• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2008 Fiscal Year Annual Research Report

還元系金属酵素の有機金属・クラスター化学

Research Project

Project/Area Number 18GS0207
Research InstitutionNagoya University

Principal Investigator

巽 和行  Nagoya University, 物質科学国際研究センター, 教授 (10155096)

Co-Investigator(Kenkyū-buntansha) 川口 博之  東京工業大学, 大学院・理工学研究科, 教授 (20262850)
吉澤 一成  九州大学, 先導物質化学研究所, 教授 (30273486)
Keywords金属硫黄クラスター / ヒドロゲナーゼ / ニトロゲナーゼ / 還元系金属酵素 / 小分子活性化 / アセチルCoA合成酵素 / COデヒドロゲナーゼ / 有機金属化学
Research Abstract

本研究の成果のうち、代表してアセチルCoA合成酵素(ACS)活性部位モデルの合成とモデルによる酵素反応の解析について以下に概要を述べる。
ACSは炭素固定サイクルの一端を担い、COデヒドロゲナーゼで生成したCOとコバラミン由来のメチル基を基質として、チオールであるCoAのアセチル化を触媒する。ACSの活性中心は[Fe_4S_4]クラスターとニッケル二核錯体からなり、CoAからアセチルCoAへの変換反応はニッケル二核錯体によって触媒されると考えられている。本研究では錯体化学の観点から、ACSの活性サイトに存在するニッケル二核部位に着目し、その構造を再現する錯体を合成して反応性を詳細に検討することによって、ACSの酵素機構に新たな示唆を与える重要な成果を得た。
ACS活性中心のニッケル二核部位にあるCys-Gly-Cys配列を模倣する[N_2S_2]配位子と適切なニッケル前駆体から合成したカチオン性Ni(II)-Ni(II)二核錯体は、メチル基およびチオラートと反応し、メチル/チオラート二核錯体を与えた。この錯体に室温でCOを作用させたところ、Ni-CH_3結合にCOが挿入してアセチル/チオラート二核錯体となり、さらにアセチル基とチオラート配位子が還元的に脱離してチオエステルとNi(II)-Ni(O)二核錯体が生成した。このNi(II)-Ni(O)錯体は、メチルコバラミンに類似したCo(III)メチル錯体およびチオラートと順次反応してメチル/チオラート二核錯体を再生した。この反応系は、アセチルCoA合成酵素の反応サイクルを再現している。つまり、ACSの酵素反応がNi(II)〓Ni(O)のサイクルを利用した有機金属反応として理解できることを、実験化学的に初めて証明するものである。これは、還元系金属酵素の機能と有機金属化学の接点を明らかにした重要な成果である。

  • Research Products

    (60 results)

All 2009 2008 Other

All Journal Article (28 results) (of which Peer Reviewed: 28 results) Presentation (31 results) Remarks (1 results)

  • [Journal Article] Structural Models for the Active Site of Acetyl-CoA Synthase: Synthesis of Dinuclear Nickel Complexes Having Thiolate, Isocyanide, and Thiourea on the Ni_p Site2009

    • Author(s)
      M. Ito, M. Kotera, Y. Song, T. Matsumoto, K. Tatsumi
    • Journal Title

      Inorg. Chem. 48

      Pages: 1250-1256

    • Peer Reviewed
  • [Journal Article] Synthesis and Reactions of Mono- and Dinuclear Ni(I) Thiolate Complexes2009

    • Author(s)
      M. Ito, T. Matsumoto, K. Tatsumi
    • Journal Title

      Inorg. Chem. 48

      Pages: 2215-2223

    • Peer Reviewed
  • [Journal Article] Cationic and Anionic Dinuclear Nickel Complexes [Ni(N_2S_2)Ni(dtc)]^n (n- -1, +1) Modeling the Active Site of Acetyl-CoA Synthase2009

    • Author(s)
      Y. Song, M. Ito, M. Kotera, T. Matsumoto, K. Tatsumi
    • Journal Title

