, Governs Proper Expression of the Resistance Gene SMN1/RPS6 and Is Involved in Dwarf, Autoimmune Phenotypes of mekk1 and mpk4 Mutants2020

    • Author(s)
      Momoko Takagi, Naoki Iwamoto, Yuta Kubo, Takayuki Morimoto, Hiroki Takagi, Fuminori Takahashi, Takumi Nishiuchi, Keisuke Tanaka, Ken Shirasu, Kazuya Ichimura, et al.
    • Journal Title

      Plant and Cell Physiology

      Volume: 61 Pages: 1507-1516

    • DOI

      10.1093/pcp/pcaa071

    • Peer Reviewed / Open Access
  • [Journal Article] Intellectual disability-associated gain-of-function mutations in CERT1 that encodes the ceramide transport protein CERT2020

    • Author(s)
      Hiroaki Murakami, Norito Tamura, Yumi Enomoto, Kentaro Shimasaki, Kenji Kurosawa, Kentaro Hanada
    • Journal Title

      PLOS ONE

      Volume: 15 Pages: e0243980

    • DOI

      10.1371/journal.pone.0243980

    • Peer Reviewed / Open Access
  • [Journal Article] Whole-exome sequencing of 79 xenografts as a potential approach for the identification of genetic variants associated with sensitivity to cytotoxic anticancer drugs2020

    • Author(s)
      Chihiro Udagawa, Yasushi Sasaki, Yasuhiro Tanizawa, Hiroshi Suemizu, Yasuyuki Ohnishi, Yasukazu Nakamura, Takashi Tokino, Hitoshi Zembutsu
    • Journal Title

      PLOS ONE

      Volume: 15 Pages: e0239614

    • DOI

      10.1371/journal.pone.0239614

    • Peer Reviewed / Open Access
  • [Journal Article] Serum pepsinogens as a gastric cancer and gastritis biomarker in South and Southeast Asian populations2020

    • Author(s)
      Muhammad Miftahussurur, Langgeng Agung Waskito, Hafeza Aftab, Ratha-korn Vilaichone, Phawinee Subsomwong, Iswan Abbas Nusi, Ari Fahrial Syam, Varocha Mahachai, Yoshio Yamaoka, et al.
    • Journal Title

      PLOS ONE

      Volume: 15 Pages: e0230064

    • DOI

      10.1371/journal.pone.0230064

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter2020

    • Author(s)
      Kaito C, Yoshikai H, Wakamatsu A, Miyashita A, Matsumoto Y, Fujiyuki T, Kato M, Ogura Y, Hayashi T, Isogai T, Sekimizu K
    • Journal Title

      PLOS Pathogens

      Volume: 16 Issue: 4 Pages: e1008469

    • DOI

      10.1371/journal.ppat.1008469

    • Peer Reviewed / Open Access
  • [Journal Article] HMGB1-mediated chromatin remodeling attenuatesI124gene expression for the protection from allergic contact dermatitis2020

    • Author(s)
      Naoyuki Senda, Hideyuki Yanai, Sana Hibino, Lei Li, Yu Mizushima, Tomomitsu Miyagaki, Mai Saeki, Yusuke Kishi, Sho Hangai, Junko Nishio, Makoto Sugaya, Tadatsugu Taniguchi, Shinichi Sato
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 118 Pages: e2022343118

    • DOI

      10.1073/pnas.2022343118

    • Peer Reviewed
  • [Journal Article] Fruit setting rewires central metabolism via gibberellin cascades2020

    • Author(s)
      Yoshihito Shinozaki, Bertrand P. Beauvoit, Masaru Takahara, Shuhei Hao, Kentaro Ezura, Yutaka Suzuki, Satoshi Kuhara, Camille Bénard, Duyen Prodhomme, Yves Gibon, Hiroshi Ezura, Tohru Ariizumi, et al.
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 117 Pages: 23970-23981

    • DOI

      10.1073/pnas.2011859117

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Rapid and ongoing evolution of repetitive sequence structures in human centromeres2020

    • Author(s)
      Yuta Suzuki, Eugene W. Myers, Shinichi Morishita
    • Journal Title

      Science Advances

      Volume: 6 Pages: eabd9230

    • DOI

      10.1126/sciadv.abd9230

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Ethylene signaling mediates host invasion by parasitic plants2020

    • Author(s)
      Songkui Cui, Tomoya Kubota, Tomoaki Nishiyama, Juliane K. Ishida, Shuji Shigenobu, Tomoko F. Shibata, Atsushi Toyoda, Mitsuyasu Hasebe, Ken Shirasu, Satoko Yoshida
    • Journal Title

      Science Advances

      Volume: 6 Pages: eabc2385

    • DOI

      10.1126/sciadv.abc2385

    • Peer Reviewed / Open Access
  • [Journal Article] Staphylococcus Agr virulence is critical for epidermal colonization and associates with atopic dermatitis development2020

    • Author(s)
      Yuumi Nakamura, Hiroki Takahashi, Akiko Takaya, Yuzaburo Inoue, Yuki Katayama, Yoko Kusuya, Tatsuma Shoji, Sanami Takada, Hiroyuki Matsue, Gabriel Núñez, Naoki Shimojo, et al.
    • Journal Title

      Science Translational Medicine

      Volume: 12 Pages: eaay4068

    • DOI

      10.1126/scitranslmed.aay4068

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Batesian mimicry has evolved with deleterious effects of the pleiotropic gene doublesex2020

    • Author(s)
      Shinya Komata, Tasuku Kitamura, Haruhiko Fujiwara
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-78055-1

    • Peer Reviewed / Open Access
  • [Journal Article] Expression profiling of sexually dimorphic genes in the Japanese quail, Coturnix japonica2020

    • Author(s)
      Miki Okuno, Shuntaro Miyamoto, Takehiko Itoh, Masahide Seki, Yutaka Suzuki, Shusei Mizushima, Asato Kuroiwa
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-77094-y

    • Peer Reviewed / Open Access
  • [Journal Article] ARID1A protein expression is retained in ovarian endometriosis with ARID1A loss-of-function mutations : implication for the two-hit hypothesis2020

    • Author(s)
      Nozomi Yachida, Kosuke Yoshihara, Kazuaki Suda, Hirofumi Nakaoka, Haruka Ueda, Kentaro Sugino, Manako Yamaguchi, Yutaro Mori, Kaoru Yamawaki, Ituro Inoue, Takayuki Enomoto, et al.
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-71273-7

    • Peer Reviewed / Open Access
  • [Journal Article] A possible beneficial effect of Bacteroides on faecal lipopolysaccharide activity and cardiovascular diseases2020

    • Author(s)
      Naofumi Yoshida, Tomoya Yamashita, Shigenobu Kishino, Hikaru Watanabe, Kengo Sasaki, Daisuke Sasaki, Tokiko Tabata, Yuta Sugiyama, Takuji Yamada, Jun Ogawa, Ken-ichi Hirata, et al.
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-69983-z

    • Peer Reviewed / Open Access
  • [Journal Article] Comprehensive investigation of RNF213 nonsynonymous variants associated with intracranial artery stenosis2020

    • Author(s)
      Hiroki Hongo, Satoru Miyawaki, Hideaki Imai, Masahiro Shimizu, Shinichi Yagi, Jun Mitsui, Hiroyuki Ishiura, Jun Yoshimura, Koichiro Doi, Wei Qu, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito, et al.
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-68888-1

    • Peer Reviewed / Open Access
  • [Journal Article] Essential factors involved in the precise targeting and insertion of telomere-specific non-LTR retrotransposon, SART1Bm2020

    • Author(s)
      Narisu Nichuguti, Haruhiko Fujiwara
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-65925-x

    • Peer Reviewed / Open Access
  • [Journal Article] Theoretical analyses and experimental validation of the effects caused by the fluorinated substituent modification of DNA2020

    • Author(s)
      Jun Koseki, Masamitsu Konno, Ayumu Asai, Naohiro Horie, Kenta Tsunekuni, Koichi Kawamoto, Satoshi Obika, Yuichiro Doki, Masaki Mori, Hideshi Ishii
    • Journal Title

      Scientific Reports

      Volume: 10

    • DOI

      10.1038/s41598-020-57899-7

    • Peer Reviewed / Open Access
  • [Journal Article] Directed induction of alveolar type I cells derived from pluripotent stem cells via Wnt signaling inhibition2020

    • Author(s)
      Shuhei Kanagaki, Satoshi Ikeo, Takahiro Suezawa, Yuki Yamamoto, Masahide Seki, Toyohiro Hirai, Masatoshi Hagiwara, Yutaka Suzuki, Shimpei Gotoh
    • Journal Title

      STEM CELLS

      Volume: 39 Pages: 156-169

    • DOI

      10.1002/stem.3302

    • Peer Reviewed / Open Access
  • [Journal Article] Contrasting Patterns of Microbial Communities in Glacier Cryoconite of Nepali Himalaya and Greenland, Arctic2020

    • Author(s)
      Purnima Singh, Masaharu Tsuji, Shiv Mohan Singh, Nozomu Takeuchi
    • Journal Title

      Sustainability

      Volume: 12 Pages: 6477

    • DOI

      10.3390/su12166477

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Soil Yeasts in the Vicinity of Syowa Station, East Antarctica : Their Diversity and Extracellular Enzymes, Cold Adaptation Strategies, and Secondary Metabolites2020

    • Author(s)
      Masaharu Tsuji, Sakae Kudoh
    • Journal Title

      Sustainability

      Volume: 12 Pages: 4518

    • DOI

      10.3390/su12114518

    • Peer Reviewed / Open Access
  • [Journal Article] Statistical Validation Verifies That Enantiomorphic States of Chiral Cells Are Determinant Dictating the Left-or Right-Handed Direction of the Hindgut Rotation in Drosophila2020

    • Author(s)
      Tomoki Ishibashi, Mikiko Inaki, Kenji Matsuno
    • Journal Title

      Symmetry

      Volume: 12 Pages: 1991

    • DOI

      10.3390/sym12121991

    • Peer Reviewed / Open Access
  • [Journal Article] NUDT21 Links Mitochondrial IPS-1 to RLR-Containing Stress Granules and Activates Host Antiviral Defense2020

    • Author(s)
      Saeko Aoyama-Ishiwatari, Tomohiko Okazaki, Shun-ichiro Iemura, Tohru Natsume, Yasushi Okada, Yukiko Gotoh
    • Journal Title

      The Journal of Immunology

      Volume: 206 Pages: 154-163

    • DOI

      10.4049/jimmunol.2000306

    • Peer Reviewed / Open Access
  • [Journal Article] MeCP2 Levels Regulate the 3D Structure of Heterochromatic Foci in Mouse Neurons2020

    • Author(s)
      Aya Ito-Ishida, Steven A. Baker, Roy V. Sillitoe, Yaling Sun, Jian Zhou, Yukiteru Ono, Junichi Iwakiri, Michisuke Yuzaki, Huda Y. Zoghbi
    • Journal Title

      The Journal of Neuroscience

      Volume: 40 Pages: 8746-8766

    • DOI

      10.1523/jneurosci.1281-19.2020

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Targeted gene disruption of ATP synthases 6-1 and 6-2 in the mitochondrial genome of Arabidopsis thaliana by mitoTALENs2020

