• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to project page

2010 Fiscal Year Final Research Report

Designing similarity measures for discrete data structures, and their applications to machine learning

Research Project

  • PDF
Project/Area Number 20500126
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Intelligent informatics
Research InstitutionGakushuin University

Principal Investigator

KUBOYAMA Tetsuji  Gakushuin University, 計算機センター, 准教授 (80302660)

Project Period (FY) 2008 – 2010
Keywords機械学習 / 類以度 / 木構造 / カーネル法
Research Abstract

The similarity measures called kernel functions for discrete data structures such as strings, trees, and graphs allow for statistical analysis and machine learning for non-numerical variables. In this study, a novel and general framework for designing kernel functions for discrete data structures has been developed. The framework is a generalization of Haussler's convolution kernel by counting all possible structural correspondences between two structures. Moreover, a diversity of similarity measures for trees have been developed based on counting their common substructures.

  • Research Products

    (26 results)

All 2011 2010 2009 2008

All Journal Article (17 results) Presentation (9 results)

  • [Journal Article] Discovering Global Propagation for Influenza A Viruses Based on Robinson-Foulds Distance between Phylogenetic Trees, Proc2011

    • Author(s)
      Sata, K., Hirata, K., Ito, K., Kuboyama T.
    • Journal Title

      Annual International Conference on BioInformatics and Computational Biology (BICB)

      Pages: B12-B17

  • [Journal Article] Learnig of Multiple Tree Structured Patterns Using Clustering and Evolution, Proc2011

    • Author(s)
      Otsuka, Y., Miyahara, T., Kuboyama T.
    • Journal Title

      IADIS International Conference Information Systems

      Pages: 227-231

  • [Journal Article] A Bottom-Up Edit Distance between Rooted Labeled Trees, Proc2011

    • Author(s)
      Yamamoto, Y., Hirata, K., Kuboyama T.
    • Journal Title

      7th Workshop on Learning with Logics and Logics for Learning (LLLL)

      Pages: 26-33

  • [Journal Article] Broom Distance between Rooted Labeled Trees, Proc2011

    • Author(s)
      Kuboyama T., Hirata, K.
    • Journal Title

      7th Workshop on Learning with Logics and Logics for Learning (LLLL)

      Pages: 34-41

  • [Journal Article] Evolution of Multiple Tree Structured Patterns using Soft Clustering, Proc2010

    • Author(s)
      Yoshida, K., Miyahara, T., Kuboyama T.
    • Journal Title

      2nd International Conference on Computer and Automation Engineering (ICCAE) Vol.5

      Pages: 749-753

  • [Journal Article] Approximating Tree Edit Distance through String Edit Distance for Binary Tree Codes2010

    • Author(s)
      Aratsu, T., Hirata, K., Kuboyama T.
    • Journal Title

      Fundamenta Informaticae Vol.101(3)

      Pages: 157-171

  • [Journal Article] A Generalization of Haussler's Convolution Kernel-Mapping Kernel and Its Application to Tree Kernels2010

    • Author(s)
      申吉浩, 久保山哲二
    • Journal Title

      Journal of Computer Science and Technology Vol.25(5)

      Pages: 1040-1054

  • [Journal Article] Extracting Research Communities by Improved Maximum Flow Algorithm, Knowledge-Based and Intelligent Information and Engineering Systems2009

    • Author(s)
      Horiike, T., Takahashi, Y., Kuboyama T., Sakamoto, H.
    • Journal Title

      13th International Conference (KES) LNCS 5712

      Pages: 472-479

  • [Journal Article] Approximating Tree Edit Distance through String Edit Distance for Binary Tree Codes, SOFSEM 2009 : Theory and Practice of Computer Science2009

    • Author(s)
      Aratsu, T., Hirata, K., Kuboyama T.
    • Journal Title

      35th Conference on Current Trends in Theory and Practice of Computer Science LNCS 5404

      Pages: 93-104

  • [Journal Article] Discovering Networks for Global Propagation of Influenza A (H3N2) Viruses by Clustering, Knowledge-Based and Intelligent Information and Engineering Systems2009

    • Author(s)
      Sata, K., Hirata, K., Ito, K., Kuboyama T.
    • Journal Title

      13th International Conference (KES) LNCS 5712

      Pages: 490-497

  • [Journal Article] Polynomial summaries of positive semidefinite kernels2009

    • Author(s)
      申吉浩, 久保山哲二
    • Journal Title

      Theoretical Compututer Science Vol.410(19)

      Pages: 1847-1862

  • [Journal Article] Haussler畳み込みカーネルの一般化と応用:マッピングカーネル2009

    • Author(s)
      申吉浩, 久保山哲二
    • Journal Title

      人工知能学会論文誌, 人工知能学会 Vol.24(2)