      Chem. Lett. 38

      Pages: 184-185

    • Peer Reviewed
  • [Journal Article] A Dithiolate-Bridged (CN)_2(CO)Fe-Ni Complex Reproducing the IR Spectrum of [NiFe] Hy drogenase2009

    • Author(s)
      S. Tanino, Z. Li, Y. Ohki, K. Tatsumi
    • Journal Title

      Inorg. Chem. 48

      Pages: 2358-2360

    • Peer Reviewed
  • [Journal Article] Reductive Coupling of Six Carbon Monoxides by a Ditantalum Hydride Complex2009

    • Author(s)
      T. Watanabe, Y. Ishida, T. Matsuo, H. Kawaguchi
    • Journal Title

      J. Am. Chem. Soc. 131

      Pages: 3474-3475

    • Peer Reviewed
  • [Journal Article] Strategic Roles of Axial Histidines in Structure Formation and Redox Regulation of Tetraheme Cytochrome c_32009

    • Author(s)
      Y. Takayama, N. D. Werbeck, H. Komori, K. Morita, K. Ozawa, Y. Higuchi, H. Akutsu
    • Journal Title

      Biochemistry 47

      Pages: 9405-9415

    • Peer Reviewed
  • [Journal Article] Comparison of the Reactivity of Bis(μ-oxo)Cu^<II> Cun^<III> and Cu^<III> Cu^<III> Species to Methane2009

    • Author(s)
      Y. Shiota, K. Yoshizawa
    • Journal Title

      Inorg. Chem. 48

      Pages: 838-845

    • Peer Reviewed
  • [Journal Article] DFT Study on Chemical N_2 Fixation by Using a Cubane-Type RuIr_3S_4 Cluster: Energy Profile for Binding and Reduction of N_2 to Ammonia via Ru-N-NH_x (x=1-3) Intermediates with Unique Structures2008

    • Author(s)
      H. Tanaka, H. Mori, H. Seino, M. Hidai, Y. Mizobe, K. Yoshizawa
    • Journal Title

      J. Am. Chem. Soc. 130

      Pages: 9037-9047

    • Peer Reviewed
  • [Journal Article] Molybdenum Trisulfido-Chlorido Anion [MoClS_3]: A Versatile Precursor for Thiomolybdate Derivatives2008

    • Author(s)
      J. Ito, Y. Ohki, M. Iwata, K. Tatsumi
    • Journal Title

      Inorg. Chem. 47

      Pages: 3763-3771

    • Peer Reviewed
  • [Journal Article] Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydroeenase2008

    • Author(s)
      Y. Ohki, K. Yasumura, K. Kuge, S. Tanino, M. Ando, Z. Li, K. Tatsumi
    • Journal Title

      Proc. Natl. Acad. Sci. U. S. A. 105

      Pages: 7652-7657

    • Peer Reviewed
  • [Journal Article] Reactions at the Ru-S Bonds of Coordinatively Unsaturated Ruthenium Complexes Having Tethered 2, 6-Dimesitylphenyl Thiolate2008

    • Author(s)
      Y. Ohki, Y. Takikawa, H. Sadohara, C. Kesenheimer, B. Engendahl, E. Kapatsina, K. Tatsumi
    • Journal Title

      Chem. Asian J. 3

      Pages: 1625-1635

    • Peer Reviewed
  • [Journal Article] Heterolytic Cleavage of Dihydrogen by Frustrated Lewis Pairs Derived from α-(Dimesitylph ospino)ferrocenes and B(C_6F_5)_32008

    • Author(s)
      D. P. Huber, G. Kehr, K. Bergander, R. Frolich, G. Erker, S. Tanino, Y. Ohki, K. Tatsumi
    • Journal Title

      Organometallics 27

      Pages: 5279-5284

    • Peer Reviewed
  • [Journal Article] Reversible Heterolysis of H_2 Mediated by an M-S(thiolate) Bond (M=Rh, Ir): A Mechanistic Implication for [NiFe] Hydroeenase2008

