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2011 Fiscal Year Final Research Report

Structural basis for molecular mechanisms of substrate recognition and transport regulation by membrane transporters

Research Project

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Project/Area Number 20227003
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research InstitutionThe University of Tokyo (2009-2012)
Tokyo Institute of Technology (2008)

Principal Investigator

NUREKI Osamu  東京大学, 大学院・理学系研究科, 教授 (10272460)

Co-Investigator(Kenkyū-buntansha) MATURANA Andres  名古屋大学, 農学部, 准教授 (10452004)
ITO Koichi  東京大学, 新領域創成科学研究科, 教授 (10262073)
Project Period (FY) 2008-05-12 – 2013-03-31
KeywordsX 線結晶構造解析 / チャネル / トランスポーター / 電気生理学解析 / 遺伝学解析
Research Abstract

Membrane transporters maintain the intracellular circumstances by strictly regulating the import and export of metal ions, sugars, metabolites and drugs etc. To elucidate (A) how the transporters drive their transport, (B) how the transporters exclusively select their specific substrates and (C) how the transporters regulate their transporting activities at at an atomic resolution, we performed (1) structure determination by X-ray crystallography, (2) dynamic property analysis by MD simulation and (3) in vivo and in vitro complementary experiments, focusing on ion transporters of magnesium, iron and heavy metals, light-gated cation channels, protein transporters, peptide transporter and multidrug transporters. Especially, we uncovered the essential molecular mechanism of membrane transport by comparing and integrating the functional mechanisms of transporters specific for various kinds of target solutes.

  • Research Products

    (26 results)

All 2011 2010 2009 2008 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (6 results) Book (6 results) Remarks (1 results)

  • [Journal Article] Structure and function of a membrane component SecDF that enhances protein export2011

    • Author(s)
      T.Tsukazaki,H.Mori,Y.Ech izen,R.Ishitani, S.Fukai,T.Tanaka,A.Perederina,D.G.Vassylyev, T.Koh no,A.D.Maturana, K.Itoand O.
    • Journal Title

      NurekiNature

      Volume: 474 Pages: 235-238

    • Peer Reviewed
  • [Journal Article] Crystal structure of autotaxin and insig ht into GPCR activation by lipid mediat ors2011

    • Author(s)
      H. Nishimasu, S.Okudaira, K.Ha ma, E.Mihara, N.Dohmae, A.Inoue, R.Ishitani, J.Takagi, J.Aokiand O.
    • Journal Title

      NurekiNat.Struct.Mol.Biol

      Volume: 18 Pages: 205-212

    • Peer Reviewed
  • [Journal Article] Molecular mechanisms underlying the ea rly stage of protein translocation throug h the Sec translocon2010

    • Author(s)
      T.Mori,R..Ishita ni,T. Tsukazaki, O,Nureki and Y
    • Journal Title

      Sug itaBiochemistry

      Volume: 49 Pages: 945-950

    • Peer Reviewed
  • [Journal Article] Mg^2+-dependent gating of bacterial MgtE channel underlies Mg^2+ homeostasis2009

    • Author(s)
      M. Hattori, N. Iwase, N. Furuya, Y. Tana ka, T. Tsukazaki, R. Ishitani, M. E. Ma guire, K. Ito, A. Maturana and O
    • Journal Title

      Nure ki EMBO J

      Volume: 28 Pages: 3602-3612

    • Peer Reviewed
  • [Journal Article] Structural basis for translational fidelity ensured by tRNA lysidine synthetase2009

    • Author(s)
      K. Nakanishi, L. Bonnefond, S. Kimura, T. Suzuki, R. Ishitani and O
    • Journal Title

      Nureki.Nature

      Volume: 461 Pages: 1144-1148

    • Peer Reviewed
  • [Journal Article] Structural basis of novel interactions bet ween the small-GTPase and GDI-like do mains in prokaryotic FeoB iron transport er2009

    • Author(s)
      M. Hattori, Y. Jin, H. Nishimasu, Y. Tanaka, M. Mochizuki, T. Uchiumi, R. Ishitani, K. Ito and O.
    • Journal Title

      Nureki.Structure

      Volume: 17 Pages: 1345-1355

    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray dif fraction analysis of the truncated cytosol ic domain of the iron transporter FeoB2009

    • Author(s)
      Y. Jin, M. Hattori, H. Nisimasu, R. Is hitani and O.
    • Journal Title

      NurekiActa.Crystallogr.Sect.F

      Volume: 65 Pages: 784-787

    • Peer Reviewed
  • [Journal Article] Tuberous Sclerosis Tumor Suppressor C omplex-like Complexes Act as GTPase-a ctivating Proteins for Ral GTPases2009

    • Author(s)
      R. Shirakawa, S.Fukai, M.Kawato, T.Hi gashi, H. Kondo, T.Ikeda, E.Nakayam a, K.Okawa, O.Nureki, T.Kimura, T.Kita and H. Horiuchi.J
    • Journal Title

      Biol. Chem

      Volume: 284 Pages: 21580-21588

    • Peer Reviewed
  • [Journal Article] Crystal structure of the cytosolic domainof the cation diffusion facilitator famil y protein2009