      Pages: 263-271

  • [Journal Article] An Efficient Unordered Tree Kernel and Its Application to Glycan Classification, Proc2008

    • Author(s)
      Kuboyama T., Hirata, K., Aoki-Kinoshita, K.F.
    • Journal Title

      12th Pacific-Asia Conference on Advances in Knowledge Discovery and Data Mining (PAKDD) LNCS 5012

      Pages: 184-195

  • [Journal Article] Sibling Distance for Rooted Labeled Trees, New Frontiers in Applied Data Mining2008

    • Author(s)
      Aratsu, T., Hirata, K., Kuboyama T.
    • Journal Title

      PAKDD 2008 International Workshops LNCS 5433

      Pages: 99-110

  • [Journal Article] Evolution of Multiple Tree Structured Patterns from Tree-Structured Data Using Clustering, AI 2008: Advances in Artificial Intelligence2008

    • Author(s)
      Nagamine, M., Miyahara, T., Kuboyama T., Ueda, H., Takahashi, K.
    • Journal Title

      21st Australasian Joint Conference on Artificial Intelligence LNCS 5360

      Pages: 500-511

  • [Journal Article] Kernels Based on Distributions of Agreement Subtrees, AI 2008: Advances in Artificial Intelligence2008

    • Author(s)
      申吉浩, 久保山哲二
    • Journal Title

      21st Australasian Joint Conference on Artificial Intelligence LNCS 5360

      Pages: 236-246

  • [Journal Article] A generalization of Haussler's convolution kernel: mapping kernel, Machine Learning, Proc2008

    • Author(s)
      申吉浩, 久保山哲二
    • Journal Title

      of the 25th International Conference (ICML)

      Pages: 944-951

  • [Presentation] Predicting Mutations of Influenza Virus HA Genes Using Dimensionality Reduction of Hamming Distance Space, Proc2011

    • Author(s)
      久保山哲二, 伊藤公人, 平田耕一, 山本恭之
    • Organizer
      Annual International Conference on BioInformatics and Computational Biology (BICB) pp.B43
    • Place of Presentation
      シンガポール
    • Year and Date
      2011-02-28
  • [Presentation] On MAX SNP-hard results for unordered tree edit distance2010

    • Author(s)
      平田耕一, 山本恭之, 久保山哲二
    • Organizer
      第80回人工知能基本問題研究会 pp.33-38
    • Place of Presentation
      東京
    • Year and Date
      2010-11-17
  • [Presentation] 自由度1及び2の分割自由カーネル2010

    • Author(s)
      申吉浩, 久保山哲二
    • Organizer
      第79回人工知能基本問題研究会 pp.35-39 Vol.79
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-25
  • [Presentation] アミノ酸の高次元符号化によるインフルエンザウイルスの抗原変異予測2010

    • Author(s)
      久保山哲二, 申吉浩, 伊藤公人
    • Organizer
      第78回人工知能基本問題研究会 pp.1-7
    • Place of Presentation
      兵庫県立大学
    • Year and Date
      2010-07-31
  • [Presentation] ハミング距離空間の次元削減によるインフルエンザウイルス遺伝子変異の解析2010

    • Author(s)
      久保山哲二, 伊藤公人
    • Organizer
      第77回人工知能基本問題研究会 pp. 91-95
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-03-17
  • [Presentation] Evolution of multiple tree structured patterns using soft clustering2010

    • Author(s)
      吉田健吾, 宮原哲浩, 久保山哲二
    • Organizer
      第77回人工知能基本問題研究会 pp.49-54
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-03-17
  • [Presentation] 第73回木カーネルの構成のためのフレームワークとサーベイ2009

    • Author(s)
      申吉浩, 久保山哲二
    • Organizer
      人工知能基本問題研究会 pp. 41-48
    • Place of Presentation
      学習院大学
    • Year and Date
      2009-03-14
  • [Presentation] Evolution of multiple tree structured patterns using clustering2009

    • Author(s)
      長嶺将俊, 宮原哲浩, 久保山哲二
    • Organizer
      第73回人工知能基本問題研究会 pp.35-40
    • Place of Presentation
      学習院大学
    • Year and Date
      2009-03-13
  • [Presentation] 二分木符号の文字列編集距離による木の編集距離の近似2008

    • Author(s)
      荒津拓, 平田耕一, 久保山哲二
    • Organizer
      第71回人工知能基本問題研究会 pp.57-62
    • Place of Presentation
      北海道大学
    • Year and Date
      2008-09-17

URL: 

Published: 2012-01-26   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi