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2012 Fiscal Year Final Research Report

Functional Diversity of Visual Pigments and Photoreceptor Cells

Research Project

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Project/Area Number 20227002
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Animal physiology/Animal behavior
Research InstitutionKyoto University

Principal Investigator

SHICHIDA Yoshinori  京都大学, 大学院・理学研究科, 教授 (60127090)

Co-Investigator(Kenkyū-buntansha) IMAMOTO Yasushi  京都大学, 大学院・理学研究科, 准教授 (80263200)
YAMASHITA Takahiro  京都大学, 大学院・理学研究科, 助教 (50378535)
Co-Investigator(Renkei-kenkyūsha) NAKATANI Kei  筑波大学, 大学院・生命環境科学研究科, 准教授 (20125040)
Project Period (FY) 2008 – 2012
Keywords動物生理化学 / 視覚
Research Abstract

We have investigated the molecular mechanisms that underlie the diversity of cell responses and physiological functions, using the photoreceptive system of animals as a model system. Differences in molecular properties between rhodopsin and cone visual pigments are the molecular basis of the differences in photoresponse between rods and cones. We characterized differences in molecular properties by using genetically modified mice and extensive in vitro experiments. Additionally, we demonstrated unique properties of visual and non-visual opsins that have independently diversified, and identified the amino acid residues responsible for these properties.

  • Research Products

    (66 results)

All 2013 2012 2011 2010 2009 2008 Other

All Journal Article (32 results) (of which Peer Reviewed: 32 results) Presentation (24 results) Book (7 results) Remarks (3 results)

  • [Journal Article] Glutamate acts as a partial inverse agonist to metabotropic glutamate receptor with a single amino acid mutation in the transmembrane domain.2013

    • Author(s)
      M. Yanagawa, T. Yamashita and Y. Shichida
    • Journal Title

      J. Biol. Chem.

      Volume: 288 Pages: 9593-601

    • DOI

      DOI:10.1074/jbc.M112.437780

    • Peer Reviewed
  • [Journal Article] Chloride-dependent spectral tuning mechanism of L-group cone visual pigments.2013

    • Author(s)
      T. Yamashita, S. Nakamura, K. Tsutsui, T. Morizumi and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 52 Pages: 1192-7

    • DOI

      DOI:10.1021/bi3016058

    • Peer Reviewed
  • [Journal Article] Spectroscopic analysis of the effect of chloride on the active intermediates of the primate L group cone visual pigment.2012

    • Author(s)
      T. Morizumi, K. Sato and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 10017-23

    • DOI

      DOI:10.1021/bi300995s

    • Peer Reviewed
  • [Journal Article] Unique haplotype in exon 3 of cone opsin mRNA affects splicing of its precursor, leading to congenital color vision defect.2012

    • Author(s)
      H. Ueyama, S. Muraki-Oda, S. Yamade, S. Tanabe, T. Yamashita, Y. Shichidaand H. Ogita.
    • Journal Title

      Biochem. Biophys. Res. Commun.

      Volume: 424 Pages: 152-7

    • DOI

      DOI:10.1016/j.bbrc.2012.06.094

    • Peer Reviewed
  • [Journal Article] Photochemical properties of mammalian melanopsin.2012

    • Author(s)
      T. Matsuyama, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 5454-62

    • DOI

      DOI:10.1021/bi3004999

    • Peer Reviewed
  • [Journal Article] Comparative studies on the late bleaching processes of four kinds of cone visual pigments and rod visual pigment2012

    • Author(s)
      K. Sato, T. Yamashita, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 4300-8

    • DOI

      DOI:10.1021/bi3000885

    • Peer Reviewed
  • [Journal Article] The C-terminus of the G protein αsubunit controls the affinity of nucleotides.2012

    • Author(s)
      N. Kimata, T. Yamashita, T. Matsuyama, Y. Imamoto and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 2768-74

    • DOI

      DOI:10.1021/bi201702d

    • Peer Reviewed
  • [Journal Article] A non-mammalian type opsin 5 functions dually in the photoreceptive and non-photoreceptive organs of birds.2012

    • Author(s)
      H. Ohuchi, T. Yamashita, S. Tomonari, S. Fujita-Yanagibayashi, K. Sakai, S. Noji and Y. Shichida
    • Journal Title

      PLoS One

      Volume: 7 Pages: e31534

    • DOI

      DOI:10.1371/journal.pone.0031534

    • Peer Reviewed
  • [Journal Article] Photochemical nature of parietopsin.2012

    • Author(s)
      K. Sakai, Y. Imamoto, C.Y. Su, H. Tsukamoto, T. Yamashita, A. Terakita, K.W. Yau and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 51 Pages: 1933-41

    • DOI

      DOI:10.1021/bi2018283

    • Peer Reviewed
  • [Journal Article] Depth perception from image defocus in a jumping spider.2012

    • Author(s)
      T. Nagata, M. Koyanagi, H. Tsukamoto, S. Saeki, K. Isono, Y. Shichida, F. Tokunaga, M. Kinoshita, K. Arikawa and A. Terakita.
    • Journal Title

      Science

      Volume: 335 Pages: 469-71

    • DOI

      DOI:10.1126/science.1211667

    • Peer Reviewed
  • [Journal Article] Vertebrate ancient-long opsin has molecular properties intermediate between those of vertebrate and invertebrate visual pigments2011

    • Author(s)
      K. Sato, T. Yamashita, H. Ohuchi and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 50 Pages: 10484-90

    • DOI

      DOI:10.1021/bi201212z

    • Peer Reviewed
  • [Journal Article] Comparative fluorescence resonance energy transfer analysis of metabotropic glutamate receptors: implications about the dimeric arrangement and rearrangement upon ligand bindings.2011

    • Author(s)
      M. Yanagawa, T. Yamashita and Y. Shichida
    • Journal Title

      J. Biol. Chem

      Volume: 286 Pages: 22971-81

    • DOI

      DOI:10.1074/jbc.M110.206870

    • Peer Reviewed
  • [Journal Article] Chimeric microbial rhodopsins containing the third cytoplasmic loop of bovine rhodopsin.2011

    • Author(s)
      A. Nakatsuma, T. Yamashita, K. Sasaki, A. Kawanabe, K. Inoue, Y. Furutani, Y. Shichida and H. Kandori
    • Journal Title

      Biophys. J.

      Volume: 100 Pages: 1874-82

    • DOI

      DOI:10.1016/j.bpj.2011.02.054

    • Peer Reviewed
  • [Journal Article] Beta-arrestin functionally regulates the non-bleaching pigment parapinopsin in lamprey pineal.2011

    • Author(s)
      E. Kawano-Yamashita, M. Koyanagi, Y. Shichida, T. Oishi, S. Tamotsu and A. Terakita
    • Journal Title

      PLoS One

      Volume: 6 Pages: e16402

    • DOI

      DOI:10.1371/journal.pone.0016402

    • Peer Reviewed
  • [Journal Article] Opn5 is a UV-sensitive bistable pigment that couples with Gi subtype of G protein.2010

    • Author(s)
      T. Yamashita, H. Ohuchi, S. Tomonari, K. Ikeda, K. Sakai and Y. Shichida
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 107 Pages: 22084-9

    • DOI

      DOI:10.1073/pnas.1012498107

    • Peer Reviewed
  • [Journal Article] Evolution and mechanism of spectral tuning of blue-absorbing visual pigments in butterflies.2010

    • Author(s)
      M. Wakakuwa, A. Terakita, M. Koyanagi, D.G. Stavenga, Y. Shichidaand K. Arikawa
    • Journal Title

      PLoS One

      Volume: 5 Pages: e15015

    • DOI

      DOI:10.1371/journal.pone.0015015

    • Peer Reviewed
  • [Journal Article] Photosensitivities of rhodopsin mutants with a displaced counterion2010

    • Author(s)
      K. Tsutsui and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 10089-97

    • DOI

      DOI:10.1021/bi101020p

    • Peer Reviewed
  • [Journal Article] Functional analysis of the second extracellular loop of rhodopsin by characterizing split variants2010

    • Author(s)
      K. Sakai, Y. Imamoto, T. Yamashitaand Y. Shichida
    • Journal Title

      Photochem. Photobiol. Sci.

      Volume: 9 Pages: 1490-7

    • DOI

      DOI:10.1039/c0pp00183j

    • Peer Reviewed
  • [Journal Article] Multiple functions of Schiff base counterion in rhodopsins.2010

    • Author(s)
      K. Tsutsui and Y. Shichida
    • Journal Title

      Photochem. Photobiol. Sci.

