2009 Fiscal Year Final Research Report
Functional Genomics based upon mouse inter-subspecific consomic strain
Project/Area Number |
17018033
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Research Category |
Grant-in-Aid for Scientific Research on Priority Areas
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Allocation Type | Single-year Grants |
Review Section |
Biological Sciences
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Research Institution | National Institute of Genetics |
Principal Investigator |
SHIROISHI Toshihiko National Institute of Genetics, 系統生物研究センター, 教授 (90171058)
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Co-Investigator(Kenkyū-buntansha) |
KOIDE Tsuyoshi 国立遺伝学研究所, 系統生物研究センター, 准教授 (20221955)
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Co-Investigator(Renkei-kenkyūsha) |
TAKADA Toyoyuki 国立遺伝学研究所, 系統生物研究センター, 助教 (20356257)
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Project Period (FY) |
2005 – 2009
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Keywords | C57BL / 6 / MSM / Ms / コンソミック系統 / SNP / ゲノム多型性 / 表現型多様性 / QTL / サブコンソミック系統 |
Research Abstract |
Based upon large genomic and phenotypic differences between two mouse subspecies, we have developed an analytic platform for mouse functional genomics. Systematic phenotyping of a full set of mouse inter-subspecific consomic strains, in which each chromosome of a standard inbred strain C57BL/6J is replaced by its counter part of Japanese wild mice-derived MSM/Ms, successfully detected more than 200 QTLs that affect growth, metabolism, and behavioral complex traits. Beside, we have constructed genome and phenotype databases, integrating SNPs and the QTLs detected by the consomic strains. These databases are now open to public.
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Research Products
(69 results)
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[Journal Article] QTL analyses of temporal and intensity components of home-cage activity in KJR and C57BL/6J strains2009
Author(s)
Umemori, J., Nishi, A., Lionikas, A., Sakaguchi, T., Kuriki, S., Blizard, D.A., Koide, T.
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Journal Title
Peer Reviewed
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[Journal Article] Mouse inter-subspecific consomic strains for genetic dissection of quantitative complex traits2008
Author(s)
Takada, T., Mita, A., Maeno, A., Sakai, T., Shitara, H., Kikkawa, Y., Moriwaki, K., Yonekawa, H., Shiroishi, T.
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Journal Title
Genome Res. 18
Pages: 500-508
Peer Reviewed
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[Journal Article] Systematic analysis of emotionality in consomic mouse strains established from C57BL/6J and wild-derived MSM/Ms2008
Author(s)
Takahashi, A., Nishi, A., Ishii, A., Shiroishi, T., Koide, T.
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Journal Title
Genes, Brain and Behavior 7
Pages: 849-858
Peer Reviewed
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[Journal Article] Association of morphine-induced antinociception with variations in the 5' flanking and 3' untranslated regions of theμopioid receptor gene in 10 inbred mouse strains. Pharmacogenet2008
Author(s)
Shigeta Y., Kasai S., Han W., Hata H., Nishi A., Takamatsu Y., Hagino Y., Yamamoto H., Koide T., Shiroishi T., Kasai K., Tsunashima K., Kato N., Ikeda K.
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Journal Title
Genomics 18
Pages: 927-936
Peer Reviewed
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[Journal Article] A new Gsdma3 mutation affecting anagen phase of first hair cycle.2007
Author(s)
Tanaka, S., Tamura, M., Aoki, A., Fujii, T., Komiyama, H., Sagai, T., Shiroishi, T.
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Journal Title
Biochem Biophys Res Commun 359
Pages: 902-907
Peer Reviewed
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[Journal Article] Members of a novel gene family, Gsdm, are expressed exclusively in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner.2007
Author(s)
Tamura M., Tanaka S., Fujii T., Aoki A., Komiyama H., Ezawa K., Sumiyama K., Sagai T., Shiroishi, T.
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Journal Title
Genomics 89
Pages: 618-629
Peer Reviewed
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[Journal Article] Disruption of Genetic Interaction Between Two Autosomal Regions and the X Chromosome Causes Reproductive Isolation Between Mouse Strains Derived From Different Subspecies2007
Author(s)
Oka, A., Aoto, T., Totsuka, Y., Takahashi, R., Ueda, M., Mita, M., Sakurai-Yamatani, N., Yamamoto, H., Kuriki, S., Takagi, N., et al.
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Journal Title
Genetics 175
Pages: 185-197
Peer Reviewed
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[Journal Article] A series of ENU-induced single-base substitutions in a long-range cis-element altering Sonic hedgehog expression in the developing mouse limb bud2007
Author(s)
Masuya, H., Sezutsu, H., Sakuraba, Y., Sagai, T., Hosoya, M., Kaneda, H., Miura, I., Kobayashi, K., Sumiyama, K., Shimizu, A., et al.
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Journal Title
Genomics 89
Pages: 207-214
Peer Reviewed
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[Presentation] Genetic dissection of age-associated phenotypes using intersubspecific consomic strains2009
Author(s)
Takada T., Mita A., Ebata T., Shin-I T., Toyoda A., Fujiyama A., Kohara Y., Obata Y., Moriwaki K., Yonekawa H., Shiroishi T.
Organizer
23th International Mammalian Genome Conference
Place of Presentation
Jolla, USA.
Year and Date
20091101-20091104
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[Presentation] Two wave intersubspecific introgression built up genome framework of the classical laboratory mouse strains.2008
Author(s)
Takada T., Ebata T., Shin-I., Narita T., Abe K., Sakaki Y., Toyoda A., Obata Y., Moriwaki K., Kohara Y., Shiroishi T.
Organizer
22th International Mammalian Genome Conference
Place of Presentation
Prague, Czech Republic
Year and Date
20081102-20081105
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[Presentation] Complex genetic architecture of social interaction and aggressive behavior clarified using consomic strains derived from MSM and C57BL/6.2008
Author(s)
Takahashi, A., Sugimoto, H., Kimura, S., Tomihara, K., Tsuchiya, T., Kakihara, S., Tanemura, M., Shiroishi, T., Koide, T.
Organizer
22nd International Mammalian Genome Conference
Place of Presentation
Prague
Year and Date
20081102-20081105
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[Presentation] Mouse inter-subspecific consomic strains uncovers additive and non-additive genetic effects on complex traits.2008
Author(s)
Takada, T., Mita, A., Maeno, A., Moriwaki, K., Yonekawa, H., Shiroishi, T.
Organizer
22th International Mammalian Genome Conference
Place of Presentation
Prague, Czech Republic
Year and Date
20081102-20081105
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[Presentation] Mouse inter-subspecific consomic strains for the study of energy metabolism-related traits2008
Author(s)
Takada, T., Mita, A., Moriwaki, K., Yonekawa, H., Shiroishi, T.
Organizer
CBI Annual Meeting 2008 International Symposium
Place of Presentation
Tokyo, Japan
Year and Date
20081022-20081024
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[Presentation] Whole genome shotgun sequencing of M.M. Molossinus-derived MSM/Ms and detection of vast amount of SNPs against C57BL/6.2007
Author(s)
akada, T., Ebata, T., Narita, T., Shin-I, T., Abe, K., Sakaki, Y., Toyoda, A., Sagai T., Mita, A., Moriwaki, K., Kohara, Y., Shiroishi, T.
Organizer
21th International Mammalian Genome Conference
Place of Presentation
Kyoto, Japan.
Year and Date
20071028-20071101
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[Presentation] QTL analysis of differences of activities in home-cage and open-field between KJR and B6 mouse strains.2007
Author(s)
Umemori, J., Nishi, A., Takahashi, A., Kawasaki, Y., Lionikas, A., Blizard, DA., Koide, T.
Organizer
The Complex Trait Consortium 6th Annual Meeting
Place of Presentation
Braunschweig, Germany.
Year and Date
20070526-20070529
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[Presentation] Systematic analysis of behavioral traits in a series of consomic mouse strains established from C57BL/6J and wild-derived MSM.2007
Author(s)
Koide, T., Ishii, A., Nishi, A., Shiroishi, T., Takahashi, A.
Organizer
The International Behavioural and Neural Genetics Society Annual Meeting
Place of Presentation
Doorwerth, The Netherlands.
Year and Date
20070521-20070525
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[Presentation] 多因子表現型の遺伝解析系としてのマウス亜種間コンソミック系統の樹立と応用2006
Author(s)
高田豊行, 三田晃彦, 前野哲輝, 岡彩子, 田村勝, 坂井隆浩, 設楽浩志, 吉川欣亮, 森脇和郎, 米川博通, 城石俊彦
Organizer
日本遺伝学会
Place of Presentation
つくば
Year and Date
20060925-20060927
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