    • Author(s)
      Shin-ichi Arimura, Hiroki Ayabe, Hajime Sugaya, Miki Okuno, Yoshiko Tamura, Yu Tsuruta, Yuta Watari, Shungo Yanase, Takaki Yamauchi, Takehiko Itoh, Atsushi Toyoda, Hideki Takanashi, Nobuhiro Tsutsumi
    • Journal Title

      The Plant Journal

      Volume: 104 Pages: 1459-1471

    • DOI

      10.1111/tpj.15041

    • Peer Reviewed
  • [Journal Article] The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES22020

    • Author(s)
      Lilan Luo, Sayuri Ando, Yuki Sakamoto, Takanori Suzuki, Hiro Takahashi, Nanako Ishibashi, Shoko Kojima, Daisuke Kurihara, Tetsuya Higashiyama, Michiko Sasabe, Yasunori Machida, et al.
    • Journal Title

      The Plant Journal

      Volume: 101 Pages: 1118-1134

    • DOI

      10.1111/tpj.14579

    • Peer Reviewed / Open Access
  • [Journal Article] Whole Genome Sequencing Reveals Virulence Potentials of Helicobacter pylori Strain KE21 Isolated from a Kenyan Patient with Gastric Signet Ring Cell Carcinoma2020

    • Author(s)
      Catherine Mwangi, Stephen Njoroge, Evariste Tshibangu-Kabamba, Zahir Moloo, Allan Rajula, Smita Devani, Takashi Matsumoto, Kimang' a Nyerere, Samuel Kariuki, Gunturu Revathi, Yoshio Yamaoka
    • Journal Title

      Toxins

      Volume: 12 Pages: 556

    • DOI

      10.3390/toxins12090556

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Biofilm Formation and Antibiotic Resistance Phenotype of Helicobacter pylori Clinical Isolates2020

    • Author(s)
      Kartika Afrida Fauzia, Muhammad Miftahussurur, Ari Fahrial Syam, Langgeng Agung Waskito, Dalla Doohan, Yudith Annisa Ayu Rezkitha, Takashi Matsumoto, Shigeru Kamiya, Yoshio Yamaoka, et al.
    • Journal Title

      Toxins

      Volume: 12 Pages: 473

    • DOI

      10.3390/toxins12080473

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Discovery of the Gene Encoding a Novel Small Serum Protein (SSP) of Protobothrops flavoviridis and the Evolution of SSPs2020

    • Author(s)
      Kento Inamaru, Ami Takeuchi, Marie Maeda, Hiroki Shibata, Yasuyuki Fukumaki, Naoko Oda-Ueda, Shosaku Hattori, Motonori Ohno, Takahito Chijiwa
    • Journal Title

      Toxins

      Volume: 12 Pages: 177

    • DOI

      10.3390/toxins12030177

    • Peer Reviewed / Open Access
  • [Journal Article] RNA N6-Methyladenosine and the Regulation of RNA Localization and Function in the Brain2020

    • Author(s)
      Sachithrani U. Madugalle, Kate Meyer, Dan Ohtan Wang, Timothy W. Bredy
    • Journal Title

      Trends in Neurosciences

      Volume: 43 Pages: 1011-1023

    • DOI

      10.1016/j.tins.2020.09.005

    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Discovery of unique African Helicobacter pylori CagA-multimerization motif in the Dominican Republic2020

    • Author(s)
      Takaaki Ono, Modesto Cruz, Hiroyuki Nagashima, Phawinee Subsomwong, Junko Akada, Takashi Matsumoto, Tomohisa Uchida, Rumiko Suzuki, Celso Hosking, José A Jiménez Abreu, Yoshio Yamaoka
    • Journal Title

      World Journal of Gastroenterology

      Volume: 26 Pages: 7118-7130

    • DOI

      10.3748/wjg.v26.i45.7118

    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Analysis of the Mitochondrial Genomes of Japanese Wolf Specimens in the Siebold Collection, Leiden2020

    • Author(s)
      Shuichi Matsumura, Yohey Terai, Hitomi Hongo, Naotaka Ishiguro
    • Journal Title

      Zoological Science

      Volume: 38 Pages: 60-66

    • DOI

      10.2108/zs200019

    • Peer Reviewed / Open Access
  • [Journal Article] Cooperation of Spaln and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment2020

    • Author(s)
      Osamu Gotoh
    • Journal Title

      Methods in Molecular Biology

      Volume: 2231 Pages: 71-88

    • DOI

      10.1007/978-1-0716-1036-7_5

  • [Journal Article] RNA Modifications in the Central Nervous System2020

    • Author(s)
      Dan Ohtan Wang
    • Journal Title

      The Oxford Handbook of Neuronal Protein Synthesis

    • DOI

      10.1093/oxfordhb/9780190686307.013.23

    • Open Access
  • [Journal Article] 実験用マウスを用いた放射線被ばくの次世代遺伝影響の解析2020

    • Author(s)
      佐藤康成、内村有邦
    • Journal Title

      広島医学

      Volume: 73 Pages: 228-232

  • [Journal Article] 染色体分配に必須なセントロメアのクロマチン構造2020

    • Author(s)
      堀哲也, 深川竜郎
    • Journal Title

      細胞

      Volume: 52 Pages: 342-347

  • [Journal Article] キンギョの多様な表現型と全ゲノム重複 : 疾患モデル動物としての展開2020

    • Author(s)
      大森 義裕
    • Journal Title

      生体の科学

      Volume: 71 Pages: 68-73

    • DOI

      10.11477/mf.2425201122

  • [Journal Article] 長寿フロントラインAlzheimer病剖検脳の神経細胞特異的メチル化解析から明らかになった、神経変性におけるDNA傷害蓄積の重要性2020

    • Author(s)
      間野 達雄
    • Journal Title

      エイジングアンドヘルス

      Volume: 93 Pages: 38-41

  • [Presentation] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria2021

    • Author(s)
      Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
    • Organizer
      Applied Bioinformatics and Public Health Microbiology
    • Int'l Joint Research
  • [Presentation] Mechanisms of centriole duplication in human cells2021

    • Author(s)
      北川大樹
    • Organizer
      EMBO Centrosomes and Spindle Pole Bodies meeting
    • Int'l Joint Research / Invited
  • [Presentation] Genome of Jomon people and peopling history of East Eurasians2021

    • Author(s)
      Hiroki Oota
    • Organizer
      Genome Concept Centennial Conference
    • Int'l Joint Research / Invited
  • [Presentation] Genome evolution for cold adaptation in experimental populations of Drosophila albomicans2021

    • Author(s)
      田村浩一郎
    • Organizer
      Genome Concept Centennial Conference
    • Int'l Joint Research / Invited
  • [Presentation] Tuning water use efficiency and drought tolerance in wheat using abscisic acid receptors2021

    • Author(s)
      Masanori Okamoto
    • Organizer
      International Workshop on Optics, Biology, and Related Technologies
    • Int'l Joint Research / Invited
  • [Presentation] Protective effect of common and rare variants of URAT1/SLC22A12 on gout2021

    • Author(s)
      Yu Toyoda, Yusuke Kawamura, Akiyoshi Nakayama, Hirofumi Nakaoka, Toshihide Higashino, Seiko Shimizu, Hiroshi Ooyama, Keito Morimoto, Naohiro Uchida, Ryuichiro Shigesawa, Kenji Takeuchi, Ituro Inoue, Kimiyoshi Ichida, Hiroshi Suzuki, Nariyoshi Shinomiya, Tappei Takada, Hirotaka Matsuo
    • Organizer
      The 19th International Purine and Pyrimidine Symposium
    • Int'l Joint Research
  • [Presentation] Robust Platform of Neuronal Subtype-specific Differentiation Using Transcription Factors forning Applications2021

    • Author(s)
      石川充
    • Organizer
      第94回日本薬理学会年会
    • Invited
  • [Presentation] 細胞周期が遺伝子発現不均質性を生み出す可能性の検証2021

    • Author(s)
      梶谷卓也
    • Organizer
      日本生化学会北陸支部例会
    • Invited
  • [Presentation] 南極に生息している菌類とその産業への利用に向けて2021

    • Author(s)
      辻雅晴
    • Organizer
      バイオインダストリー協会・未来へのバイオ技術勉強会
    • Invited
  • [Presentation] 神経幹細胞にニューロン分化能を賦与するエピジェネティック・クロマチン制御機構の解明2021

    • Author(s)
      岸雄介
    • Organizer
      第14回日本エピジェネティクス研究会年会
    • Invited
  • [Presentation] 微生物ゲノム、正面から見るか、裏から見るか。あるいは、いわゆるタンパク質立体構造予測問題の“解決”に思うこと。2021

    • Author(s)
      岩崎渉
    • Organizer
      第15回日本ゲノム微生物学会年会
    • Invited
  • [Presentation] 経験が脳を発達させる仕組み-遺伝子発現制御の観点から-2021

    • Author(s)
      酒井 晶子
    • Organizer
      第1回 : マルチNGSオミクス解析研究会
    • Invited
  • [Presentation] がんに起因する宿主の病態生理に関する研究2021

    • Author(s)
      河岡慎平
    • Organizer
      第38回日本肥満症治療学会学術集会
    • Invited
  • [Presentation] 多様なアブシシン酸受容体の生理機能の解明を目指した人工分子の開発と利用2021

    • Author(s)
      岡本昌憲
    • Organizer
      第62回日本植物生理学会年会
    • Invited
  • [Presentation] 進化実験により細菌の病原性を理解する2021

    • Author(s)
      垣内力
    • Organizer
      第94回日本細菌学会総会
    • Invited
  • [Presentation] 湖沼調査から新たなるブレークスルーを目指して2021

    • Author(s)
      野崎久義
    • Organizer
      日本藻類学会第45回大会
    • Invited
  • [Presentation] どのプラスミドが, どのようなときに, どこからどこに移るのだろうか2021

    • Author(s)
      新谷政己
    • Organizer
      日本農芸化学会2021年度大会
    • Invited
  • [Presentation] 植物の乾燥ストレス応答を制御する分子開発2021

    • Author(s)
      岡本昌憲
    • Organizer
      日本農薬学会第46回大会
    • Invited
  • [Presentation] Global view of translation and mRNA levels in the Arabidopsis deadenylase mutants2021

    • Author(s)
      Taku Tokunaka, Toshihiro Arae, Seidai Takamatsu, Atsushi Toyoda, Yukako Chiba
    • Organizer
      The 62th Annual Meeting of JSPP
  • [Presentation] カキ‘平核無’に生じた小果変異の起源と多面発現2021

    • Author(s)
      西山総一郎、王盛、Tam Chun-Lai、田尾龍太郎
    • Organizer
      園芸学会令和3年度春季大会
  • [Presentation] ゼニゴケにおけるRNAポリメラーゼⅣ、Ⅴの機能解析2021

    • Author(s)
      池田ひかり、都筑正行、渡邊雄一郎
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] クロマツにおけるRNA-Seqデータからの高密度連鎖地図の作製2021