    • Author(s)
      Y. Ohki, M. Sakamoto, K. Tatsumi
    • Journal Title

      J. Am. Chem. Soc. 130

      Pages: 11610-11611

    • Peer Reviewed
  • [Journal Article] C-H Bond Activation of Heteroarenes Mediated by a Half-Sandwich Iron Complex of N-He terocyclic Carbene2008

    • Author(s)
      Y. Ohki, T. Hatanaka, K. Tatsumi
    • Journal Title

      J. Am. Chem. Soc. 130

      Pages: 17174-17186

    • Peer Reviewed
  • [Journal Article] Modulation of Third-Order Nonlinear Optical Properties by Backbone Modification of Poly meric Pillared-Layer Heterometallic Clusters2008

    • Author(s)
      C. Zhang, Y. Cao, J. Zhang, S. Meng, T. Matsumoto, Y. Song, J. Ma, Z. Chen, K. Tatsumi, M. G. Humphrey
    • Journal Title

      Adv. Mater. 20

      Pages: 1970-1875

    • Peer Reviewed
  • [Journal Article] Metalation of Expanded Porphyrins: A Chemical Trigger Used To Produce Molecular Twisting and Mobius Aromaticity2008

    • Author(s)
      Y. Tanaka, S. Saito, S. Mori, N. Aratani, H. Shinokubo, N. Shibata, Y. Higuchi, Z. S. Yoon, K. S. Kim, S. B. Noh, J. K. Park, D. Kim, A. Osuka
    • Journal Title

      Angew. Chem. Int. Ed. 47

      Pages: 681-684

    • Peer Reviewed
  • [Journal Article] Hydrogen Bonds of DsrD Protein Revealed by Neutron Crystallography2008

    • Author(s)
      T. Chatake, Y. Higuchi, N. Mizuno, I. Tanaka, N. Niimura, Y. Morimoto
    • Journal Title

      J. Synchrotron Rad. 15

      Pages: 277-280

    • Peer Reviewed
  • [Journal Article] Crystallization and Preliminary X-ray Analysis of a Class II Release Factor RF3 from a Sulfate-reducing Bacterium2008

    • Author(s)
      K. Kihira, S. Numata, M. Kitamura, J. Kondo, S. Terawaki, Y. Shomura, H. Komori, N. Shibata, Y. Higuchi
    • Journal Title

      Acta crystallogr. F64

      Pages: 622-624

    • Peer Reviewed
  • [Journal Article] Crystallization and Preliminary X-ray Crystallographic Study of Flavoredoxin from Desulfovi brio vulgaris Miyazaki F2008

    • Author(s)
      Y. Ueda, N. Shibata, D. Takeuchi, M. Kitamura, Y. Higuchi
    • Journal Title

      Acta crystallogr. F64

      Pages: 851-853

    • Peer Reviewed
  • [Journal Article] pH-Dependent Isotope Exchange and Hydrogenation Catalysed by Water-soluble NiRu Complexes as Functional Models for [NiFe] hydrogenases2008

    • Author(s)
      B. Kure, T. Matsumoto, K. Ichikawa, S. Fukuzumi, Y. Higuchi, T. Yasi, S. Ogo
    • Journal Title

      Dalton Trans.

      Pages: 4747-4755

    • Peer Reviewed
  • [Journal Article] Orbital Views of the Electron Transport in Molecular Devices2008

    • Author(s)
      K. Yoshizawa, T. Tada, A. Staykov
    • Journal Title

      J. Am. Chem. Soc. 130

      Pages: 9406-9413

    • Peer Reviewed
  • [Journal Article] Theoretical Analysis of the Reaction Mechanism of Biotin Carboxylase2008

    • Author(s)
      Y. Ito, H. Kondo, Y. Shiota, K. Yoshizawa
    • Journal Title

      J. Chem. Theor. Comput. 4

      Pages: 366-374

    • Peer Reviewed
  • [Journal Article] Rutenium-Catalyzed Selective and Efficient Oxygenation of Hydrocarbons with Water as an Oxygen Source2008