    • Author(s)
      T.Higuchi, M.Hattori, Y.Tanaka, R. Ishitani and O
    • Journal Title

      Nureki.Proteins

      Volume: 76 Pages: 768-771

    • Peer Reviewed
  • [Journal Article] Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality2009

    • Author(s)
      K.Nozawa, P.O'Donogh ue, S.Gundllapalli, Y.Araiso, R. Ishita ni, T. Umehara, D.S^^oll and O.Nureki
    • Journal Title

      Nature

      Volume: 457 Pages: 1163-1167

    • Peer Reviewed
  • [Journal Article] Conformational transition of Sec machi nery inferred from bacterial SecYE struc tures2008

    • Author(s)
      T.Tsukazaki, H. Mori, S.Fukai, R.Ishitani, T.Mori, N.Dohmae, A.P erederina, Y.Sugita, D.G.Vassylyev, K.Ito and O.Nureki
    • Journal Title

      Nature

      Volume: 455 Pages: 988-91

    • Peer Reviewed
  • [Journal Article] Mg^2+-sensing mechanism of Mg2+ trans porter MgtE probed by molecular dyna mics study2008

    • Author(s)
      R.Ishitani, Y.Sugita, N.Dohmae, N.Furuya, M.Hattori, and O.
    • Journal Title

      Nureki Proc. Natl. Acad. USA

      Volume: 105 Pages: 15393-15398

    • Peer Reviewed
  • [Journal Article] Regulation of platelet dense granule se cretion by the Ral GTPase-Exocyst path way2008

    • Author(s)
      M.kawato, R.Shirakawa, H.Kon do, T.Higashi, T. Ikeda, K.Okawa, S.Fukai, O.Nureki, T.Kita, H.Horiuchi J
    • Journal Title

      Biol. Chem

      Volume: 283 Pages: 166-174

    • Peer Reviewed
  • [Presentation] The 2011 International Symposium onAminoacyl-tRNA Synthetases2011

    • Author(s)
      O.Nureki
    • Organizer
      Archaeal elongation factor acts an omnipotent carrier GTPase in translational elongation, termination and mRNA syrveillance
    • Place of Presentation
      Snowbird, Utah, USA
    • Year and Date
      20110925-30
  • [Presentation] The 10th Conference of the Asian Crystallographic Association2010

    • Author(s)
      O.Nureki
    • Organizer
      Structural analysis of bacterial Sec translocon machinery
    • Place of Presentation
      Busan,Korea
    • Year and Date
      20101031-1103
  • [Presentation] The 2 nd Annual Meeting of Structural Biology of Membrane Proteins2010

    • Author(s)
      O.Nureki
    • Organizer
      Structural basis for the gating mechanism of cation and polypeptide channels
    • Place of Presentation
      Basel, Switzerland
    • Year and Date
      20100608-11
  • [Presentation] 11th International Congress on Amino Acids, Peptides and Proteins2009

    • Author(s)
      O.Nureki
    • Organizer
      Genetic code expansion by non-canonical tRNA synthetases
    • Place of Presentation
      Vienna,Austria
    • Year and Date
      2009-08-06
  • [Presentation] VIII European Symposium of The Protein Society2009

    • Author(s)
      O. Nureki
    • Organizer
      Multiple conformational states of Sec machinery components implicated from bacterial SecYE crystal structure
    • Place of Presentation
      Zurich, Switzerland
    • Year and Date
      2009-06-16
  • [Presentation] The Joint 2nd Pacific Rim International Conference on Protein Science2008

    • Author(s)
      O. Nureki
    • Organizer
      Gating control; mechanism of magnesium transporter MgtE
    • Place of Presentation
      Cairns, Australia
    • Year and Date
      20080622-26
  • [Book] タンパク質を膜透過させる分子装置2011

    • Author(s)
      塚崎智也
    • Total Pages
      471-477
    • Publisher
      濡木理化学工業
  • [Book] ピロリジン翻訳直行性のメカニズム2010

    • Author(s)
      野澤佳世,石谷隆一郎
    • Total Pages
      617-623
    • Publisher
      濡木理生化学
  • [Book] ピロリジルtRNA合成における翻訳の直交性の分子構造基盤2009

    • Author(s)
      濡木理
    • Total Pages
      1660-1669
    • Publisher
      蛋白質核酸酵素5
  • [Book] CCA付加反応のダイナミクス2008

    • Author(s)
      濡木理
    • Total Pages
      429-434
    • Publisher
      生化学
  • [Book] マグネシウムトランスポーターによる細胞内マグネシウムバランス調節機構2008

    • Author(s)
      濡木理,服部素之,石谷隆一郎
    • Total Pages
      933-939
    • Publisher
      生化学
  • [Book] MgtEトランスポーターによるMg2+のホメオスタシス機構2008

    • Author(s)
      服部素之,濡木理
    • Total Pages
      242-248
    • Publisher
      蛋白質核酸酵素
  • [Remarks]

    • URL

      http://www.nurekilab.net/

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Published: 2014-08-29  

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