    • Author(s)
      平尾知士、平川英樹、松永孝治、三嶋賢太郎、能勢美峰
    • Organizer
      第132回日本森林学会大会
  • [Presentation] DUX4の発現は筋細胞で非コード領域からの転写を促進する2021

    • Author(s)
      三橋弘明
    • Organizer
      第8回骨格筋生物学研究会
  • [Presentation] 菌血症における病原菌の患者内多様性の解明に向けた解析パイプラインの構築2021

    • Author(s)
      園田 大輝, 後藤 恭宏, 西田 留梨子, 下野 信行, 中村佳司, 林哲也
    • Organizer
      第94回日本細菌学会総会
  • [Presentation] 非コードRNAを含有する熱ストレス応答性の新規核内構造体, HiNoCo-bodyの同定2021

    • Author(s)
      小野口玲菜、秋光信佳
    • Organizer
      日本薬学会第141年会(広島)
  • [Presentation] Genomic identification and characterization of sex-determining locus of Takifugu niphobles by a chromosome scale genome assembly2021

    • Author(s)
      Kabir Ahammad, Risa Ieda, Daigaku Fujikawa, Shotaro Hirase, Takashi Koyama, Atsushi Toyota, Shigehiro Kuraku Sho Hosoya, Kiyoshi KikuchiKabir Ahammad, Risa Ieda, Daigaku Fujikawa, Shotaro Hirase, Takashi Koyama, Atsushi Toyota, Shigehiro Kuraku Sho Hosoya, Kiyoshi Kikuchi
    • Organizer
      令和3年度日本水産学会春季大会
  • [Presentation] ミドリイガイ全ゲノム配列の解明と足糸関連遺伝子の探索2021

    • Author(s)
      井上広滋、善岡祐輝、田中裕之、金城梓、佐々三依子、植田育男、新里宙也、豊田敦、伊藤武彦
    • Organizer
      令和3年度日本水産学会春季大会
  • [Presentation] ホモタリック種ボルボックス進化基盤解明のための比較ゲノム解析2021

    • Author(s)
      山本荷葉子、浜地貴志、豊岡博子、松﨑令、西村芳樹、河地 正伸、野崎久義
    • Organizer
      第14回クラミドモナス研究会オンライン
  • [Presentation] Paused iPS細胞を用いたKLF4量依存的エピジェネティクス制御機構の解析2021

    • Author(s)
      西村健、Arun Kumar、岸本拓実、久武幸司
    • Organizer
      第14回日本エピジェネティクス研究会年会
  • [Presentation] RNA polymerase Ⅱによる転写とヒストン修飾の安定性制御2021

    • Author(s)
      梶谷卓也
    • Organizer
      第14回日本エピジェネティクス研究会年会
  • [Presentation] MeCP2のマイクロRNAプロセッシングを介した神経幹細胞分化制御機構2021

    • Author(s)
      中嶋秀行、中島欽一
    • Organizer
      第14回神経発生討論会
  • [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNA結合タンパク質の探索2021

    • Author(s)
      北嶋洋志、丸山玲緒、山本英一郎、新沼 猛、甲斐正広、仲瀬裕志、時野隆至、鈴木 拓
    • Organizer
      第14回日本エピジェネティクス研究会年会
  • [Presentation] ATAC-seq法およびCUT&TAG法を用いたヒト精子エピゲノムプロフィールの解析2021

    • Author(s)
      牧野吉倫、中戸隆一郎、有馬隆博、鈴木譲、兼子智、岡田由紀
    • Organizer
      第14回日本エピジェネティクス研究会年会
  • [Presentation] コヒーシンローダーNipb1は幼若脳の経験依存的な抑制性ニューロン発達に必要である2021

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第14回日本エピジェネティクス研究会年会
  • [Presentation] Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria2021

    • Author(s)
      Koji Yahara, Masato Suzuki, Aki Hirabayashi, Wataru Suda, Masahira Hattori, Yutaka Suzuki, Yusuke Okazaki
    • Organizer
      第15回日本ゲノム微生物学会年会
  • [Presentation] 独立栄養性亜硝酸酸化細菌のプロテオームに対する有機物の影響2021

    • Author(s)
      石井 拳人、藤谷 拓嗣、Barth F. Smets、常田 聡
    • Organizer
      第15回日本ゲノム微生物学会年会
  • [Presentation] 亜硝酸酸化細菌Nitrobacterの新株が持つ固有の窒素代謝経路と亜酸化窒素還元機能の発見2021

    • Author(s)
      髙橋 悠、石井 拳人、藤谷 拓嗣、関口 勇地、末永 俊和、寺田 昭彦、廣野 祐平、多胡 香奈子、早津 雅仁、常田 聡
    • Organizer
      第15回日本ゲノム微生物学会年会
  • [Presentation] 微生物統合データベース MicrobeDB. jp version 3とマイクロバイオーム解析2021

    • Author(s)
      森宙史、藤澤貴智、西出浩世、矢口貴志、高橋弘喜、中川善一、山田拓司、内山郁夫、中村保一、黒川顕
    • Organizer
      第15回日本ゲノム微生物学会年会
  • [Presentation] ヒト多能性幹細胞から分化誘導した気道・肺胞オルガノイドの応用2021

    • Author(s)
      後藤 慎平
    • Organizer
      第20回日本再生医療学会総会
  • [Presentation] 造血器腫瘍制御に寄与する食物栄養依存性代謝物の探索2021

    • Author(s)
      陳 茜、田所 優子、司 沙、本田 浩章、平尾 敦
    • Organizer
      第25回造血器腫瘍研究会
  • [Presentation] 生後脳の経験依存的な抑制性ニューロン発達におけるコヒーシンローダーの役割2021

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第38回染色体ワークショプ・第19回核ダイナミクス研究会
  • [Presentation] 植物の再生能力の獲得に関与するエピジェネティック制御因子の機能解析2021

    • Author(s)
      三浦理奈、坂本卓也、澁田未央、大矢恵代、稲垣宗一、鈴木穣、角谷徹二、松永幸大
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] 糸状菌・細菌共生集合体が栄養枯渇環境下での植物生長に果たす役割2021

    • Author(s)
      晝間敬
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] シロイヌナズナのリン枯渇応答制御因子による微生物制御2021

    • Author(s)
      千種亮、岡田健太郎、平野綾刀、Yuniar Devi Utami、篠崎一雄、菊池沙安、藤田美紀、晝間敬、西條雄介
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] シロイヌナズナのカロースによるリン枯渇環境への適応2021

    • Author(s)
      岡田健太郎、谷地洸映、Tan Anh NhiNguyen、李泰洪、菊池沙安、篠崎一雄、菅野里美、藤田美紀、晝間敬、西條雄介
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] シロイヌナズナの葉の発生分化におけるエピジェネティック因子AS2と核小体タンパク質の役割の解明2021

    • Author(s)
      町田千代子、高橋広夫、日比野哲紀、安藤沙友里、岩川秀和、野元美佳、多田正臣、杉山宗隆、小島晶子、町田泰則
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] ゼニゴケにおけるMpCLE2ペプチドシグナル下流因子の探索2021

    • Author(s)
      高橋 剛、清末 知宏、平川 有宇樹
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] Establishment of tip growth of conchocelis in the red alga Neopyropia yezoensis2021

    • Author(s)
      Yuji Hiwatashi, Mizuho Shimada, Nagisa Takada
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] Marpolbase : development of the genome and expression database for the liverwort Marchantia polymorphaMarpolbase : ゼニゴケのための遺伝子情報および発現量データベースの開発2021

    • Author(s)
      谷澤 靖洋, 川村 昇吾, 矢倉 勝, 坂本 美佳, 望月 孝子, 山岡 尚平, 西浜 竜一, 大和 勝幸, 河内 孝之, Liu, Chang, Berger, Frédéric, 中村 保一
    • Organizer
      第62回日本植物生理学会年会
  • [Presentation] 成体イモリ筋組織の培養下の振る舞い~血球因子と二つの筋形成細胞~2021

    • Author(s)
      志賀翔太、千葉親文
    • Organizer
      第7回イモリ型の臓器再生フォーラム
  • [Presentation] Development of in vivo systems for studies on unique tissue patterning during adult newt regeneration2021

    • Author(s)
      Martin Miguel Casco-Robles、千葉親文
    • Organizer
      第7回イモリ型の臓器再生フォーラム
  • [Presentation] 黄色ブドウ球菌はAgrのサイレンシングにより院内感染でのパーシステンスとコンピテンシーを獲得する2021

    • Author(s)
      山崎由里子, 田中麻里, 楠屋陽子, 青山礼華, 大曽根義輝, 高橋弘喜, 中村悠美, 高屋明子
    • Organizer
      第94回日本細菌学会総会
  • [Presentation] イネの3Dゲノムに対して異種染色体の添加が与える影響の解析2021

    • Author(s)
      真弓 彩夏、保坂 碧、安井 秀、野々村 賢一、松永 幸大、坂本 卓也、武田 紀子、山口 佳穂、辻 寛之
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] イオン-遺伝子共発現解析による野生イネのリン欠乏応答2021

    • Author(s)
      大森良弘、藤原徹
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] ユーストマの全ゲノム解読とDNAマーカー開発(学会のプレスリリース課題に選定されたとのことhttps://www.nacos.com/jsb/06/06press.html)2021

    • Author(s)
      川勝 恭子、豊田 敦、永野 惇、川勝 泰二、中野 善公、今村 仁、福田 直子、久松 完、山口 博康、望月 孝子、谷澤 靖洋、坂本 美佳、中村 保一
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] オオムギ2H染色体に座乗する形質転換感受性に関わる遺伝子座TFA3の特性2021

    • Author(s)
      久野 裕、宗森 広美、佐藤 和広
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] 2種の野生種トマトの参照ゲノム配列構築2021

    • Author(s)
      武井瞳、白澤健太、桑原康介、豊田敦、松澤佑馬、飯岡真司、有泉亨
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] ユーストマの全ゲノム解読とDNAマーカー開発2021

    • Author(s)
      川勝 恭子, 豊田 敦, 永野 惇, 川勝 泰二, 中野 善公, 今村 仁, 福田 直子, 久松 完, 山口 博康, 望月 孝子, 谷澤 靖洋, 坂本 美佳, 中村 保一
    • Organizer
      日本育種学会第139回講演会
  • [Presentation] PTTH細胞が脱皮タイミングを制御する神経機構の解析2021

    • Author(s)
      叶田 貴之、伊藤 瑤子、岩見 雅史、木矢 星歌、木矢 剛智
    • Organizer
      日本蚕糸学会第91回大会
  • [Presentation] 腐肉に集まる昆虫の種相及び個体数は微生物やウジを排除した場合どう変わるのか?2021

    • Author(s)
      松島義治、橋詰茜、幸田良介、中島啓裕
    • Organizer
      日本生態学会第68回全国大会
  • [Presentation] 動物の死骸は誰のもの? : 死肉食性昆虫と雑食性食肉目の消費型競争2021

    • Author(s)
      橋詰茜、松島義治、幸田良介、笠原康裕、大舘智志、中島啓裕
    • Organizer
      日本生態学会第68回全国大会
  • [Presentation] クロレラの内部倍数性とAr・Feイオンビーム照射による染色体の分断化と再構築2021

