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2011 Fiscal Year Final Research Report

Investigation for functionalities of rhizo-biocomplex to minimize highly adverse conditions in association with organic sink in the rhizosphere and its utilization in agricultural use

Research Project

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Project/Area Number 20248033
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Boundary agriculture
Research InstitutionHokkaido University

Principal Investigator

HASHIDOKO Yasuyuki  北海道大学, 大学院・農学研究院, 教授 (40281795)

Co-Investigator(Kenkyū-buntansha) HARAGUCHI Akira  北九州市立大学, 国際環境工学部, 教授 (50271630)
KIMURA Atsuo  北海道大学, 大学院・農学研究院, 教授 (90186312)
SAKIHAMA Yasuko  北海道大学, 大学院・農学研究院, 助教 (10344491)
TAMAI Yutaka  北海道大学, 大学院・農学研究院, 准教授 (50281796)
MATSUURA Hideyuki  北海道大学, 大学院・農学研究院, 准教授 (20344492)
Project Period (FY) 2008 – 2011
Keywords窒素固定 / 菌体外酵素 / 生物的硝化抑制 / 負荷環境緩和 / コンソーシアム形成 / 熱帯泥炭 / 窒素ロス / 難分解性多糖
Research Abstract

We investigated rhizo-biosystems that enable to mitigate adverse soils in Kalimantan, Indonesia. Burkholderia sp. strain A-KA that had been isolated from the rhizosphere of Imperata cylindrica grown in medium-strongly acidic peatland showed a growth-helper activity toward other rhizosphere bacteria, such as Sphingomonas sp. Burkholderia mimosarum isolated from rhizosphere of paddy rice tolerant to acid-sulfate soil suppressed tropolone production of B. plantarii, a bacterium causative of rice blight disease, while promoted growth of diverse root-and seed-epiphytic bacteria. Among rhizobacteria that had isolated from dipterocarpous sapling adapting to polyphenol-rich tropical peat soil, pyrogallol-containing plant polyphenols activated Burkholderia unamae CK-43B to degrade indole and some other N-heterocyclic aromatic compounds. In the coralloid root symbiotic systems between Cycas revoluta root and a nitrogen-fixing cyanobacterium Nostoc punchiforme, a diacylglycerol was found to be the principle of hormogoniu-inducing factor on the cyanobacterium necessary to its host-recognition. Also, we successfully isolated and characterized signal compounds from a rhizobacterium Pseudomonas jessenii strain EC-S101 isolated from spinach root and from a rhizosphere fungus Trichoderma virens strain PS1-7 isolated from paddy root. In the rhizosphere, nitrous oxide emitting bacteria in tropical peat soil were missing their nitrous oxide reductase (N2OR) genes, and affected its denitrification by several secondary metabolites of plants

  • Research Products

    (29 results)

All 2012 2011 2010 2009 2008 Other

All Journal Article (10 results) (of which Peer Reviewed: 10 results) Presentation (16 results) Book (3 results)

  • [Journal Article] Active N20 emission from bacterial microbiota of Andisol farmland and characterization of some N20 emitters2012

    • Author(s)
      Hisahaya Takeda, Naoki Takahashi, Ryusuke Hatano, and Yasuyuki Hashidoko
    • Journal Title

      Journal of Basic Microbiology

      Volume: online published

    • DOI

      DOI:10.1002/jobm.201100241

    • Peer Reviewed
  • [Journal Article] Photosynthetic nitrogen and water use efficiency of acacias and eucalypts seedlings as afforestation species2012

    • Author(s)
      E. Novriyanti, M. Watanabe, M. Kobayashi, T. Takeda, Y. Hashidoko, T. Koike
    • Journal Title

      Photosynthetica

      Volume: online published

    • DOI

      DOI:10.1007/s00374-011-0657-y

    • Peer Reviewed
  • [Journal Article] Beetroot betalain inhibits peroxynitrite-mediated tyrosine nitration and DNA strand cleavage2012

    • Author(s)
      Yasuko Sakihama, Makiko Maeda, Satoshi Tahara, Makoto Hashimoto, Yasuyuki Hashidoko
    • Journal Title

      Free Radical Research

      Pages: 4693-4699

    • DOI

      DOI:10.3109/10715762.2011.641157.