      Volume: 9 Pages: 1426-34

    • DOI

      DOI:10.1039/c0pp00134a

    • Peer Reviewed
  • [Journal Article] Vertebrate rhodopsin adaptation to dim light via rapid meta-II intermediate formation.2010

    • Author(s)
      T. Sugawara, H. Imai, M. Nikaido, Y. Imamoto and N. Okada
    • Journal Title

      Mol. Biol. Evol.

      Volume: 27 Pages: 516-19

    • DOI

      DOI:10.1093/molbev/msp252

    • Peer Reviewed
  • [Journal Article] A pivot between helices V and VI near the retinal binding site is necessary for activation in rhodopsins2010

    • Author(s)
      H. Tsukamoto, A. Terakita and Y. Shichida
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Pages: 7351-7

    • DOI

      DOI:10.1074/jbc.M109.078709

    • Peer Reviewed
  • [Journal Article] Covalent bond between ligand and receptor required for efficient activation in rhodopsin.2010

    • Author(s)
      T. Matsuyama, T. Yamashita, H. Imai and Y. Shichida
    • Journal Title

      J. Biol. Chem

      Volume: 285 Pages: 8114-21

    • DOI

      DOI:10.1074/jbc.M109.063875

    • Peer Reviewed
  • [Journal Article] Activation switch in the transmembrane domain of metabotropic glutamate receptor.2009

    • Author(s)
      M. Yanagawa, T. Yamashita and Y. Shichida
    • Journal Title

      Mol. Pharmacol

      Volume: 76 Pages: 201-7

    • DOI

      DOI:10.1124/mol.109.056549

    • Peer Reviewed
  • [Journal Article] Evolution of opsins and phototransduction.2009

    • Author(s)
      Y. Shichida and T. Matsuyama
    • Journal Title

      Philos. Trans. R Soc. Lond. B Biol. Sci

      Volume: 384 Pages: 2881-95

    • DOI

      DOI:10.1098/rstb.2009.0051

    • Peer Reviewed
  • [Journal Article] Direct observation of pH-dependent equilibrium between metarhodopsin I and II and pH-independent interaction of metarhodosin II with transducin C-terminal peptide.2009

    • Author(s)
      K. Sato, T. Morizumi, T. Yamashita and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 49 Pages: 736-41

    • DOI

      DOI:10.1021/bi9018412

    • Peer Reviewed
  • [Journal Article] G protein subtype specificity of rhodopsin intermediates metarhodopsin Ib and metarhodopsin II.2009

    • Author(s)
      T. Morizumi, N. Kimata, A. Terakita, Y. Imamoto, T. Yamashita and Y. Shichida
    • Journal Title

      Photochem. Photobiol.

      Volume: 85 Pages: 57-62

    • DOI

      DOI:10.1111/j.1751-1097.2008.00396.x

    • Peer Reviewed
  • [Journal Article] Thermal recovery of iodopsin from photobleaching intermediates2008

    • Author(s)
      Y. Imamoto and Y. Shichida
    • Journal Title

      Photochem. Photobiol.

      Volume: 84 Pages: 941-8

    • DOI

      DOI:10.1111/j.1751-1097.2008.00332.x

    • Peer Reviewed
  • [Journal Article] E113 is required for the efficient photoisomerization of the unprotonated chromophore in a UV-absorbing visual pigment2008

    • Author(s)
      K. Tsutsui, H. Imai and Y. Shichida
    • Journal Title

      Biochemistry

      Volume: 47 Pages: 10829-33

    • DOI

      DOI:10.1021/bi801377v

    • Peer Reviewed
  • [Journal Article] Conformational change of the transmembrane helices II and IV of metabotropic glutamate receptor involved in G protein activation.2008

    • Author(s)
      T. Yamashita, A. Terakita, T. Kai and Y. Shichida
    • Journal Title

      J. Neurochem.

      Volume: 106 Pages: 850-9

    • DOI

      DOI:10.1111/j.1471-4159.2008.05443.x

    • Peer Reviewed
  • [Journal Article] Pigmented and nonpigmented ocelli in the brain vesicle of the ascidian larva2008

    • Author(s)
      T. Horie, D. Sakurai, H. Ohtsuki, A. Terakita, Y. Shichida, J. Usukura, T. Kusakabe and M. Tsuda
    • Journal Title

      J. Comp. Neurol.

      Volume: 509 Pages: 88-102

    • DOI

      DOI:10.1002/cne.21733

    • Peer Reviewed
  • [Journal Article] First Cytoplasmic Loop of Glucagon-like Peptide-1 Receptor Can Function at the Third Cytoplasmic Loop Position of Rhodopsin.2008