    • Author(s)
      石井公太郎、風間裕介、浅野円花、竹下毅、阿部知子、河野重行
    • Organizer
      日本藻類学会第45回大会
  • [Presentation] ヒメミカヅキモにおける蛍光標識CenH3タンパク質の発現による染色体可視化2021

    • Author(s)
      渡辺実咲、村田隆、堤元佐、大友康平、根本知己、西山智明、土金勇樹、関本弘之
    • Organizer
      日本藻類学会第45回大会
  • [Presentation] シリカ被殻を持つ真核藻類 : パルマ藻・珪藻の比較ゲノム解析2021

    • Author(s)
      伴 広輝、桑田 晃、中村 洋路、佐藤 晋也、吉川 伸哉、山田 和正、一宮 睦雄、緒方 博之
    • Organizer
      日本藻類学会第45回大会
  • [Presentation] 同一不和合性群に属する塩基組成の異なるプラスミドの宿主域比較2021

    • Author(s)
      德田真穂、鈴木治夫、雪真弘、大熊盛也、金原和秀、新谷政己
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] 多摩川流域における薬剤耐性遺伝子の伝播を担うプラスミドの収集と比較2021

    • Author(s)
      中道孝一朗、金子健成、森光矢、森内良太、道羅英夫、金原和秀、二又裕之、新谷 政己
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] 環境中を伝播する新規IncP-1群様プラスミドの取得とその分布2021

    • Author(s)
      金子健成、中道孝一朗、森内良太、道羅英夫、金原和秀、新谷政己
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] 日本各地から取得した自己伝達性IncPromA群プラスミドの特徴の解明2021

    • Author(s)
      山本雪絵、金子健成、中道孝一朗、早川雅也、森内良太、道羅英夫、金原和秀、新谷政己
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] mRNA輸送因子UAP56とURH49による選択的mRNAスプライシング制御機構の解明2021

    • Author(s)
      池田宥哉、藤田賢一、吉岡英惠、増田誠司
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] 核内エキソソームの分解ターゲットとなるpolyA+RNAの解析2021

    • Author(s)
      杉元啓悟、藤原奈央子、瀬尾茂人、増田誠司
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] クエン酸高生産菌Aspergillus tubingensis WU-2223Lのドラフトゲノムの決定2021

    • Author(s)
      吉岡育哲, 高橋弘喜, 楠屋陽子, 矢口貴志, 桐村光太郎
    • Organizer
      日本農芸化学会2021年度大会
  • [Presentation] 輸入植物球根から分離されたヒト病原真菌における農薬耐性進化の可能性2021

    • Author(s)
      萩原大祐, 老木紗予子, 楠屋陽子, 高橋弘喜
    • Organizer
      日本農薬学会第46回大会
  • [Presentation] メラノーマに特化したシーケンスパネルの開発2021

    • Author(s)
      肥田時征、堀本浩平、加藤潤史、佐藤さゆり、藤岡茉生、井戸川雅史、丹下正一朗、時野隆至、宇原 久
    • Organizer
      日本皮膚科学会北海道地方会
  • [Presentation] 菌の植物ホルモン合成クラスターの活性化が植物共生糸状菌Colletotrichum tofieldiaeの寄生化を促す2021

    • Author(s)
      晝間敬、青木誠志郎、川邑菜々美、内山朱美、岩崎渉、西條雄介
    • Organizer
      令和3年度日本植物病理学会大会
  • [Presentation] トラフグ属における初回成熟開始月齢に差をもたらす遺伝機構2021

    • Author(s)
      杉田周平、木元亮太、城夕香、金子智美、佐藤茉菜、吉川壮太、細谷将、菊池潔
    • Organizer
      令和3年度日本水産学会春季大会
  • [Presentation] 3D chromatin structure dynamics during dendritic cell differentiation and activation2020

    • Author(s)
      Daisuke Kurotaki
    • Organizer
      4th KAIST-KU Workshop and Joint Symposium
    • Int'l Joint Research / Invited
  • [Presentation] Liberating the sequencing power to address the real world questions2020

    • Author(s)
      Yutaka Suzuki
    • Organizer
      AIBBC 2020 ONLINE CONFERENCE & WORKSHOPS in the COVID-19 ERA
    • Int'l Joint Research / Invited
  • [Presentation] Regulatory mechanisms of innate immune responses2020

    • Author(s)
      Takeuchi, O
    • Organizer
      FIMSA Immunology course-2020
    • Int'l Joint Research / Invited
  • [Presentation] Toward prediction and control of microbial evolution : Analysis of phenotypic constraints in laboratory evolution2020

    • Author(s)
      Chikara Furusawa
    • Organizer
      Quantitative evolution, phylogeny and ecology : from models to data and back
    • Int'l Joint Research / Invited
  • [Presentation] Characterization of complicated structural variants with local copy-number changes in cancer genomes using PromethION2020

    • Author(s)
      Yutaka Suzuki
    • Organizer
      The 19th International Symposium on Pediatric Neuro-Oncology 2020
    • Int'l Joint Research / Invited
  • [Presentation] Evolutionary relationship between Japanese and Indonesian dogs2020

    • Author(s)
      Yohey Terai
    • Organizer
      Workshop on Whole Genome Sequencing : A Case with Kintamani Dogs
    • Int'l Joint Research / Invited
  • [Presentation] Introduction to Microbial Genome Analysis2020

    • Author(s)
      谷澤靖洋
    • Organizer
      日本-インドネシア遺伝資源バイオインフォマティックスオンライン講習会
    • Int'l Joint Research / Invited
  • [Presentation] Genome Analysis of Eukaryotes2020

    • Author(s)
      坂本美佳
    • Organizer
      日本-インドネシア遺伝資源バイオインフォマティックスオンライン講習会
    • Int'l Joint Research / Invited
  • [Presentation] Characteristics of Mosaic Neurofibromatosis type 2 Revealed by Deep Sequence for Multiple Tissue DNA2020

    • Author(s)
      Yu Teranishi, Satoru Miyawaki, Hiroki Hongo, Shogo Dofuku, Atsushi Okano, Shunsaku Takayanagi, Takahiro Ota, Jun Yoshimura, Wei Qu, Jun Mitsui, Hirofumi Nakatomi, Shinichi Morishita, Shoji Tsuji, Nobuhito Saito
    • Organizer
      2020 European NF Meeting
    • Int'l Joint Research
  • [Presentation] YMPHOID-MYELOID CELL FATE DETERMINATION BY ENDORIBONUCLEASES REGNASE-1 AND -32020

    • Author(s)
      Takuya, U., Yamada, S., Miyazaki, M., Giladi, A., Vandenbon, A., Amit, I., Kawamoto, H., Takeuchi, O.
    • Organizer
      8th Annual Meeting ; International Cytokine & Interferon Society
    • Int'l Joint Research
  • [Presentation] The replication factor MCM10 maintains breast cancer stem-like cells that constitutively experience c-Myc-driven replication stres2020

    • Author(s)
      後藤典子
    • Organizer
      AACR Annual Meeting 2020
    • Int'l Joint Research
  • [Presentation] Molecular and immunological profiling of non-viral hepatocellular carcinoma through multi-omics approach2020

    • Author(s)
      村井 大毅、小玉 尚宏、竹原 徹郎
    • Organizer
      AASLD2020
    • Int'l Joint Research
  • [Presentation] Identification of vitamin K binding protein by magnetic beads labeled derivative to search a novel activity2020

    • Author(s)
      Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
    • Organizer
      ACS Fall 2020 Virtual Meeting & Expo
    • Int'l Joint Research
  • [Presentation] Runx2 defines the osteoblast chromatin landscape in skeletal development2020

    • Author(s)
      Hironori Hojo, Taku Saito, Shoko Onodera, Toshifumi Azuma, Ung-il Chung, Masahide Seki, Yutaka Suzuki, Andrew P. McMahon, Shinsuke Ohba
    • Organizer
      American Society for Bone and Mineral Research
    • Int'l Joint Research
  • [Presentation] Multi-omics and genetic analyses on pathophysiology of host organs in cancer-bearing animals2020

    • Author(s)
      Rin Mizuno, Riyo Konishi, Shinpei Kawaoka
    • Organizer
      Cancer Cachexia Conference
    • Int'l Joint Research
  • [Presentation] Identification of Cell-Free DNA profile in oligometastatic colorectal cancer2020

    • Author(s)
      Masaki Nakamura
    • Organizer
      ESTRO 2020
    • Int'l Joint Research
  • [Presentation] The splicing mechanism that secures large exons encoding intrinsic disordered regions of transcription factors2020

    • Author(s)
      Toshihiko Kawachi Akio Masuda, Jun-ichi Takeda, Mikako Ito, Tomonari Hamaguchi, Kinji Ohno
    • Organizer
      Experimental Biology 2020 Meeting
    • Int'l Joint Research
  • [Presentation] Plasmids with different nucleotide composition showed different host ranges2020

    • Author(s)
      Maho Tokuda, Haruo Suzuki, Masahiro Yuki, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani
    • Organizer
      FEMS online conference on microbiology 2020
    • Int'l Joint Research
  • [Presentation] Broad host range IncPromA group plasmids were widely distributed around different2020

    • Author(s)
      Yukie Yamamoto, Kensei Kaneko, Masaya Hayakawa, Ryota Moriuchi, Hideo Dora, Kazuhide Kimbara Masaki Shintani
    • Organizer
      FEMS online conference on microbiology 2020
    • Int'l Joint Research
  • [Presentation] Development of whole-genome sequencing system to detect induced mutations by lifetime-exposure for several generations to low-dose radiation.2020

    • Author(s)
      Yoichi Gondo
    • Organizer
      ICRP International Conference on Recovery after Nuclear Accidents : Radiological Protection Lessons from Fukushima and Beyond.
    • Int'l Joint Research
  • [Presentation] IDENTIFICATION OF THE TISSUE-SPECIFIC VITAMIN K BINDING PROTEIN BY USING MAGNETIC BEADS2020

    • Author(s)
      Masaharu Kobayashi, Ayako Furukawa, Maya Kamao, Yoshitomo Suhara, Yoshihisa Hirota
    • Organizer
      SEATUC2020
    • Int'l Joint Research
  • [Presentation] Enhancer genetics reveals physiological significance of expression rhythm of a single gene2020

    • Author(s)
      Shinpei Kawaoka
    • Organizer
      Society for Research on Biological Rhythms
    • Int'l Joint Research
  • [Presentation] High Precision Risk Assessment System with Large-Scale Control Experiments in the Mouse.2020

    • Author(s)
      Yoichi Gondo
    • Organizer
      The 2020 Annual Meeting of Environmental Mutagenesis and Genomics Society
    • Int'l Joint Research
  • [Presentation] Comprehensive detection of RNA targets that bind to chemical compounds using next-generation sequencing and data-driven method2020

    • Author(s)
      H. Fujimoto, Y. Kondoh, T. Kawamura, S. Hase, M. Imoto, H. Osada, Y. Sakakibara
    • Organizer
      The 25th Annual Meeting of the RNA Society (RNA2020)
    • Int'l Joint Research
  • [Presentation] Transcriptome Analysis on Fruit Size Control in ‘Totsutanenashi’ Persimmon2020