    • Author(s)
      Y. Hirata, T. Kojima, Y. Mizutani, Y. Shiota, K. Yoshizawa, S. Fukuzumi
    • Journal Title

      Angew. Chem. Int. Ed 47

      Pages: 5772-5776

    • Peer Reviewed
  • [Journal Article] Mechanism and Kinetics of Cyanide Destruction by Ferrate2008

    • Author(s)
      T. Kamachi, T. Nakayama, K. Yoshizawa
    • Journal Title

      Bull. Chem. Soc. Jpn. 81

      Pages: 1212-1218

    • Peer Reviewed
  • [Journal Article] Theoretical Study of Long-Ranged Electron Transport in Molecular Junctions2008

    • Author(s)
      D. Nozaki, Y. Girard, K. Yoshizawa
    • Journal Title

      J. Phys. Chem. C. 112

      Pages: 17408-17415

    • Peer Reviewed
  • [Journal Article] Combined Experimental and Theoretical Approach to Understand the Reactivity of a Monon uclear Cu(II)-Hydroperoxo Complex in Oxgenation Reactions2008

    • Author(s)
      T. Kamachi, Y. -M. Lee, T. Nishimi, J. Cho, K. Yoshizawa, W. Nam
    • Journal Title

      J. Phys. Chem. A. 112

      Pages: 13102-13108

    • Peer Reviewed
  • [Journal Article] Quantum Chemical Approach to the Mechanism for the Biological Conversion of Tyrosine to Dopaquinone2008

    • Author(s)
      T. Inoue, Y. Shiota, K. Yoshizawa
    • Journal Title

      J. Am. Chem. Soc. 130

      Pages: 16890-16897

    • Peer Reviewed
  • [Journal Article] Theoretical Study of the Direct Synthesis of H_2O_2 on Pd and Pd/Au Surfaces2008

    • Author(s)
      A. Staykov, T. Kamachi, T. Ishihara, K. Yoshizawa
    • Journal Title

      J. Phys. Chem. C. 112

      Pages: 19501-19505

    • Peer Reviewed
  • [Presentation] ニトロゲナーゼおよびヒドロゲナーゼ活性部位の人工構築2009

    • Author(s)
      大木靖弘
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      船橋
    • Year and Date
      20090327-20090330
  • [Presentation] カルコゲン架橋複核錯体を利用した小分子活性化2009

    • Author(s)
      松本剛
    • Organizer
      日本化学会第89春季年会
    • Place of Presentation
      船橋
    • Year and Date
      20090327-20090330
  • [Presentation] 鉄錯体による芳香族C-H結合活性化反応の開発2009

    • Author(s)
      大木靖弘
    • Organizer
      第5回有機元素化学セミナー
    • Place of Presentation
      京都
    • Year and Date
      20090219-20090220
  • [Presentation] 量子輸送現象における軌道理論2009

    • Author(s)
      吉澤一成
    • Organizer
      大学間連携事業シンポジウム
    • Place of Presentation
      名古屋
    • Year and Date
      20090123-20090124
  • [Presentation] Synthesis of Iron-Sulfur Clusters Relevant to the Active Sites of Nitrogenase2009

    • Author(s)
      K. Tatsumi, Y. Ohki
    • Organizer
      International Symposium on Chemistry of Reductases II
    • Place of Presentation
      名古屋
    • Year and Date
      20090115-20090116
  • [Presentation] Activation of Small Molecules by Niobium and Tantalum Complexes Bearing Phenoxide Ligands2009

    • Author(s)
      H. Kawaguchi
    • Organizer
      International Symposium on Chemistry of Reductases II
    • Place of Presentation
      名古屋
    • Year and Date
      20090115-20090116
  • [Presentation] ニトロゲナーゼの活性中心を模倣する鉄-硫黄クラスターの合成2009