    • Peer Reviewed
  • [Journal Article] Trace amounts of furan-2-carboxylates determine quality of solid plates for bacterial culture2012

    • Author(s)
      Shintaro Hara, Reika Isoda, Teemu Tahvanainen, Yasuyuki Hashidoko
    • Journal Title

      PLoS One

      Volume: accepted

    • Peer Reviewed
  • [Journal Article] Effective degradation of tannic acid by immobilized rumen microbes of sika deer (Cervus nippon yesoensis) in winter. Animal Feed2010

    • Author(s)
      T. Hiura, Y. Hashidoko, Y. Kobayashi, S. Tahara
    • Journal Title

      Science and Technology

      Pages: 143-152

    • Peer Reviewed
  • [Journal Article] Inhibitory effects of furanone metabolites of a rhizobacterium, Pseudomonas jessenii, on phytopathogenic Aphanomyees cochlioides and Pythium aphanidermatum2010

    • Author(s)
      Abhinandan Deora, Eduardo Hatano, Satoshi Tahara, and Yasuyuki Hashidoko
    • Journal Title

      Plant Pathology

      Volume: 59 Pages: 84-99

    • Peer Reviewed
  • [Journal Article] Extreme high yield of tropical rice grown without fertilizer on acid sulfate soil in South Kalimantan, Indonesia2010

    • Author(s)
      E. Purnomo, Y. Hashidoko, T. Hasegawa, M. Osaki
    • Journal Title

      Journal of Tropical Soils

      Volume: 15 Pages: 33-38

    • Peer Reviewed
  • [Journal Article] Burkholderia vietnamiensis isolated from root tissues of nipa palm (Nypa fruticans) in Sarawak, Malaysia, proved to be its major endophytic nitrogen-fixing bacterium2010

    • Author(s)
      S. -Y. Tang, S. Hara, L. Melling, K. J. Goh, Y. Hashidoko
    • Journal Title

      Bioscience, Biotechnology and Biochemistry

      Volume: 74 Pages: 1972-1975

    • Peer Reviewed
  • [Journal Article] Salkowski' s reagent test as a primary screening index for functionalities of rhizobacteria isolated from wild dipterocarp saplings naturally growing on medium-strongly acidic tropical peat soil2010

    • Author(s)
      A. Rahman, I. R. Sitepu, S. -Y. Tang, Y. Hashidoko
    • Journal Title

      Bioscience, Biotechnology and Biochemistry

      Volume: 74 Pages: 2202-2208

    • Peer Reviewed
  • [Journal Article] Studies on functional bacteria of Indonesian tropical forest plants for biorehabilitation of degraded lands2008

    • Author(s)
      I. R. Sitepu, Y. Hashidoko, Aryanto, M. Turjaman, S. Tahara, S. S. Miftahuliyah, E. Santoso
    • Journal Title

      Journal of Forestry Research

      Volume: Indonesia, 8 Pages: 21-35

    • Peer Reviewed
  • [Presentation] Tropical peat soil turns into a potent source of N20 emission after inappropriate management of reclaimed peatland2012

    • Author(s)
      Yasuyuki Hashidoko
    • Organizer
      5th EAFES (East Asian Federation of Ecological Societies) Symposium (Invited speaker)
    • Place of Presentation
      Ohtsu, Ryukoku University
    • Year and Date
      2012-03-18
  • [Presentation] Genetic analysis of active N20-emitting bacteria from tropical peat soils for their nitrous oxide reductase gene2011

    • Author(s)
      Y. Hashidoko, H. Takeda, U. Darung, L. Melling, R. Hatano
    • Organizer
      19th The World Congress of Soil Science
    • Place of Presentation
      Brisbane Convention and Exhibition Centre, Brisbane, Australia.
    • Year and Date
      20110804-08
  • [Presentation] Actively N20 emitting β-proteobacteria from South East Asian tropical peatland soils2011

    • Author(s)
      Y. Hashidoko, H. Takeda, N. Takahashi, S. Hara, U. Darung, H. C. Wijaya, R. Hatano, L. Melling
    • Organizer
      Their physicochemical responses genetic traits and probable origins
    • Place of Presentation
      Malaga, Spain
    • Year and Date
      2011-09-15
  • [Presentation] International Symposium on Functional Foods and Bioprocess Technology for Food Industry (Invited Speaker)2011

    • Author(s)
      Y. Hashidoko
    • Organizer
      Kyongsan
    • Place of Presentation
      Korea. (Yong Nam University)
    • Year and Date
      2011-06-11
  • [Presentation] 根面・根内微生物の機能性からみた熱帯植物の負荷土壌耐性戦略2011

    • Author(s)
      橋床泰之
    • Organizer
      第37回植物資源科学シンポジウム(招待講演)
    • Place of Presentation
      倉敷・倉敷市芸文館ホール
    • Year and Date
      2011-03-07
  • [Presentation] ソテツと蜘Nostoc sp.の共生によるソテツ・サンゴ状根形成に関わるシグナル物質の検索2010

