2009 Fiscal Year Final Research Report
Developing Shape Language and Building a Special Purpose Computer for Simulating Abstract Chemical Systems
| Project/Area Number |
19300104
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| Research Category |
Grant-in-Aid for Scientific Research (B)
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| Allocation Type | Single-year Grants |
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| Section | 一般 |
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| Research Field |
Bioinformatics/Life informatics
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| Research Institution | The University of Tokyo |
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Principal Investigator |
IKEGAMI Takashi The University of Tokyo, 大学院・総合文化研究科, 教授 (10211715)
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| Co-Investigator(Renkei-kenkyūsha) |
TAIJI Makoto 理化学研究所, ゲノム科学総合研究センター, チームリーダー (10242025)
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| Project Period (FY) |
2007 – 2009
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| Keywords | 専用計算機 / 人工生命 / オートマトン / FPGA / タイルプロセッサー |
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| Research Abstract |
Based on Cellular automaton modeling, we studied artificial cell system and designed a high-speed tile integer processing circuit. As results, we reported simulations of proto-cell systems on 2 and 3 dimensions and argued robustness of living systems. As for the main result, we completed the logical design of the integer processor and emulated its performance on FPGA systems.
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Research Products
(26 results)
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[Journal Article] Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations to periodic biomolecular systems2009
Author(s)
Kikugawa, G., Apostolov, R., Kamiya, N., Taiji, M., Himeno, R., Nakamura, H., Yonezawa, Y.
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Journal Title
J. Comput. Chem 30
Pages: 110-118
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[Journal Article] A novel mutliple-walk parallel algorithm for the Barnes-Hut Treecode on GPUs -towards cost effective2009
Author(s)
Hamada, T., Nitadori, K., Benkrid, K., Ohno, Y., Morimoto, G., Masada, T., Shibata, Y., Oguri, K., Taiji, M.
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Journal Title
high performance N-Body simulation, Computer Science-Research and Development 24(1-2)
Pages: 21-31
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