    • Author(s)
      大木靖弘
    • Organizer
      特定領域研究「元素相乗系の化合物の化学」第4回シンポジウム
    • Place of Presentation
      広島
    • Year and Date
      20090109-20090110
  • [Presentation] Activation of H_2 by S-donor/O-donor-bridged Heterodunuclear Complexes relevant to the Function of [NiFe] Hydrogenase2009

    • Author(s)
      K. Tatsumi, T. Matsumoto, Y. Ohki
    • Organizer
      International Conference on Hydrogen and Hydrogen Storage: Methods and Materials
    • Place of Presentation
      Bangalore (India)
    • Year and Date
      20090103-20090106
  • [Presentation] 酵素の進化:構造と活性2009

    • Author(s)
      樋口芳樹
    • Organizer
      第34回生命の起源および進化学会学術講演会シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2009-03-18
  • [Presentation] 還元系金属酵素:化学の新たな挑戦2008

    • Author(s)
      巽和行
    • Organizer
      特定領域研究「実在系の分子理論」シンポジウム
    • Place of Presentation
      札幌
    • Year and Date
      20081216-20081218
  • [Presentation] Quantum Chemical Study on the Biological Conversion of Tyrosine to Dopaquinone2008

    • Author(s)
      K. Yoshizawa
    • Organizer
      The IUMRS International Conference in Asia 2008
    • Place of Presentation
      名古屋
    • Year and Date
      20081209-20081213
  • [Presentation] QM/MM Study of the Catalytic Mechanism of Tyrosinase2008

    • Author(s)
      K. Yoshizawa
    • Organizer
      The Fourth Asian Biological Inorganic Chemistry Conference (AsBIC IV)
    • Place of Presentation
      Jeju (Korea)
    • Year and Date
      20081110-20081113
  • [Presentation] S(O)-Bridged Heteridinuclear Complexes Modeling the Active Site Structure and Function of [NiFe] Hydrogenase2008

    • Author(s)
      K. Tatsumi, T. Matsumoto, Y. Ohki
    • Organizer
      7^<th> Japan-China Joint Symposium on Metal Cluster Compounds
    • Place of Presentation
      札幌
    • Year and Date
      20081021-20081023
  • [Presentation] Chalcogenide-Bridged Ru-Ge Dinuclear Complexes: Protonation Effects upon Structure and Reactions2008

    • Author(s)
      T. Matsumoto
    • Organizer
      The 6th joint seminar University of Munster-Nagoya University
    • Place of Presentation
      名古屋
    • Year and Date
      20081002-20081003
  • [Presentation] 量子輸送現象における軌道理論2008

    • Author(s)
      吉澤一成
    • Organizer
      分子科学討論会
    • Place of Presentation
      福岡
    • Year and Date
      20080914-20080927
  • [Presentation] Computational Mutation Analysis of Coenzyme B_<12>-Dependent Diol Dehy dratase2008

    • Author(s)
      K. Yoshizawa
    • Organizer
      The Eighth Triennial Congress of the World Asso ciation of Theoretical and Computational Chemists (WATOC 2008)
    • Place of Presentation
      Sydney (Australia)
    • Year and Date
      20080914-20080919
  • [Presentation] A New Synthetic Route to Iron-Sulfide Clusters Modeling the Active Site of Nitrogenase2008

    • Author(s)
      K. Tatsumi, Y. Ohki
    • Organizer
      The 21^<st> Congress of the International Union of Crystallography
    • Place of Presentation
      大阪
    • Year and Date
      20080823-20080831
  • [Presentation] Quantum Chemical Approach to Bioinorganic Chemistry: Structure-Reactivity Relationship in Enzymatic Reactions2008

    • Author(s)
      K. Yoshizawa
    • Organizer
      The 2nd International Symposium on "Molecular Theory for Real Systems"
    • Place of Presentation
      岡崎
    • Year and Date
      20080804-20080806
  • [Presentation] ニトロゲナーゼ活性中心の人工構築に向けた鉄-硫黄クラスター合成反応の制御2008