    • Author(s)
      Sheng Wang, Chun Lai Tam, Soichiro Nishiyama, Ryutaro Tao
    • Organizer
      The 3rd Asian Horticultural Congress 2020
    • Int'l Joint Research
  • [Presentation] Translatome profiling of methionine biosynthesis regulation in plants2020

    • Author(s)
      Naoyuki Sotta, Miku Fujita, Seidai Takamatsu, Hitoshi Onouchi, Yukako Chiba, Toru Fujiwara, Satoshi Naito and Yui Yamashita
    • Organizer
      TRANSLATIONAL CONTROL
    • Int'l Joint Research
  • [Presentation] Changes in fungal diversity in Ward Hunt Lake, Canadian High Arctic2020

    • Author(s)
      Tsuji M, Tanabe Y, WF Vincent, Uchida M
    • Organizer
      第11回極域科学シンポジウム
    • Int'l Joint Research
  • [Presentation] Single-cell analyses unravel unique features of plasma cell clones in POEMS syndrome2020

    • Author(s)
      Yusuke Isshiki, Naoya Mimura, Motohiko Oshima, Kensuke Kayamori, Masahide Seki, Yurie Nagai, Shokichi Tsukamoto, Yusuke Takeda, Chikako Ohwada, Sonoko Misawa, Junichiro Ikeda, Satoshi Kuwabara, Yutaka Suzuki, Emiko Sakaida, Chiaki Nakaseko, Atsushi Iwama
    • Organizer
      米国血液学会
    • Int'l Joint Research
  • [Presentation] Toward high-throughput antibody-antigen modeling2020

    • Author(s)
      Daron Standley
    • Organizer
      (The Basis for Computational Life Science 7)
    • Invited
  • [Presentation] データ駆動からキュリオシティ駆動生物学へ2020

    • Author(s)
      岩崎渉
    • Organizer
      2020年度日本数理生物学会年会
    • Invited
  • [Presentation] データサイエンティスト養成セッション : 実践的次世代シークエ ンス解析 : 微生物ゲノム解析2020

    • Author(s)
      谷澤靖洋
    • Organizer
      2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
    • Invited
  • [Presentation] データサイエンティスト養成セッション : 実践的次世代シークエ ンス解析 : 微生物データ解析 : 真核生物ゲノム解析2020

    • Author(s)
      坂本美佳
    • Organizer
      2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
    • Invited
  • [Presentation] Dynamic transcriptional regulation of neural stem cells by bHLH factors2020

    • Author(s)
      山田 真弓
    • Organizer
      第63回日本神経化学会大会
    • Invited
  • [Presentation] 古い記憶想起における海馬歯状回記憶痕跡細胞の関与2020

    • Author(s)
      奥野浩行
    • Organizer
      第63回日本神経化学会大会
    • Invited
  • [Presentation] レット症候群原因因子MeCP2のmiR-199aを介した神経幹細胞分化制御2020

    • Author(s)
      中嶋秀行、中島欽一
    • Organizer
      NPBPPP2020合同年会
    • Invited
  • [Presentation] Unique genome evolution of the Y-absent mammal in genus Tokudaia.2020

    • Author(s)
      Asato Kuroiwa
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
    • Invited
  • [Presentation] Towards the elucidation of the horn formation mechanism in the Japanese rhinoceros beetle using NGS analyses.2020

    • Author(s)
      Niimi, T. and Morita, S.
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
    • Invited
  • [Presentation] Body color changes and environmental adaptation in dragonflies.2020

    • Author(s)
      Futahashi Ryo
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
    • Invited
  • [Presentation] RNA binding proteins and 1ncRNAs in mitotic apparatus formation2020

    • Author(s)
      Daiju Kitagawa
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan (2020 Web)
    • Invited
  • [Presentation] The nutritional basis of symbiotic yeasts and bacteria for animal growth2020

    • Author(s)
      Yukako Hattori
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
    • Invited
  • [Presentation] Determination of the centriole duplication site through phase separation of critical factors2020

    • Author(s)
      Daiju Kitagawa
    • Organizer
      The 93rd Annual Meeting of the Japanese Biochemical Society (2020 Web)
    • Invited
  • [Presentation] つながる根 : 寄生植物と宿主植物のフシギな関係2020

    • Author(s)
      吉田聡子
    • Organizer
      日本植物学会第84回大会
    • Invited
  • [Presentation] がんの血管形成を制御するエピゲノムの特性2020

    • Author(s)
      田中美和
    • Organizer
      がん予防学術大会
    • Invited
  • [Presentation] 着床直前期におけるマウス胚位置取りの解析2020

    • Author(s)
      杉山真言
    • Organizer
      第163回日本獣医学会学術集会
    • Invited
  • [Presentation] シングルセル解析技術の進展2020

    • Author(s)
      鈴木穣
    • Organizer
      第19回日本再生医療学会総会
    • Invited
  • [Presentation] がんのシングルセルおよび空間トランスクリプトーム解析2020

    • Author(s)
      鈴木穣
    • Organizer
      第79回日本癌学会学術総会
    • Invited
  • [Presentation] Introduction to Single Cell Analysis2020

    • Author(s)
      Yutaka Suzuki
    • Organizer
      第84回日本循環器学会学術総会
    • Invited
  • [Presentation] 低線量生涯被ばくマウス解析の計画と進捗および検討事項2020

    • Author(s)
      権藤洋一
    • Organizer
      放射線の利用と生体影響第195委員会第1分科会第1回研究会
    • Invited
  • [Presentation] 20世紀から見えていた変異いま見える変異いまだ見えない変異2020

    • Author(s)
      権藤洋一
    • Organizer
      日本遺伝学会第92回大会ワークショップ
    • Invited
  • [Presentation] 低線量放射線生涯被ばくの次世代への影響2020

    • Author(s)
      権藤洋一
    • Organizer
      放射線の利用と生体影響第195委員会会議
    • Invited
  • [Presentation] 北極と南極に生育している菌類の産業利用を目指して2020

    • Author(s)
      辻雅晴
    • Organizer
      極限環境生物学会第21回年会・シンポジウム
    • Invited
  • [Presentation] モデル寄生植物の解析からみる植物間相互作用2020

    • Author(s)
      吉田聡子
    • Organizer
      植物科学シンポジウム2020
    • Invited
  • [Presentation] マイクロフォーカスX線CT法によるカブトムシの角形態の観察と計測.2020

    • Author(s)
      森田慎一、加藤輝、前野哲輝、新美輝幸
    • Organizer
      第14回 NIBB Bioimaging Forum「非光学的モダリティによる生物イメージングの新展開」
    • Invited
  • [Presentation] マイクロフォーカスX線CT法によるカブトムシの角形態の観察と計測2020

    • Author(s)
      森田慎一、加藤輝、前野哲輝、新美輝幸
    • Organizer
      第14回 NIBB Bioimaging Forum 「非光学的モダリティによる生物イメージングの新展開」
    • Invited
  • [Presentation] イモリ型の皮膚再生 : 皮膚の線維性瘢痕は再生に転ずるか? Newtic skin regeneration : Does fibrotic scarring in the skin transit to regeneration?2020

    • Author(s)
      千葉親文
    • Organizer
      第19回日本再生医療学会総会
    • Invited
  • [Presentation] がん幹細胞を標的とした治療戦略2020

    • Author(s)
      後藤典子
    • Organizer
      第24回日本がん分子標的治療学会学術集会
    • Invited
  • [Presentation] 自然免疫NF-кB活性化を調節する新規cGMP経路2020

    • Author(s)
      倉田祥一朗
    • Organizer
      第31回日本生体防御学会学術総会 シンポジウム
    • Invited
  • [Presentation] ビッグデータが出た後にどうするか : 「解釈」のための二次元オーミクス解析2020

    • Author(s)
      岩崎渉
    • Organizer
      第3回環境DNA学会・第36回個体群生態学会合同大会
    • Invited
  • [Presentation] ゲノム高次構造制御の破綻による中枢神経回路形成障害2020

    • Author(s)
      藤田幸、山下俊英
    • Organizer
      第43回日本神経科学大会
    • Invited
  • [Presentation] The mechanism of mating type determination in heterothallic strains of Closterium peracerosum-strigosum-littorale complex, a new model organism to study sexual reproduction in streptophytes2020

    • Author(s)
      Hiroyuki Sekimoto, Natsumi Tsuyuki, Ayumi Komiya, Tomoaki Nishiyama
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] Cell-cell interaction between parasitic plants and host plants2020

    • Author(s)
      吉田聡子
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] Understanding of molecular mechanisms underlying on morphological diversity of goldfish (Carassius auratus) strains2020

    • Author(s)
      今鉄男、大森義裕
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] Epigenetic approach to Alzheimer's disease2020

    • Author(s)
      間野 達雄、岩田 淳
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] Immune regulation by translation-dependent mRNA decay2020

    • Author(s)
      Takeuchi, O
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] レット症候群原因因子MeCP2のmiR-199aを介した神経幹細胞分化制御2020

    • Author(s)
      中嶋秀行、辻村啓太、中島欽一
    • Organizer
      第43回日本分子生物学会年会
    • Invited
  • [Presentation] レット症候群原因因子MeCP2のマイクロRNAを介した神経幹細胞分化制御機構の解明2020

    • Author(s)
      中島欽一
    • Organizer
      第47回日本毒性学会学術年会
    • Invited
  • [Presentation] イモリを真似る : 人のbody-parts完全再生に向けた研究戦略2020

    • Author(s)
      千葉親文
    • Organizer
      第50回日本創傷治癒学会 教育講演
    • Invited
  • [Presentation] 骨格筋の重力/無重力応答に関する研究2020

    • Author(s)
      佐藤文規、瀬原淳子
    • Organizer
      第59回日本生体医工学会大会 シンポジウム「宇宙に生き、地上で活かす」(オンライン)
    • Invited
  • [Presentation] 脳の発達を支える新たなメカニズム-MeCP2によるヘテロクロマチン制御-2020

    • Author(s)
      石田 綾
    • Organizer
      第71回日本薬理学会北部会、次世代薬理学セミナー
    • Invited
  • [Presentation] 相分離による中心小体複製起点の決定2020

    • Author(s)
      北川大樹
    • Organizer
      第72回日本細胞生物学会大会 (2020 Web)
    • Invited
  • [Presentation] Modeling sarcoma to clarify enhancer reprogramming in disease progression2020

    • Author(s)
      田中美和
    • Organizer
      第79回日本癌学会学術総会
    • Invited
  • [Presentation] miRNA Methylation2020

    • Author(s)
      Ishii, H.
    • Organizer
      第79回日本癌学会学術総会
    • Invited
  • [Presentation] Identification of subpopulations in patients-derived breast cancer stem-like cells by using RNA sequencing2020

    • Author(s)
      西村建徳
    • Organizer
      第79回日本癌学会学術総会
    • Invited
  • [Presentation] テントウムシの斑紋とカブトムシの角について.2020

    • Author(s)
      新美輝幸
    • Organizer
      第7回コオロギ・オンライン研究会
    • Invited
  • [Presentation] エンハンサー遺伝学とマルチオミクス解析による生命現象の理解2020

    • Author(s)
      河岡慎平
    • Organizer
      第93回日本生化学会大会
    • Invited
  • [Presentation] ヒト精子におけるエピゲノムプロフィールの検討2020

    • Author(s)
      岡田由紀、牧野吉倫
    • Organizer
      第93回日本生化学会大会
    • Invited
  • [Presentation] MRSAの病原性制御機構2020

    • Author(s)
      垣内力
    • Organizer
      第94回日本感染症学会総会
    • Invited
  • [Presentation] 微生物進化の予測と制御へ向けて2020

    • Author(s)
      古澤 力
    • Organizer
      第94回日本細菌学会総会
    • Invited
  • [Presentation] セントロメアのエピジエネティックスと進化2020

    • Author(s)
      堀哲也
    • Organizer
      日本遺伝学会第92回大会
    • Invited
  • [Presentation] Y染色体とSRY遺伝子をもたない哺乳類種の性決定メカニズム2020

    • Author(s)
      黒岩麻里
    • Organizer
      日本遺伝学会第92回大会
    • Invited
  • [Presentation] 宿主由来シグナルによって制御される寄生植物の器官発生2020

    • Author(s)
      吉田聡子
    • Organizer
      日本植物学会第84回大会
    • Invited
  • [Presentation] 相分離により形成される核小体とAS2ボディの葉形成における役割2020

    • Author(s)
      町田千代子、鈴木崇紀、町田泰則
    • Organizer
      日本植物学会第84回大会
    • Invited
  • [Presentation] 表現型揺らぎと進化可能性 : 微生物進化実験によるアプローチ2020

    • Author(s)
      古澤 力
    • Organizer
      日本植物学会第84回大会
    • Invited
  • [Presentation] 進化過程の予測と制御へ向けて : 大規模大腸菌進化実験の表現型・遺伝子型解析2020

    • Author(s)
      古澤 力
    • Organizer
      日本進化学会第22回オンライン大会
    • Invited
  • [Presentation] 様々な微生物間におけるプラスミドの伝播現象に影響を及ぼす因子の探索2020

    • Author(s)
      新谷政己
    • Organizer
      日本進化学会第22回オンライン大会
    • Invited
  • [Presentation] 創傷がトリガーする器官再生に固有な現象とその機構2020

    • Author(s)
      深澤 太郎
    • Organizer
      日本動物学会第91回大会シンポジウム テクノロジーが切り開く「シン・再生研究」
    • Invited
  • [Presentation] クロマチンダイナミクスの解析から再生特異的なエンハンサーの活性化メカニズムに迫る2020

    • Author(s)
      鈴木菜花、荻野肇、越智陽城
    • Organizer
      日本動物学会第91回大会シンポジウム テクノロジーが切り開く「シン・再生研究」
    • Invited
  • [Presentation] RNA代謝による自然免疫応答の惹起と制御2020

    • Author(s)
      竹内理
    • Organizer
      日本臨床免疫学会総会
    • Invited
  • [Presentation] Discovery of mRNA secondary structural features for the accurate prediction of protein abundance in Escherichia coli2020

    • Author(s)
      Goro Terai, Kiyoshi Asai
    • Organizer
      2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
  • [Presentation] PBSIM2 : simulator for long read sequencers with a novel generative model of quality scores2020

    • Author(s)
      Yukiteru Ono, Kiyoshi Asai, Michiaki Hamada
    • Organizer
      2020年日本バイオインフォマティクス学会年会・第9回生命医薬情報学連合大会(IIBMP2020)
  • [Presentation] Simultaneous measurement of RNA synthesis and degradation rates using modified ribonucleosides2020

    • Author(s)
      Kentaro Kawata
    • Organizer
      2nd RNAJ Online Meeting
  • [Presentation] Medusavirus transcriptome & the genome characterization of a new medusavirus strain2020

    • Author(s)
      Zhang R., Yoshida K., Garcia K., Endo H., Takemura M., Ogata H.
    • Organizer
      JSME Environmental Virus Meeting 2020
  • [Presentation] Shuffling Giants : Genome recombination between giant viruses isolated in Japan2020

    • Author(s)
      Garcia K., Yoshida K., Aoki K., Endo H., Takemura M., Ogata H.
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • [Presentation] Metagenome informatics for microbiome researches2020

    • Author(s)
      Mori H.
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • [Presentation] Development of a system for simultaneous measurement of RNA synthesis and degradation rates using modified nucleic acids2020

    • Author(s)
      Kentaro Kawata
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan
  • [Presentation] The nutritional basis of Drosophila associated yeasts and bacteria for larval growth2020

    • Author(s)
      Ayumi Mure
    • Organizer
      The 43rd Annual Meeting of the Molecular Biology Society of Japan (MBSJ2020 Online)
  • [Presentation] 網羅的遺伝子解析によって明らかになった神経線維腫症2型(NF2)の多様な臨床的・遺伝的背景2020

    • Author(s)
      寺西裕、宮脇哲、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
    • Organizer
      遺伝性腫瘍学会学術集会
  • [Presentation] 空間的/シングルセル遺伝子発現情報統合解析が示す心臓内神経堤細胞の多様性と領域性2020

    • Author(s)
      Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya, Mayuko Kida, Hiroki Higashiyama, Kazuhiro Matsui, Akashi Taguchi, Shogo Yamamoto, Shiro Fukuda, Seitaro Nomura, Takahide Kohro, Chisa Shukunami, Masahide Seki, Yutaka Suzuki, Youichiro Wada, Hiroyuki Aburatani, Yukiko Kurihara, Sachiko Miyagawa-Tomita, Hiroki Kurihara
    • Organizer
      第19回日本心臓血管発生研究会
  • [Presentation] Regionality of intracardiac neural crest cells with diversity and differentiation fate mechanism revealed by single cell and spatial transcriptome analysis2020

    • Author(s)
      Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya, Mayuko Kida, Hiroki Higashiyama, Kazuhiro Matsui, Akashi Taguchi, Shogo Yamamoto, Shiro Fukuda, Seitaro Nomura, Takahide Kohro, Chisa Shukunami, Masahide Seki, Yutaka Suzuki, Youichiro Wada, Hiroyuki Aburatani, Yukiko Kurihara, Sachiko Miyagawa-Tomita, Hiroki Kurihara
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] がんゲノム情報を用いた食道癌治療の最適化2020

    • Author(s)
      岩谷 岳、遠藤 史隆、八重樫 瑞典、佐々木 教之、藤澤 良介、二階 春香、馬場 誠朗、秋山 有史、佐々木 章、西塚 哲
    • Organizer
      第120回日本外科学会定期学術集会
  • [Presentation] オオムギ2H染色体に座乗する形質転換効率に関わるTFA3遺伝子座の機能2020

    • Author(s)
      久野 裕、宗森 広美、佐藤 和広
    • Organizer
      第15回ムギ類研究会
  • [Presentation] 複数組織DNAに対するtarget deep sequenceによって明らかになった神経線維腫症2型(NF2)の多様な臨床的・遺伝的背景2020

    • Author(s)
      寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
    • Organizer
      第29回日本聴神経腫瘍研究会
  • [Presentation] MeCP2 Levels Regulate Heterochromatin Structure in vivo2020

    • Author(s)
      Aya Ito-Ishida
    • Organizer
      第43回日本神経科学大会
  • [Presentation] 粒子曝露による多動性障害ラット線条体のDNAメチル化プロファイル2020

    • Author(s)
      石堂正美
    • Organizer
      第43回日本神経科学大会
  • [Presentation] 哺乳類ゲノムに内在化するウイルスに由来する配列2020

    • Author(s)
      中川草
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] シングルセル解析で見えてきたiPS細胞由来Ⅰ型肺胞上皮細胞2020

    • Author(s)
      後藤 慎平
    • Organizer
      第60回日本呼吸器学会学術講演会
  • [Presentation] 原発巣変異およびctDNA治療後早期変動による食道癌化学療法効果予測2020

    • Author(s)
      岩谷 岳、遠藤 史隆、藤澤 良介、佐々木 教之、二階 春香、馬場 誠朗、秋山 有史、佐々木 章、西塚 哲
    • Organizer
      第74回日本食道学会学術集会
  • [Presentation] Development of high-precision comprehensive detection of de novo mutations in the mouse.2020

    • Author(s)
      Yoichi Gondo
    • Organizer
      第43回日本分子生物学会年会(MBSJ2020)
  • [Presentation] 九倍体カキ’平核無’とその枝変わり群の系統分化2020

    • Author(s)
      西山総一郎、王 盛、田尾龍太郎
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] 全ゲノムデータからみたヒメミカヅキモの自殖系統におけるホメオログ間組み換え2020

    • Author(s)
      川口也和子、土金勇樹、田中啓介、太治輝昭、豊田敦、西山智明、関本弘之、土松隆志
    • Organizer
      日本植物学会第84回大会
  • [Presentation] ゲノム量から明らかにするヒメミカヅキモの多様性2020

    • Author(s)
      土金勇樹、川口也和子、上原浩一、土松隆志
    • Organizer
      日本植物学会第84回大会
  • [Presentation] Analysis of gap regions in 22q11 by using long read sequencing technology2020

    • Author(s)
      Hidehito Inagaki, Takema Kato, Atsushi Toyoda, Yoshio Makita, Hiroki Kurahashi
    • Organizer
      日本人類遺伝学会第65回大会
  • [Presentation] 頭蓋内動脈狭窄におけるRNF213変異の解析2020

    • Author(s)
      本郷博貴、宮脇哲、今井英明、清水暢裕、寺西裕、堂福翔吾、小原健太、石神大一郎、小野秀明、中冨浩文、斉藤延人
    • Organizer
      日本人類遺伝学会第65回大会
  • [Presentation] RNA polymerase IIリン酸化による転写一時停止はエピジェネティクス情報不均一さを抑制する2020

    • Author(s)
      梶谷卓也
    • Organizer
      日本生化学会北陸支部例会
  • [Presentation] 神経線維腫症2型(NF2)の遺伝子解析によって明らかになった多様な臨床的・遺伝的背景2020

    • Author(s)
      寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
    • Organizer
      日本脳神経外科学会総会
  • [Presentation] 分裂酵母新規RNA結合タンパク質の紡錘体形成における機能解析2020

    • Author(s)
      湯川格史
    • Organizer
      酵母遺伝学フォーラム第53回研究報告会
  • [Presentation] 非B非C肝細胞癌の背景肝疾患別臨床的及び分子生物学的特徴の検討2020

    • Author(s)
      村井 大毅、小玉 尚宏、竹原 徹郎
    • Organizer
      第106回日本消化器病学会総会
  • [Presentation] マウス胎子期精巣における新規性転換系の樹立とその卵巣化メカニズムの解析2020

    • Author(s)
      今井松健也、板橋寛嗣、冨田絢子、平松竜司、金井克晃
    • Organizer
      第113回日本繁殖生物学会大会
  • [Presentation] ダイズにおける*ddml*変異体の遺伝分析2020