    • Author(s)
      田中慎人,崎浜靖子,橋床泰之
    • Organizer
      第45回植物化学調節学会年次大会
    • Place of Presentation
      神戸,神戸大学百年記念会館
    • Year and Date
      20101101-02
  • [Presentation] ニッパヤシ根圏に生息するBurkhoideria属細菌群の系統分析とそれらの窒素固定能の検定2010

    • Author(s)
      橋床泰之, Sui-Yan Tang, Lulie Melling, Kah-Joo Goh
    • Organizer
      日本土壌肥料学会大会
    • Place of Presentation
      札幌,北大農学部
    • Year and Date
      2010-09-07
  • [Presentation] 熱帯泥炭土壌の高N2O生成細菌はnosZを持っていなかった2010

    • Author(s)
      橋床泰之,竹田久隼,高橋直希,Hanny Wijaya,波多野隆介,Lulie Melling
    • Organizer
      日本土壌肥料学会2011年大会
    • Place of Presentation
      つくば市、国際会議場
    • Year and Date
      2010-09-07
  • [Presentation] 寒天粉末に含まれるフランカルボン酸誘導体は土壌細菌の活動を制限する2010

    • Author(s)
      原新太郎,橋床泰之
    • Organizer
      日本土壌肥料学会2011年大会
    • Place of Presentation
      つくば市、国際会議場
    • Year and Date
      2010-09-07
  • [Presentation] Interaction between Sphingomonas. sp. and other functional rhizobacteria via secondary metabolites2010

    • Author(s)
      A. Setiawan,橋床泰之.
    • Organizer
      日本農芸化学会年次大会
    • Place of Presentation
      東京
    • Year and Date
      2010-03-29
  • [Presentation] Pseudomonas sp.のスウォーミングはゲルマトリックスに支配されるか?2010

    • Author(s)
      原新太郎,橋床泰之
    • Organizer
      日本農芸化学会年次大会
    • Place of Presentation
      東京
    • Year and Date
      2010-03-29
  • [Presentation] A rice rhizoplane fungus as a biocontrol agent against rice seedling blight causative Burkholderia plantarii via its bioactive secondary metabolites2010

    • Author(s)
      Mengcen Wang, Yasuyuki Hashidoko
    • Organizer
      第37回日本農薬学会大会
    • Place of Presentation
      岡山,岡山大学津島キャンパス
    • Year and Date
      2010-03-15
  • [Presentation] Screening of N20-emitting bacteria from tropical peat soils and their characteristics under acidic conditions2009

    • Author(s)
      Y. Hashidoko, H. Takeda, S. Hasegawa, S. Hara, H. C. Wijaya, U. Darung, L. Melling, R. Hatano
    • Organizer
      Bogor Symposium and Workshop on Tropical Peatland Management
    • Place of Presentation
      Bogor, Indonesia
    • Year and Date
      20090714-15
  • [Presentation] Screening of N20-emitting bacteria from acidic soils and their characteristics under acidic conditions2009

    • Author(s)
      Y. Hashidoko, H. Takeda, S. Hasegawa, S. Hara, H. C. Wijaya, U. Darung, L. Melling, R. Hatano
    • Organizer
      The 9th International Conference of The East and Southeast Asia Federation of Soil Science Societies (ESAFS9)
    • Place of Presentation
      01ympic Memorial Hole, Seoul, Korea
    • Year and Date
      2009-10-27
  • [Presentation] Peroxynitrite scavenging activity of betalains isolated from beetroot and its reaction products2009

    • Author(s)
      M. Maeda, Y. Sakihama, Y. Hashidoko
    • Organizer
      Plant Biology
    • Place of Presentation
      Honolulu, Hawaii
    • Year and Date
      2009-07-20
  • [Presentation] Preliminary structure determination of water insoluble polysaccharide extracted from soil bacteria2009

    • Author(s)
      J. Wongchawalit, Y. Hashidoko, M. Okuyama, H. Mori, S. Chiba, A. Kimura
    • Organizer
      8th Carbohydrate Bioengineering Meeting
    • Place of Presentation
      Naples, Italy
    • Year and Date
      2009-05-12
  • [Book] 植物機能のポテンシャルを活かした環境保全・浄化技術2011

    • Author(s)
      橋床泰之
    • Total Pages
      261
    • Publisher
      シーエムシー出版
  • [Book] 生態学入門生態系を理解する2010

    • Author(s)
      原口昭(編著),橋床泰之,上田直子,河野知謙(著)
    • Total Pages
      1-138
    • Publisher
      生物研究社
  • [Book] Tropics in Tropical Peatland 2011-Summer School Edition-

    • Author(s)
      Y. Hashidoko
    • Total Pages
      261
    • Publisher
      IFES-GCOE Liaison Office

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Published: 2013-07-31   Modified: 2017-10-13  

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