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2010 Fiscal Year Final Research Report

Development of Practical Succinct Data Structures with Application to Huge Data

Research Project

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Project/Area Number 19680001
Research Category

Grant-in-Aid for Young Scientists (A)

Allocation TypeSingle-year Grants
Research Field Fundamental theory of informatics
Research InstitutionKyushu University

Principal Investigator

SADAKANE Kunihiko  Kyushu University, 情報学プリンシプル研究系, 准教授 (20323090)

Project Period (FY) 2007 – 2010
Keywordsデータ圧縮 / 情報検索 / 文字列検索 / 簡潔データ構造 / 接尾辞配列 / 接尾辞木 / 圧縮接尾辞配列 / 順序木
Research Abstract

There had been only theoretical researches on succinct data structures. In this research, we have developed succinct data structures which solve the problems of using them on actual computers. For ordinal trees, we have reduced the size of succinct data structures by 40%, while supporting various operations which had not been supported in existing data structures. We have also created a library of compressed suffix arrays and compressed suffix trees, which are succinct data structures for string searches. By using it, we can reduce the size of the data structure, which is used for searching text data of 110 Gigabytes, from 680 Gigabytes to 22 Gigabytes.

  • Research Products

    (17 results)

All 2011 2010 2009 2008 2007 Other

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (5 results) Remarks (1 results)

  • [Journal Article] Random Access to grammar-Compressed Strings2011

    • Author(s)
      P.Bille, G.M.Landau, R.Raman, K.Sadakane, S.S.Rao, O.Weimann.
    • Journal Title

      Proceedings of ACM-SIAM SODA

      Pages: 373-389

    • Peer Reviewed
  • [Journal Article] Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks2010

    • Author(s)
      T.Asano, J.Jansson, K.Sadakane, R.Uehara, G.Valiente
    • Journal Title

      Proceedings of CPM LNCS 6129

      Pages: 190-201

    • Peer Reviewed
  • [Journal Article] 高速復元可能な接尾辞配列圧縮法2010

    • Author(s)
      田中洋輔, 小野廣隆, 定兼邦彦, 山下雅史
    • Journal Title

      電子情報通信学会論文誌D J93-D(8)

      Pages: 1567-1575

    • Peer Reviewed
  • [Journal Article] Fully-Functional Succinct Trees2010

    • Author(s)
      K.Sadakane, G.Navarro
    • Journal Title

      Proceedings of ACM-SIAM SODA

      Pages: 134-149

    • Peer Reviewed
  • [Journal Article] Succinct Trees in Practice2010

    • Author(s)
      D.Arroyuelo, R.Canovas, G.Navarro, K.Sadakane
    • Journal Title

      Proceedings of Workshop on Algorithm Engineering and Experiments (ALENEX)

      Pages: 84-97

    • Peer Reviewed
  • [Journal Article] A Linear-Time Burrows-Wheeler Transform Using Induced Sorting2009

    • Author(s)
      D.Okanohara, K.Sadakane
    • Journal Title

      Proceedings of SPIRE LNCS5721

      Pages: 90-101

    • Peer Reviewed
  • [Journal Article] Breaking a Time-and-Space Barrier in Constructing Full-Text Indices2009

    • Author(s)
      W.K.Hon, K.Sadakane, W.K.Sung
    • Journal Title

      SIAM Journal on Computing 38(6)

      Pages: 2162-2178

    • Peer Reviewed
  • [Journal Article] An Online Algorithm for Finding the Longest Previous Factors2008

    • Author(s)
      D.Okanohara, K.Sadakane
    • Journal Title

      Proc.16th Annual European Symposium (ESA) LNCS 5193

      Pages: 696-707

    • Peer Reviewed
  • [Journal Article] Faster Suffix Sorting2007

    • Author(s)
      J.Larsson, K.Sadakane
    • Journal Title

      Theoretical Computer Science 387(3)

      Pages: 258-272

    • Peer Reviewed
  • [Journal Article] Compressed Suffix Trees with Full Functionality.2007

    • Author(s)
      K.Sadakane
    • Journal Title

      Theory of Computing Systems. 41(4)

      Pages: 589-607

    • Peer Reviewed
  • [Journal Article] Succinct Data Structures for Flexible Text Retrieval Systems2007

    • Author(s)
      K.Sadakane
    • Journal Title

      Journal of Discrete Algorithms 5(1)

      Pages: 12-22

    • Peer Reviewed
  • [Presentation] 文法圧縮された文字列のランダムアクセス2010

    • Author(s)
      定兼邦彦
    • Organizer
      日本オペレーションズ・リサーチ学会研究部会画期における最適化
    • Place of Presentation
      京都大学
    • Year and Date
      2010-12-07
  • [Presentation] 順序木の簡単・簡潔な表現法2009

    • Author(s)
      定兼邦彦
    • Organizer
      日本オペレーションズ・リサーチ学会研究部会画期における最適化
    • Place of Presentation
      京都大学
    • Year and Date
      2009-11-26
  • [Presentation] 動的簡潔順序木2009

    • Author(s)
      定兼邦彦
    • Organizer
      電子情報通信学会コンピュテーション研究会
    • Place of Presentation
      京都大学
    • Year and Date
      2009-04-17
  • [Presentation] 括弧列の簡単・簡潔な表現法2008

    • Author(s)
      定兼邦彦
    • Organizer
      電子情報通信学会コンピュテーション研究会
    • Place of Presentation
      東北大学
    • Year and Date
      2008-10-10
  • [Presentation] DNA配列に適した圧縮全文索引2008

    • Author(s)
      定兼邦彦
    • Organizer
      電子情報通信学会コンピュテーション研究会
    • Place of Presentation
      日本IBM東京基礎研究所
    • Year and Date
      2008-03-10
  • [Remarks] ホームページ等

    • URL

      http://researchmap.jp/sada/csalib/

URL: 

Published: 2012-02-13   Modified: 2016-04-21  

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