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2009 Fiscal Year Final Research Report

Stabilization mechanism of collagen helix by using host-guest model peptides

Research Project

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Project/Area Number 19350059
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Polymer chemistry
Research InstitutionOsaka University

Principal Investigator

OKUYAMA Kenji  Osaka University, 大学院・理学研究科, 教授 (30038020)

Co-Investigator(Kenkyū-buntansha) KANEKO Fumitoshi  大阪大学, 大学院・理学研究科, 准教授 (70214468)
KAWAGUCHI Tatsuya  大阪大学, 大学院・理学研究科, 助教 (10314353)
Project Period (FY) 2007 – 2009
Keywordsコラーゲン / 三重らせん / モデルペプチド / 高分解能解析 / 構造安定化
Research Abstract

Understanding the mechanism of the stabilization and destabilization of a collagen helix induced by Hyp residues is one of important issues in structural study of collagen. The present study has revealed the rule for ring puckering of Hyp residues, which governs stabilization and destabilization of collagen helix, by the high resolution structure analyses of collagen-model peptides.

  • Research Products

    (36 results)

All 2010 2009 2008 2007 2006

All Journal Article (15 results) (of which Peer Reviewed: 14 results) Presentation (20 results) Book (1 results)

  • [Journal Article] コラーゲンの分子構造・高次構造2010

    • Author(s)
      奥山健二、川口辰也
    • Journal Title

      高分子論文集 67

      Pages: 229-247

    • Peer Reviewed
  • [Journal Article] Anomalous Dehydration Behavior of a Short Collagen Model Polypeptide, (L-Prolyl-L-ProlylGlycyl)5, in Aqueous Solution2010

    • Author(s)
      T. Shikata, N. Yoshida, K. Okuyama
    • Journal Title

      J. Phys. Chem. Letters

      Pages: 412-416

    • Peer Reviewed
  • [Journal Article] Bachinger, Structure analyses of two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 revealed the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen-helix2010

    • Author(s)
      K. Okuyama, T. Morimoto, H. Narita, T. Kawaguchi, K. Mizuno, H.P.
    • Journal Title

      Protein Sci., Acta Cryst. D66

      Pages: 88-96

    • Peer Reviewed
  • [Journal Article] Structure, Dynamics and Hydration of a Collagen Model Polypeptide, (L-Prolyl-L-ProlylGlycyl)10, in Aqueous Media: a Chemical Equilibrium Analysis of Triple Helix-to-Single Coil Transition2009

    • Author(s)
      T. Shikata, A. Minakawa, K. Okuyama
    • Journal Title

      J. Phys. Chem. B. 113(43)

      Pages: 14504-14512

    • Peer Reviewed
  • [Journal Article] Dynamics and Hydration Behavior of a Short Collagen Model Polypeptide, (L-Prolyl-L-ProlylGlycyl)5, in Aqueous Media2009

    • Author(s)
      T. Shikata, N. Yoshida, A. Minakawa, K. Okuyama
    • Journal Title

      J. Phys. Chem. B. 113(27)

      Pages: 9055-9058

    • Peer Reviewed
  • [Journal Article] High resolution structures of collagen-like peptides, (Pro-Pro-Gly)4-Xaa-Yaa-Gly-(Pro-Pro-Gly)4-Implications for triple-helix hydration and Hyp(X) puckering2009

    • Author(s)
      K. Okuyama, C. Hongo, G. Wu, K. Mizuno, K. Noguchi, S. Ebisuzaki, Y. Tanaka, N. Nishino, H.P. Bachinger
    • Journal Title

      Biopolymers 91

      Pages: 361-372

    • Peer Reviewed
  • [Journal Article] Chain dimension and hydration behavior of collagen model peptides in aqueous solution: [Glycyl-4(R)-Hydroxyprolyl-4(R)-Hydroxyproline]n and [Glycyl-Prolyl-4(R)-Hydroxyproline]n2008

    • Author(s)
      K. Terao, K. Mizuno, M. Murashima, Y. Kita, C. Hongo, K. Okuyama, T. Norisue, H.P. Bachinger
    • Journal Title

      Macromolecules 41

      Pages: 7203-7210

    • Peer Reviewed
  • [Journal Article] Electrostatic interaction explains D-staggered structure of collagen2008

    • Author(s)
      T. Kawaguchi, K. Masakiyo, H. Jin, K. Okuyama
    • Journal Title

      Acta Cryst. A64

      Pages: C331

    • Peer Reviewed
  • [Journal Article] Structure of collagen-helix motif2008

    • Author(s)
      K. Okuyama
    • Journal Title

      Acta Cryst. A64

      Pages: C353

    • Peer Reviewed
  • [Journal Article] Crystal structure of human type III collagen G991-G1032 cystine knot containing peptide shows both 7/2 and 10/3 triple helical symmetries2008

    • Author(s)
      S.P. Boudko, J. Engel, K. Okuyama, K. Mizuno, H.P. Bachinger, M.A. Schumacher
    • Journal Title

      J. Biochem. 283

      Pages: 32580-32589

    • Peer Reviewed
  • [Journal Article] Heat Treatment Strengthens Human Dentin2008

    • Author(s)
      M. Hayashi, E.V. Koychev, K. Okamura, A. Sugeta, C. Hongo, K. Okuyama, S. Ebisu
    • Journal Title

      J. Dent. Res. 87(8)

      Pages: 762-766

    • Peer Reviewed
  • [Journal Article] Revisiting the molecular structure of collagen2008

    • Author(s)
      K. Okuyama
    • Journal Title

      Connect. Tissue Research 49

      Pages: 1-12

    • Peer Reviewed
  • [Journal Article] 7/2-Helical model for collagen-Evidence from native collagen and model peptides-, Proceeding of Recent Trends in Collagen, Diamond Jubilee Conference2008

    • Author(s)
      K. Okuyama
    • Journal Title

      Central Leather Research Institute, Chennai, India

      Pages: 10-19

  • [Journal Article] Unique side chain conformation of a Leu residue in a triple-helical structure2007

    • Author(s)
      K. Okuyama, H. Narita, T. Kawaguchi, K. Noguchi, Y. Tanaka, N. Nishino
    • Journal Title

      Biopolymers 86

      Pages: 212-221

    • Peer Reviewed
  • [Journal Article] Comments on Microfibrillar structure of type I collagen in situ by Orgel, et al.2006

    • Author(s)
      K. Okuyama, H.P. Bachinger, K. Mizuno, S. Boudko, J. Engel, R. Berisio, L. Vitagliano
    • Journal Title

      PNAS, Acta Cryst. 103,D65

      Pages: 9001-9005, 1007-1008

    • Peer Reviewed
  • [Presentation] コラーゲンモデルペプチド(Pro-Pro-Gly)4- Hyp-Yaa-Gly-(Pro-Pro-Gly)4 (Yaa = Thr, Var, Ser)のX線結晶構造解析2009

    • Author(s)
      三山啓太、森本辰也、正清孝一、川口辰也、奥山健二、H.P. Bachinger
    • Organizer
      日本結晶学会年次大会
    • Place of Presentation
      関西学院大学
    • Year and Date
      20091205-20091206
  • [Presentation] Stabilization mechanism by Hyp-Thr-Gly sequence in collagen-helix2009

    • Author(s)
      K. Miyama, T. Morimoto, K. Masakiyo, T. Kawaguchi, K. Okuyama, K. Mizuno, H.P. Bachinger
    • Organizer
      AsCA'09 Joint Conference of the Asean Crystallographic Association and Chinese Crystallography Society
    • Place of Presentation
      Beijing, China
    • Year and Date
      2009-10-24
  • [Presentation] コラーゲンモデルペプチド(Pro-Pro-Gly)4-Hyp-Thr-Gly-(Pro-Pro-Gly)4のX線結晶構造解析2008

    • Author(s)
      三山啓太、Nattha Jiravanichanun、奥山健二、水野一乗、Hans Peter Bachinger
    • Organizer
      第57回高分子討論会
    • Place of Presentation
      大阪市立大学、大阪
    • Year and Date
      20080924-20080926
  • [Presentation] 水溶液中における(Pro-Pro-Gly)10の三重らせんー1本鎖転移挙動2008

    • Author(s)
      喜田裕介、寺尾憲、奥山健二
    • Organizer
      第57回高分子討論会
    • Place of Presentation
      大阪市立大学、大阪
    • Year and Date
      20080924-20080926
  • [Presentation] 高分解能解析で分かったコラーゲンらせんにおける第1層の水と第2層の水2008

    • Author(s)
      奥山健二
    • Organizer
      第57回高分子討論会
    • Place of Presentation
      大阪市立大学、大阪
    • Year and Date
      20080924-20080926
  • [Presentation] Structure of collagen-helix motif, International Union of Crystallography2008

    • Author(s)
      K. Okuyama
    • Organizer
      XXI Congress and General Assembly
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      20080823-20080831
  • [Presentation] Electrostatic interaction explains D-staggered structure of collagen, International Union of Crystallography2008

    • Author(s)
      T. Kawaguchi, K. Masakiyo, H. Jin, K. Okuyama
    • Organizer
      XXI Congress and General Assembly
    • Place of Presentation
      Osaka, Japan
    • Year and Date
      20080823-20080831
  • [Presentation] 小角X線によるアテロコラーゲンD-stagger構造の研究2008

    • Author(s)
      金海哲、川口辰也、服部俊治、奥山健二
    • Organizer
      第57回高分子学会年次大会
    • Place of Presentation
      パシフィコ横浜、横浜
    • Year and Date
      20080528-20080530
  • [Presentation] 7/2らせん対称とアミノ酸配列に基づくコラーゲン繊維中のD-staggerの理解2008

    • Author(s)
      正清孝一、川口辰也、奥山健二
    • Organizer
      第57回高分子学会年次大会
    • Place of Presentation
      パシフィコ横浜、横浜
    • Year and Date
      20080528-20080530
  • [Presentation] 7/2-helical model for collagen-Evidence from native collagen and model peptides-, Recent Trends in Collagen2008

    • Author(s)
      K. Okuyama
    • Organizer
      Diamond Jubilee Conference, Central Leather Research Institute
    • Place of Presentation
      Chennai, India
    • Year and Date
      20080124-20080125
  • [Presentation] コラーゲン繊維におけるD-stagger構造2007

    • Author(s)
      奥山健二、正清孝一、金海哲、川口辰也
    • Organizer
      特定領域研究「生体超分子構造」第4回公開シンポジューム
    • Place of Presentation
      千里ライフサイエンスセンター、豊中
    • Year and Date
      20071218-20071219
  • [Presentation] アテロコラーゲンの小角x線回折2007

    • Author(s)
      金海哲、川口辰也、奥山健二
    • Organizer
      特定領域研究「生体超分子構造」第4回公開シンポジューム
    • Place of Presentation
      千里ライフサイエンスセンター、豊中
    • Year and Date
      20071218-20071219
  • [Presentation] アテロコラーゲンの小角x線回折2007

    • Author(s)
      金海哲、奥山健二
    • Organizer
      日本結晶学会年会
    • Place of Presentation
      東京工業大学
    • Year and Date
      20071201-20071202
  • [Presentation] Stabilization of collagen triple-helix by Arg in the Y position2007

    • Author(s)
      T. Morimoto, M. Haga, C. Hongo, K. Noguchi, K. Okuyama, T. Tanaka
    • Organizer
      The 8th Conference of the Asian Crystallographic Association (AsCA'07)
    • Place of Presentation
      aipei, Taiwan
    • Year and Date
      20071104-20071107
  • [Presentation] Understanding of D-stagger in collagen fibers based on the 7/2-helical structure and amino acid sequence2007

    • Author(s)
      K. Masakiyo, T. Kawaguchi, K, Okuyama
    • Organizer
      The 8th Conference of the Asian Crystallographic Association (AsCA'07)
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      20071104-20071107
  • [Presentation] The structural analysis of the collagen-model peptide, (Pro-Pro-Gly)4- Hyp-Asp-Gly-(Pro-Pro-Gly)4 crystal2007

    • Author(s)
      T. Kawaguchi, M. Shimura, C. Hongo, K. Noguchi, K. Okuyama, K. Mizuno, H.P. Bachinger
    • Organizer
      The 8th Conference of the Asian Crystallographic Association (AsCA'07)
    • Place of Presentation
      Taipei, Taiwan
    • Year and Date
      20071104-20071107
  • [Presentation] Understanding of D-stagger in collagen fibrils2007

    • Author(s)
      K. Okuyama
    • Organizer
      7th Pan Pacific Connective Tissue Societies Symposium, Shangri-La Resort
    • Place of Presentation
      Cairns, Australia
    • Year and Date
      20071028-20071101
  • [Presentation] 静電相互作用に基づくコラーゲン高次構造におけるD-staggerの解読2007

    • Author(s)
      奥山健二
    • Organizer
      特定領域研究「生体超分子構造」第3回ワークショップ
    • Place of Presentation
      ホテルニュウアカオ、熱海、静岡
    • Year and Date
      20070711-20070713
  • [Presentation] 放射光で分かったコラーゲンの分子構造と高次構造2007

    • Author(s)
      奥山健二
    • Organizer
      大阪大学蛋白質研究所セミナー「放射光が拓く繊維高分子のルネッサンス」、蛋白質研究所
    • Place of Presentation
      大阪大学、吹田
    • Year and Date
      20070608-20070609
  • [Presentation] コラーゲンモデルペプチド(Pro-Pro-Gly)4-Hyp-Asp-Gly-(Pro-Pro-Gly)4の結晶構造解析2007

    • Author(s)
      川口辰也、本郷千鶴、奥山健二、志村正紀、野口恵一、水野一乗、H.P. Bachinger
    • Organizer
      高分子学会年次大会
    • Place of Presentation
      国立京都国際会館
    • Year and Date
      20070529-20070531
  • [Book] コラーゲンの分子構造・高次構造、コラーゲンの製造と応用展開(谷原正夫監修)2009

    • Author(s)
      奥山健二
    • Total Pages
      5-30
    • Publisher
      シーエムシー出版

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Published: 2011-06-18   Modified: 2016-04-21  

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