    • Author(s)
      T. Yamashita, K. Tose, and Y. Shichid
    • Journal Title

      Photochem. Photobiol

      Volume: 84 Pages: 931-936

    • DOI

      DOI:10.1111/j.1751-1097.2008.00327.x

    • Peer Reviewed
  • [Journal Article] Expression and comparative characterization of Gq-coupled invertebrate visual pigments and melanopsin.2008

    • Author(s)
      A. Terakita, H. Tsukamoto, M. Koyanagi, M. Sugahara, T. Yamashitaand Y. Shichida
    • Journal Title

      J. Neurochem.

      Volume: 105 Pages: 883-890

    • DOI

      DOI:10.1111/j.1471-4159.2007.05184.x

    • Peer Reviewed
  • [Presentation] Rod and Cone pigments: Molecular properties and functional diversity2012

    • Author(s)
      Y. Shichida
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Ascona/Switzerland
    • Year and Date
      2012-10-04
  • [Presentation] Molecular properties of vertebrate non-visual opsins, Opn5 and Opn5-like protein2012

    • Author(s)
      T. Yamashita
    • Organizer
      15th International Conference on Retinal Proteins
    • Place of Presentation
      Ascona/Switzerland
    • Year and Date
      2012-10-03
  • [Presentation] 最近機能解析の始まったOpn5の意外な光受容機能:光活性化と不活性化2011

    • Author(s)
      七田芳則
    • Organizer
      日本動物学会第82回大会
    • Place of Presentation
      旭川市大雪クリスタルホール/北海道
    • Year and Date
      2011-09-21
  • [Presentation] Single Molecule Detection of Rhodopsin Activation2011

    • Author(s)
      Y. Imamoto
    • Organizer
      第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] What should we learn from animal opsin diversification?2011

    • Author(s)
      T. Yamashita
    • Organizer
      第49回日本生物物理学会年会シンポジウム
    • Place of Presentation
      兵庫県立大/兵庫県
    • Year and Date
      2011-09-17
  • [Presentation] Molecular properties of Opn5 and its functions2011

    • Author(s)
      T. Yamashita
    • Organizer
      5th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      奈良県新公会堂/奈良県
    • Year and Date
      2011-08-01
  • [Presentation] Activation mechanism of visual transduction studied by fluorescence spectroscopy2011

    • Author(s)
      T. Yamashita
    • Organizer
      5th Asia and Oceania Conference on Photobiology
    • Place of Presentation
      奈良県新公会堂/奈良県
    • Year and Date
      2011-07-30
  • [Presentation] Functional evolution of opsins2011

    • Author(s)
      T. Yamashita
    • Organizer
      第13回日本進化学会年会シンポジウム
    • Place of Presentation
      京都大/京都府
    • Year and Date
      2011-07-30
  • [Presentation] 分子からみた光受容の多様性2011

    • Author(s)
      七田芳則
    • Organizer
      日本光医学・光生物学会第33回年会
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2011-07-22
  • [Presentation] 光センサ蛋白質の物性と機能メカニズム2010

    • Author(s)
      今元 泰
    • Organizer
      大阪大学生命機能研究科研究交流会「FBSコロキウム」
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2010-12-15
  • [Presentation] 視覚・光受容のメカニズムと進化2010

    • Author(s)
      七田芳則
    • Organizer
      徳島大学「医工連携ネットワーク形成」に関する講演会
    • Place of Presentation
      徳島大/徳島県
    • Year and Date
      2010-12-14
  • [Presentation] Molecular mechanism regulating active state formation and G protein activation of a prototypical GPCR, vertebrate rhodopsin2010

    • Author(s)
      T. Yamashita
    • Organizer
      第48回日本生物物理学会年会シンポジウム
    • Place of Presentation
      東北大/宮城県
    • Year and Date
      2010-09-21
  • [Presentation] ロドプシン類の機能多様性:変異体解析からなにがわかるか2010

    • Author(s)
      Y. Shichida
    • Organizer
      分子研研究会
    • Place of Presentation
      分子研/愛知県
    • Year and Date
      2010-03-23
  • [Presentation] Functional diversity and evolution of rhodopsins2009

    • Author(s)
      Y. Shichida
    • Organizer
      第25回国際生物学賞記念シンポジウム
    • Place of Presentation
      京都大/京都府
    • Year and Date
      2009-12-03
  • [Presentation] Light-induced conformational change of photoactive yellow protein2009

    • Author(s)
      Y. Imamoto
    • Organizer
      第25回国際生物学賞記念シンポジウム
    • Place of Presentation
      京都大/京都府
    • Year and Date
      2009-12-02
  • [Presentation] Functional Diversity of Vertebrate Rhodopsin2009

    • Author(s)
      Y. Shichida
    • Organizer
      15th International Congress on Photobiology
    • Place of Presentation
      Dusseldorf/Germany
    • Year and Date
      2009-06-20
  • [Presentation] Evolution of Vertebrate Vision :Rods and Cones2009

    • Author(s)
      Y. Shichida
    • Organizer
      The 18th CDB Meeting
    • Place of Presentation
      理研/兵庫県
    • Year and Date
      2009-04-13
  • [Presentation] 蛋白質の構造変化:構造から予測される反応と実際の反応2008

    • Author(s)
      Y. Imamoto
    • Organizer
      第46回日本生物物理学会年会シンポジウム
    • Place of Presentation
      福岡国際会議場/福岡県
    • Year and Date
      2008-12-04
  • [Presentation] 代謝型グルタミン酸受容体の膜貫通領域における構造変化解析2008

    • Author(s)
      T. Yamashita
    • Organizer
      第46回日本生物物理学会年会シンポジウム
    • Place of Presentation
      福岡国際会議場/福岡県
    • Year and Date
      2008-12-04
  • [Presentation] Functional diversity of visual pigments2008

    • Author(s)
      T. Yamashita
    • Organizer
      4th Asia Oceania Conference on Photobiology
    • Place of Presentation
      Varanasi/India
    • Year and Date
      2008-11-25
  • [Presentation] Association of Rhodopsin and Regulatory Protein2008

    • Author(s)
      Y. Imamoto
    • Organizer
      n of Rhodopsin and Regulatory Protein」 4th Asia Oceania Conference on Photobiology
    • Place of Presentation
      Varanasi/India
    • Year and Date
      2008-11-25
  • [Presentation] Functional diversity of animal rhodopsins2008

    • Author(s)
      Y. Shichida
    • Organizer
      13th International Conference on Retinal Proteins
    • Place of Presentation
      Barcelona/Spain
    • Year and Date
      2008-06-17
  • [Presentation] 視物質の進化2008

    • Author(s)
      七田芳則
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2008-04-19
  • [Presentation] 蛋白質構造変化の伝播メカニズム2008

    • Author(s)
      今元 泰
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大/大阪府
    • Year and Date
      2008-04-18
  • [Book] Evolution and Senses2013

    • Author(s)
      Y. Shichida, T. Yamashita, H. Imai and T. Kishida
    • Total Pages
      1-22
    • Publisher
      Springer
  • [Book] 「多様な光環境への動物の適応メカニズム」 「生き物たちのつづれ織り上」2012

    • Author(s)
      七田芳則、山下高廣
    • Total Pages
      154-63
    • Publisher
      京都大学学術出版会
  • [Book] タンパク質共役型受容体の二量体化による機能制御メカニズム2011

    • Author(s)
      柳川正隆、七田芳則
    • Total Pages
      949
  • [Book] 脊椎動物新規紫外光受容タンパク質~ヒトも紫外線を感じる?~2011

    • Author(s)
      山下高廣
    • Total Pages
      186-7
  • [Book] 「脊椎動物の視細胞が光を受けるしくみ」 「見える光、見えない光」2009

    • Author(s)
      山下高廣、七田芳則
    • Total Pages
      37-56
    • Publisher
      共立出版
  • [Book] 代謝型グルタミン酸受容体の細胞質領域の構造変化2008

    • Author(s)
      山下高廣
    • Total Pages
      338-9
  • [Book] 「視覚の進化」ルネッサンス京都21 五感シリーズIV 「眼がとらえた情報がこころに与える影響」大東肇・中井吉英 編2008

    • Author(s)
      七田芳則
    • Total Pages
      83-112
    • Publisher
      オフィスエム
  • [Remarks] 2010年12月8日掲載 朝日新聞、毎日新聞、京都新聞、徳島新聞(共同通信社配信記事)

  • [Remarks] 2011年1月24日掲載 読売新聞

  • [Remarks] ホームページ

    • URL

      http://photo1.biophys.kyoto-u.ac.jp/shichida/home_jp.html

URL: 

Published: 2014-08-29  

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