    • Author(s)
      白石 佳那、高橋 一輝、丸小 知歩、黒田 隆太、加賀 秋人、岡崎 桂一、深井 英吾
    • Organizer
      第15回東北育種研究集会
  • [Presentation] マウス胎子期精巣の性転換系における卵巣化メカニズムの解析2020

    • Author(s)
      今井松健也、板橋寛嗣、冨田絢子、平松竜司、金井克晃
    • Organizer
      第163回日本獣医学会学術集会
  • [Presentation] ショウジョウバエ成虫原基を用いた器官運命転換の瞬間における遺伝子発現制御の網羅的解析2020

    • Author(s)
      横井智大、根本和也、増子恵太、布施直之、倉田祥一朗
    • Organizer
      第19回次世代を担う若手ファーマ・バイオフォーラム2020
  • [Presentation] ミヤコグサのベツリン酸生合成を制御するbHLH型転写因子の同定2020

    • Author(s)
      鈴木隼人、髙橋宏和、福島エリオデット、關 光、中園幹生、村中俊哉
    • Organizer
      第30回イソプレノイド研究会
  • [Presentation] クロテンフユシャクの季節性関連遺伝子 : ゲノムワイド関連解析によるアプローチ2020

    • Author(s)
      山本哲史、工藤誠也、佐藤臨、池田紘士、藤澤知親、野村翔太、曽田貞滋
    • Organizer
      第3回環境DNA学会・第36回個体群生態学会合同大会
  • [Presentation] 皮質下投射ニューロンへの分化リプログラミング時における転写制御機構2020

    • Author(s)
      大石康二、仲嶋一範
    • Organizer
      第43回日本神経科学大会
  • [Presentation] 大脳新皮質第4層ニューロンのサブタイプ特異的分化に寄与する細胞外シグナルの解析2020

    • Author(s)
      長谷川紘之、大石康二、山本亘彦、仲嶋一範
    • Organizer
      第43回日本神経科学大会
  • [Presentation] Role of cohesin loader in experience-dependent development of interneuron in juvenile brain2020

    • Author(s)
      Sakai, A., Nakato, R., Peters. H., Shirahige, K., Sugiyama, S.
    • Organizer
      第43回日本神経科学大会
  • [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNAの同定2020

    • Author(s)
      北嶋洋志、丸山玲緒、高澤 啓、新沼 猛、山本英一郎、甲斐正広、時野隆至、小山内誠、仲瀬裕志、鈴木 拓
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] 長いエクソンは天然変性領域をコードしており、SRSF3により安定的にスプライスされる2020

    • Author(s)
      増田章男、河地利彦、大野欽司
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Discovery of novel RNA clouds in ER-positive breast cancer cells2020

    • Author(s)
      市川 雄一、斉藤 典子
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] 東アフリカ産シクリッドの唇肥大化に関わる平行進化の遺伝的機構2020

    • Author(s)
      二階堂雅人
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Evolutional diversity of CENP-A essential motif and its binding mode to HJURP2020

    • Author(s)
      Tetsuya Hori, Jinghui Cao, Yasuhiro Arimura, Kohei Nishimura, Mariko Ariyoshi, Atsushi Toyoda, Sadahiko Misu, Kazuho Ikeo, Hitoshi Kurumizaka, Tatsuo Fukagawa
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Biochemical analysis of interaction between CENP-A/H4 and HJURP2020

    • Author(s)
      Jinghui Cao, Yasuhiro Arimura, Mariko Ariyoshi, Hitoshi Kurumizaka, Tetsuya Hori, Tatsuo Fukagawa
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Bulk poly(A)+RNA輸送受容体NXF1補因子NXT遺伝子の哺乳類における多様化とその分子機能2020

    • Author(s)
      吉岡英恵、猪瀬春子、藤田賢一、増田誠司
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Genome-based study of innate immune memory in Drosophila2020

    • Author(s)
      Chang Tang, Chisaki Okamori, Kikuko Hirai, Shoichiro Kurata, Naoyuki Fuse
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Transcriptome analysis at the initial state of transdetermination in Drosophila imaginal discs2020

    • Author(s)
      横井 智大、布施 直之、根本 和也、増子 恵太、倉田 祥一朗
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Sperm epigenomics for quantitative analyses of their heterogeneity2020

    • Author(s)
      岡田由紀、牧野吉倫
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Autocrine LIF signaling promotes the progression of human esophageal squamous cell carcinoma2020

    • Author(s)
      谷口 浩二、川副 徹郎
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] シロイヌナズナの葉の向背軸分化におけるエピジェネティック因子AS2 と核小体タンパク質の役割2020

    • Author(s)
      町田千代子、岩川秀和、高橋広夫、安藤沙友里、日比野哲紀、坂本卓也、坂本勇貴、松永幸大、野元美佳、多田正臣、小島晶子、町田泰則
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] CDK9阻害剤のスプライシング調節メカニズムの解析2020

    • Author(s)
      米田 宏
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] 幼若脳の経験依存的な抑制性介在ニューロン発達におけるコヒーシンローダーの役割2020

    • Author(s)
      酒井 晶子、中戸 隆一郎、Heiko Peters、白髭 克彦、杉山 清佳
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] 大腸菌のタンパク質発現量予測のためのRNA2次構造特徴の抽出2020

    • Author(s)
      寺井悟朗、浅井潔
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] Molecular characterization of aging choroid plexus that regulates neural stem cell's behavior and brain functions2020

    • Author(s)
      堅田明子
    • Organizer
      第43回日本分子生物学会年会
  • [Presentation] もやもや病関連RNF213バリアントの網羅的解析2020

    • Author(s)
      本郷博貴、宮脇哲、今井英明、清水暢裕、寺西裕、堂福翔吾、小原健太、小野秀明、中冨浩文、斉藤延人
    • Organizer
      第45回日本脳卒中学会学術集会
  • [Presentation] 非B非C肝細胞癌の臨床的及び分子生物学的特徴と予後に関する検討2020

    • Author(s)
      村井 大毅、小玉 尚宏、竹原 徹郎
    • Organizer
      第56回日本肝癌研究会
  • [Presentation] Aspergillus fumigatusのアゾール耐性に関わる新規因子について2020

    • Author(s)
      新居鉄平, 高橋弘喜, 楠屋陽子, 渡辺哲, 亀井克彦
    • Organizer
      第64回日本医真菌学会総会
  • [Presentation] Transient activation of super-enhancers and transcription of cellular genes induced by HTLV-1 Tax2020

    • Author(s)
      栗田大輔、安永純一朗、田中梓、松岡雅雄
    • Organizer
      第79回日本癌学会学術集会
  • [Presentation] DDX41の機能抑制は翻訳変化とDNAダメージを誘導する2020

    • Author(s)
      神力 悟、トンガラグ・サロール、平山 真弓、金井 昭教、長町 安希子、稲葉 俊哉、松井 啓隆
    • Organizer
      第79回日本癌学会学術総会
  • [Presentation] 慢性胃炎および胃がんに関連する長鎖non-coding RNAの同定2020

    • Author(s)
      北嶋洋志、丸山玲緒、高澤 啓、新沼 猛、山本英一郎、甲斐正広、時野隆至、小山内誠、仲瀬裕志、鈴木 拓
    • Organizer
      第79回日本癌学会学術総会
  • [Presentation] The SFK-YAP axis can be a new potential therapeutic target in colorectal cancer2020

    • Author(s)
      谷口 浩二
    • Organizer
      第79回日本癌学会学術総会
  • [Presentation] Development of novel treatment for esophageal squamous cell carcinoma targeting inflammatory transduction pathway2020

    • Author(s)
      川副 徹郎、沖 英次、森 正樹、谷口 浩二
    • Organizer
      第79回日本癌学会学術総会
  • [Presentation] Single cell analysis revealed heterogeneity among patient-derived breast cancer stem-like cells2020

    • Author(s)
      Mengjiao Li
    • Organizer
      第79回日本癌学会学術総会
  • [Presentation] Translational regulation of a subset of genes by DDX412020

    • Author(s)
      Tungalag Saruul, Satoru Shinriki, Miyu Tanaka, Mayumi Hirayama, Akiko Nagamachi, Akinori Kanai, Toshiya Inaba, Hirotaka Matsui
    • Organizer
      第82回日本血液学会学術集会
  • [Presentation] RUNX/CBF β-driven Irf8 enhancer decides the lineage choice between monocytes and dendritic cells.2020

    • Author(s)
      Koichi Murakami, Haruka Sasaki, Akira Nishiyama, Wataru Kawase, Daisuke Kurotaki, Jun Nakabayashi, Yoichi Sekita, Hideaki Nakajima, Keiko Ozato, Toru Kimura, Tomohiko Tamura
    • Organizer
      第82回日本血液学会学術集会
  • [Presentation] 樹状細胞分化におけるクロマチン高次構造動態解析2020

    • Author(s)
      黒滝大翼、Pedro P. Rocha、Kairong Cui、中林潤、佐伯恵太、Keji Zhao、Keiko Ozato、田村智彦
    • Organizer
      第82回日本血液学会学術集会
  • [Presentation] Intestinal microbiota in heart failure2020

    • Author(s)
      Tomoya Yamashita, Tokiko Tabata, Takuo Emoto, Tomohiro Hayashi, Hikaru Watanabe, Tomoya Takahashi, Naofumi Yoshida, Yoshihiro Saito, Takuji Yamada, Ken-ichi Hirata
    • Organizer
      第84回日本循環器学会学術集会
  • [Presentation] Gut microbiota and their related metabolites in heart failure as novel therapeutic targets2020

    • Author(s)
      Tokiko Tabata, Tomoya Yamashita, Ken-ichi Hirata
    • Organizer
      第84回日本循環器学会学術集会
  • [Presentation] 発熱植物ザゼンソウにおけるSBP1遺伝子の発現に関する研究2020

    • Author(s)
      谷本 悠、梅川 結、伊藤 菊一
    • Organizer
      第93回日本生化学会大会
  • [Presentation] 神経線維腫症2型(NF2)の遺伝子解析によって明らかになった多様な臨床的・遺伝的背景2020

    • Author(s)
      寺西裕、宮脇哲、石神大一郎、小原健太、本郷博貴、堂福翔吾、高柳俊作、中冨浩文、齊藤延人
    • Organizer
      日本脳腫瘍の外科学会
  • [Presentation] 全ゲノム解析によるヴィクトリア湖産シクリッドにおける種特有の適応パターンの解明2020

    • Author(s)
      中村遥奈、相原光人、豊田敦、伊藤武彦、二階堂雅人
    • Organizer
      日本遺伝学会第92回大会
  • [Presentation] De novo生殖系列変異の特徴と後世代影響2020

    • Author(s)
      内村有邦、佐藤康成、樋口真弓、水口洋平、豊田敦、八木健
    • Organizer
      日本遺伝学会第92回大会
  • [Presentation] ロングリードシーケンスを用いたイネ染色体添加系統におけるゲノム構造変異解析2020

    • Author(s)
      保坂 碧、真弓 彩夏、安井 秀、野々村 賢一、辻 寛之
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] ホウレンソウ育種の効率化に向けた Pseudomoleculeの構築2020

    • Author(s)
      平川 英樹、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、杉山 優、小野寺 康之
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] 新規ホウレンソウ pseudomolecule を用いた重要育種形質のQTL解析2020

    • Author(s)
      小野寺 康之、杉山 優、豊田 敦、伊藤 武彦、鈴木 穣、永野 惇、平川 英樹
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] Ar・Feイオンビーム照射によって生じるクロレラ染色体の断片化と染色体再編成2020

    • Author(s)
      石井公太郎、風間裕介、浅野円花、阿部知子、河野重行
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] ホウレンソウ育種の効率化に向けたPseudomoleculeの構築2020

    • Author(s)
      平川英樹
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] 新規ホウレンソウpseudomoleculeを用いた重要育種形質のQTL解析2020

    • Author(s)
      小野寺康之
    • Organizer
      日本育種学会第138回講演会
  • [Presentation] マウス大脳新皮質錐体細胞との比較による海馬CA1錐体細胞の移動制御要因の解明2020

    • Author(s)
      北澤彩子、大石康二、吉永怜史、シンミンギョン、林周宏、久保健一郎、仲嶋一範
    • Organizer
      日本解剖学会第108回関東支部学術集会
  • [Presentation] Runx2は骨格発生においてクロマチンランドスケープを規定する2020

    • Author(s)
      北條宏徳、齋藤琢、小野寺晶子、東俊文、鄭雄一、大庭伸介
    • Organizer
      日本骨代謝学会学術集会
  • [Presentation] ヒメミカヅキモのPR-IPは、性フェロモンであるが有性生殖に必須ではない2020

    • Author(s)
      山口里帆子、福島早貴、今詩織、神田奈保、関本弘之
    • Organizer
      日本植物学会第84回大会
  • [Presentation] シロイヌナズナの葉の発生・分化におけるzinc-finger protein AS2によるエピジェネティック制御2020

    • Author(s)
      日比野哲紀、高橋広夫、鈴木雅貴、Vial-Pradel Simon、町田泰則、小島晶子、町田千代子
    • Organizer
      日本植物学会第84回大会
  • [Presentation] 重力屈性が野生型と逆になるヒメツリガネゴケ突然変異体gtr2の単離2020

    • Author(s)
      逵ローレンスかおる、小針寛乃、大塚沙穂子、日渡祐二
    • Organizer
      日本植物学会第84回大会
  • [Presentation] 日本犬の成立に寄与したニホンオオカミのゲノム領域2020

    • Author(s)
      寺井洋平、五條堀淳、本郷一美、松村秀一、石黒直隆
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] ヴィクトリア湖産シクリッドHaplochromis chilotesの全ゲノム配列解析による分集団における適応過程の解明2020

    • Author(s)
      中村遥奈、畑島諒、相原光人、豊田敦、伊藤武彦、二階堂雅人
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] ヴィクトリア湖固有シクリッド Haplochromis sp. “matumbi hunter”の遺伝的多様性2020

    • Author(s)
      今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] Population Genomic Analysis of Drosophila albomicans from Taiwan and Japan2020

    • Author(s)
      Sultan Lulecioglu
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] ヴィクトリア湖固有シクリッドHaplochromis sp. “matumbi hunter”の遺伝的多様性2020

    • Author(s)
      今本南、中村遥奈、相原光人、伊藤武彦、二階堂雅人
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] 環境中からの新規IncP-1群プラスミドの取得2020

    • Author(s)
      金子健成、中道孝一朗、森内良太、道羅英夫、金原和秀、新谷政己
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] 異なるIncPromA群プラスミドの全塩基配列比較2020

    • Author(s)
      山本雪絵、早川雅也、森内良太、道羅英夫、新谷政己、金原和秀
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] 薬剤耐性遺伝子の伝播に寄与するプラスミドの収集2020

    • Author(s)
      中道 孝一朗、金子 健成、森 光矢、森内 良太、道羅 英夫、金原 和秀、二又 裕之、新谷政己
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] 初冬型および晩冬型フユシャク類の生活史比較 : 平行種分化の謎に迫る2020

    • Author(s)
      山本哲史、工藤誠也、佐藤臨、池田紘士、藤澤知親、野村翔太、曽田貞滋
    • Organizer
      日本進化学会第22回オンライン大会
  • [Presentation] ツメガエル幼生尾再生に促進的に働く免疫細胞の同定2020

    • Author(s)
      出口 桃子、深澤 太郎、久保 健雄
    • Organizer
      日本動物学会第91回大会
  • [Presentation] シクリッドにおける唇肥大化の平行進化メカニズム2020

    • Author(s)
      畑島諒、豊田敦、梶谷嶺、伊藤武彦、二階堂雅人
    • Organizer
      日本動物学会第91回大会
  • [Presentation] 分裂酵母の新規RNA結合タンパク質Nrp1の機能解析2020

    • Author(s)
      湯川格史
    • Organizer
      日本農芸化学会2020年度大会
  • [Presentation] 骨格筋の抗重力について考える2020

    • Author(s)
      瀬原淳子
    • Organizer
      日本分子生物学会年会フォーラム「骨格筋細胞研究がリードする新しい健康科学の分子生物学新機軸」
  • [Presentation] DEAD-box RNA ヘリカーゼをコードするシロイヌナズナSMN2/HEN2はSMN1/RPS6による病害抵抗性に必須でありmekk1及びmpk4変異体の矮性を伴う防御反応表現型に関与する2020

    • Author(s)
      高木桃子、岩本直樹、久保佑太、森本貴行、高木宏樹、高橋史憲、西内巧、田中啓介、太治輝昭、上中弘典、篠崎一雄、秋光和也、寺内良平、白須賢、市村和也
    • Organizer
      令和2年度日本植物病理学会関西部会
  • [Book] ゲノム編集技術を応用した製品開発とその実用化 ~研究開発動向・課題解決策・技術予測と市場展望~2021

    • Author(s)
      小西裕之
    • Pages
      213-226
    • Total Pages
      602
    • Publisher
      (株)技術情報協会
  • [Book] 人間の本質にせまる科学-自然人類学の挑戦2021

    • Author(s)
      太田博樹
    • Pages
      123-138
    • Total Pages
      280
    • Publisher
      東京大学出版会
  • [Book] 遺伝子医学 35号 11巻1号2021

    • Author(s)
      鹿島幸恵、鈴木絢子、鈴木穣
    • Pages
      142-146
    • Total Pages
      176
    • Publisher
      株式会社 メディカルドゥ
  • [Book] ゲノム編集技術を応用した製品開発とその実用化2021

    • Author(s)
      権藤洋一
    • Pages
      327-338
    • Total Pages
      602
    • Publisher
      技術情報協会
  • [Book] 魚類の性決定・性分化・性転換 : これまでとこれから2021

    • Author(s)
      菊池潔
    • Pages
      33-74
    • Total Pages
      242
    • Publisher
      恒星社厚生閣
  • [Book] 実験医学別冊独習 Pythonバイオ情報解析2021

    • Author(s)
      先進ゲノム解析研究推進プラットフォーム(編)
    • Total Pages
      407
    • Publisher
      羊土社
  • [Book] 実験医学「マルチオミクスを使って得られた最新知見」2020

    • Author(s)
      北條広朗、水野林、河岡慎平
    • Pages
      1300-1305
    • Total Pages
      139
    • Publisher
      羊土社
  • [Book] 実験医学「新規の創薬モダリティ細胞医薬」2020

    • Author(s)
      小西理予、河岡慎平
    • Pages
      100-106
    • Total Pages
      243
    • Publisher
      羊土社
  • [Book] 実験医学増刊 機械学習を生命科学に使う2020

    • Author(s)
      森宙史
    • Pages
      88-94
    • Total Pages
      238
    • Publisher
      羊土社
  • [Book] 実験医学 Vol.38 No.92020

    • Author(s)
      関真秀、鈴木絢子、岡実穂、鈴木穣
    • Pages
      1511-1522
    • Total Pages
      147
    • Publisher
      羊土社
  • [Book] 遺伝子医学 34号 10巻4号2020

    • Author(s)
      鈴木絢子、鹿島幸恵、関真秀、鈴木穣
    • Pages
      128-134
    • Total Pages
      176
    • Publisher
      株式会社 メディカルドゥ
  • [Book] カイコの科学2020

    • Author(s)
      藤原晴彦
    • Pages
      51-52
    • Total Pages
      224
    • Publisher
      朝倉書店
  • [Book] 生体の科学 71巻2号2020

    • Author(s)
      鈴木絢子、鹿島幸恵、関真秀、鈴木穣
    • Pages
      102-107
    • Total Pages
      184
    • Publisher
      医学書院
  • [Book] 昆虫と自然2020

    • Author(s)
      稲富桃子, Shin Dungsun, Lai Yi-Ting, 松本竜実, 松野健治
    • Pages
      23-26
    • Total Pages
      36
    • Publisher
      ニュー・サイエンス社
  • [Remarks] 領域ホームページ

    • URL

      https://www.genome-sci.jp/

  • [Remarks] アカハライモリ遺伝子配列情報のデータベース。今後ゲノム情報を加えていく予定である。

    • URL

      http://antler.is.utsunomiya-u.ac.jp/imori/

  • [Remarks] Spinach Genome DataBase (現在、当該論文の査読中のためパスワード制限を付けている)

    • URL

      http://spinach.kazusa.or.jp

  • [Remarks] ゼニゴケゲノムDB : MarpolBase。モデル植物である ゼニゴケゲノムの研究支援サイトとして、ゲノムブラウザ・解析ツール・遺伝子名称管理サイトを運用している。新規ゲノム配列の追加、発現量データベースの機能追加を行なった。

    • URL

      http://marchantia.info

  • [Remarks] 微生物アノテーションパイプラインDFAST。原核微生物のための自動アノテーションサービスを提供する。ゲノムの生物種名・クオ リティチェック機能の新規開発と、DDBJスパコンへのサービス移行を行なった。

    • URL

      https://dfast.ddbj.nig.ac.jp

  • [Remarks] SonicParanoid (高速オルソログ遺伝子解析ソフトウェア)

    • URL

      http://iwasakilab.k.u-tokyo.ac.jp/sonicparanoid/

  • [Remarks] ProkAtlas (微生物生息環境データベース)

    • URL

      https://msk33.github.io/prokatlas.html

  • [Remarks] CUT&RUN解析パイプライン

    • URL

      https://github.com/khigashi1987/CUTRUN_Nextflow

  • [Patent(Industrial Property Rights)] miR302核酸改変体2020

    • Inventor(s)
      石井秀始、今野雅允、小比賀聡、森正樹
    • Industrial Property Rights Holder
      大阪大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      PCT/JP2020/017659
    • Overseas
  • [Patent(Industrial Property Rights)] エピジェネティックスを標的とした新規医薬2020

    • Inventor(s)
      石井秀始、今野雅允、小関準、浅井歩、目黒寛司、赤井周司、川野泰彦、布村一人
    • Industrial Property Rights Holder
      大阪大学
    • Industrial Property Rights Type
      特許
    • Industrial Property Number
      PCT/JP2020/017607
    • Overseas

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Published: 2022-04-15  

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