2009 Fiscal Year Final Research Report
Highly Accurate Comparative Genome Mapping and Structural Genomics
| Project/Area Number |
17018031
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| Research Category |
Grant-in-Aid for Scientific Research on Priority Areas
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| Allocation Type | Single-year Grants |
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| Review Section |
Biological Sciences
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| Research Institution | National Institute of Informatics |
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Principal Investigator |
FUJIYAMA Asao National Institute of Informatics, 情報学プリンシプル研究系, 教授 (60142311)
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| Co-Investigator(Kenkyū-buntansha) |
KUROKI Yoko 理化学研究所, 基幹研究所, 研究員 (10344037)
TOYODA Atsushi 国立遺伝学研究所, 生物遺伝資源情報総合センター, 特任准教授 (10267495)
WATANABE Masakatsu 東京工業大学, 大学院・生命理工学研究科, 助教 (90323807)
NIKAIDOU Masato 東京工業大学, 大学院・生命理工学研究科, 助教 (70432010)
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| Project Period (FY) |
2005 – 2009
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| Keywords | ゲノム / 比較ゲノム / ゲノム情報 / 染色体 / ゲノムライブラリ |
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| Research Abstract |
In this research, we aimed to clarify the genomic events that could be important during the evolutionary processes toward development of human. One of the major discoveries of this project is that the identification of the importance of species specific amplification of repetitive sequences after the separation of human and chimpanzee about 5-milllion years ago. To do so, we carried out highly accurate structural analysis of chimpanzee chromosome22 and Y, and compared them with human genome.
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[Journal Article] The genomeof the moss Physomitrella patens reveals evolutionary insights into the conquest of land by plants2008
Author(s)
Stefan A. Rensing, Daniel Lang, Andreas D. Zimmer, Astrid Terry, Asaf Salamov, Harris Shapiro, Tomoaki Nishiyama, Pierre-Francois Perroud, Erika Lindquist, Yasuko Kamisugi, Takako Tanahashi,, Keiko Sakakibara, Tomomichi Fujita, Kazuko Oishi, Tadasu Shin-I, Yoko Kuroki, Atsushi Toyoda, Yutaka Suzuki, Shin-ichi Hashimoto, Kazuo Yamaguchi,, Sumio Sugano, Yuji Kohara,, Asao Fujiyama, et al
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Journal Title
Peer Reviewed
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[Journal Article] The amphioxus genome and the evolution of the chordate karyotype2008
Author(s)
Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutierrez EL, Dubchak I, Garcia-Fernandez J, Gibson-Brown JJ, Grigoriev IV, Horton AC, de Jong PJ, Jurka J, Kapitonov VV, Kohara Y, Kuroki Y, Lindquist E, Lucas S, Osoegawa K, Pennacchio LA, Salamov AA, Satou Y, Sauka-Spengler T, Schmutz J, Shin-I T, Toyoda A, Bronner-Fraser M, Fujiyama A, Holland LZ, Holland PW, Satoh N, Rokhsar DS
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Journal Title
Nature 453
Pages: 1064-1071
Peer Reviewed
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[Journal Article] The medaka draft geome ad insightsinto vertebrate genome evolution2007
Author(s)
Masahiro Kasahara, Kiyoshi Naruse, Shin Sasaki, Yoichiro Nakatani, Wei Qu, Budrul Ahsan, Tomoyuki Yamada, Yukinobu Nagayasu, Koichiro Doi, Yasuhiro Kasai, Tomoko Jindo, Daisuke Kobayashi, Atsuko Shimada, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, iroyuki Takeda, Shinichi Morishita, Yuji Kohara
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Journal Title
Nature 447
Pages: 714-719
Peer Reviewed
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[Journal Article] Comparative analysis of chimpanzee and human Y chromosomes unveils complex evolutionary pathway2006
Author(s)
Yoko Kuroki, Atsushi Toyoda, Hideki Noguchi,, Todd D. Taylor, Takehiko Itoh, Dae-Soo Kim, Dae-Won Kim,, Sang-Haeng Choi, Il-Chul Kim, Han Ho Choi, Yong Sung Kim, Yoko Satta, Naruya Saitou, Tomoyuki Yamada, Shinichi Morishita, Masahira Hattori,, Yoshiyuki Sakaki, Hong-Seog Park, Asao Fujiyama
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Journal Title
NatureGenetics 38
Pages: 158-167
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