    • Author(s)
      大木靖弘
    • Organizer
      第21回生物無機化学夏季セミナー
    • Place of Presentation
      京都
    • Year and Date
      20080802-20080804
  • [Presentation] [NiFe]ヒドロゲナーゼ活性中心の人工構築:有機金属錯体と金属酵素の接点に迫る2008

    • Author(s)
      大木靖弘
    • Organizer
      第41回有機金属若手の会夏の学校
    • Place of Presentation
      神戸
    • Year and Date
      20080707-20080709
  • [Presentation] New Synthetic Routes to Fe-S Clusters2008

    • Author(s)
      K. Tatsumi
    • Organizer
      Gordon Research Conference on Iron-Sulfur Enzymes
    • Place of Presentation
      New London (USA)
    • Year and Date
      20080608-20080613
  • [Presentation] Dihydrogen Activation by Dinuclear Ge-Ru Complexes Modeling [NiFe] Hydrogenase2008

    • Author(s)
      T. Matsumoto
    • Organizer
      The 2nd International Symposium on Concerto Catalysis
    • Place of Presentation
      東京
    • Year and Date
      20080418-20080419
  • [Presentation] DIXドメインの構造と機能2008

    • Author(s)
      樋口芳樹
    • Organizer
      第31回日本分子生物学会年会・第81回日本生化学会大会合同大会シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2008-12-11
  • [Presentation] 金属元素が操る生体酵素機能:ヒドロゲナーゼの化学2008

    • Author(s)
      巽和行
    • Organizer
      元素戦略・ナノクラスター連続研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2008-12-10
  • [Presentation] Wnt/β-cateninシグナル伝達系で働くDIXドメインの構造と機能2008

    • Author(s)
      樋口芳樹
    • Organizer
      第62回日本癌学会学術総会シンポジウム
    • Place of Presentation
      名古屋
    • Year and Date
      2008-10-30
  • [Presentation] Thiolate-Bridged Dinuclear Fe-Ni Complexes Relevant to the Active Site of [NiFe] Hydrogenase2008

    • Author(s)
      Y. Ohki
    • Organizer
      China-Japan Joint Workshop on Organometallic Chemistry
    • Place of Presentation
      北京
    • Year and Date
      2008-10-09
  • [Presentation] フェノキシド多座配位子を用いた多核錯体反応場の構築と反応2008

    • Author(s)
      川口博之
    • Organizer
      第58回錯体化学討論会
    • Place of Presentation
      金沢
    • Year and Date
      2008-09-20
  • [Presentation] 遷移金属ヒドリド錯体による小分子活性化-配位子の効果-2008

    • Author(s)
      川口博之
    • Organizer
      分子研研究会「配位子場制御に基づく機能性錯体の創成と応用〜生体から触媒およびデバイスまで〜」
    • Place of Presentation
      岡崎
    • Year and Date
      2008-07-19
  • [Presentation] New Synthetic Routes to Iron-Sulfur Clusters: Challenge to Model the Active Sites of Reductases2008

    • Author(s)
      K. Tatsumi
    • Organizer
      分子研研究会「配位子場制御に基づく機能性錯体の創成と応用-生体から触媒およびデバイスまで-」
    • Place of Presentation
      岡崎
    • Year and Date
      2008-07-18
  • [Presentation] 日独共同大学院プログラム-大学院教育国際化の取り組み2008

    • Author(s)
      巽和行
    • Organizer
      分子研研究会「教育・研究環境のあるべき姿」
    • Place of Presentation
      岡崎
    • Year and Date
      2008-05-07
  • [Presentation] 量子化学計算による酵素化学反応へのアプローチ2008

    • Author(s)
      吉澤一成
    • Organizer
      九州大学情報基盤センターセミナー
    • Place of Presentation
      福岡
    • Year and Date
      2008-04-25
  • [Remarks]

    • URL

      http://www.chem.nagoya-u.acjp/~ic/grant/index.html

URL: 

Published: 2010-06-11   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi