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2011 Fiscal Year Final Research Report

Investigation of the folding dynamics of proteins based on the advanced method of single molecule detection

Research Project

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Project/Area Number 21370072
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionTohoku University

Principal Investigator

TAKAHASHI Satoshi  東北大学, 多元物質科学研究所, 教授 (30283641)

Research Collaborator KAMAGATA Kiyoto  東北大学, 多元物質科学研究所, 助教 (90432492)
OIKAWA Hiroyuki  東北大学, 多元物質科学研究所, 教育研究支援者
Project Period (FY) 2009 – 2011
Keywordsフォールディング
Research Abstract

In this project, we first developed spherical mirror system for the detection of fluorescence from single molecules for long periods. Based on the developed system, we successfully determined the energy landscape for cytochrome c. We next developed line conforcal microscopy for the fast time resolved measurements of single molecule fluorescence time series. The method was used to investigate the unfolded state dynamics of the B domain of protein A, and revealed the presence of substates in the unfolded ensemble. Further applications of the developed methods for other protein systems are currently underway.

  • Research Products

    (34 results)

All 2012 2011 2010 2009

All Journal Article (5 results) (of which Peer Reviewed: 3 results) Presentation (26 results) Book (3 results)

  • [Journal Article] Long-Term Observation of Fluorescence of Free SingleMolecules To Explore Protein-Folding Energy Landscapes2012

    • Author(s)
      Kamagata K, Kawaguchi T, Iwahashi Y, Baba A, Fujimoto K, Komatsuzaki T, Sambongi Y, Goto Y, Takahashi S
    • Journal Title

      J. Am. Chem. Soc

      Volume: 134 Pages: 11525-11532

    • Peer Reviewed
  • [Journal Article] Time-Resolved Small-Angle X-ray Scattering Study of the Folding Dynamics of Barnase2011

    • Author(s)
      Tsuyoshi Konuma, Tetsunari Kimura, Shuzo Matsumoto, Yuji Goto, Tetsuro Fujisawa, Alan R.Fersht, Satoshi Takahashi
    • Journal Title

      Journal of Molecular Biology

      Volume: 405 Pages: 1284-1294

    • Peer Reviewed
  • [Journal Article] Staring at a Protein : Ensemble and Single-Molecule Investigations on Protein-Folding Dynamics2011

    • Author(s)
      Satoshi Takahashi, Kiyoto Kamagata
    • Journal Title

      Advances in Chemical Physics

      Volume: 146 Pages: 3-22

    • Peer Reviewed
  • [Journal Article] 一分子蛍光観察法を用いたタンパク質フォールディングの解明2011

    • Author(s)
      小井川浩之、鎌形清人、高橋聡
    • Journal Title

      高分子

      Pages: 801-803

  • [Journal Article] 新しいタンパク質科学の可能性.新時代を切り拓くマルチタレントDavid Baker2011

    • Author(s)
      鎌形清人、高橋聡
    • Journal Title

      化学同人

      Pages: 68-69

  • [Presentation] Folding dynamics of cytochrome c551 studied by long time observation of fluorescence time series from single molecules2012

    • Author(s)
      Toshifumi Kawaguchi, Kiyoto Kamagata, Hiroyuki Oikawa, Yoshihiro Sambongi, Satoshi Takahashi
    • Organizer
      日本化学会第92春季年会
    • Place of Presentation
      横浜
    • Year and Date
      20120325-28
  • [Presentation] Exploring The Energy Landscape of Denatured Protein Using Time-Series Detection of Fluorescence of Free Single Molecules2012

    • Author(s)
      Kiyoto Kamagata, Toshifumi Kawaguchi, Akinori Baba, Yoshihiro Sambongi, Tamiki Komatsuzaki, Satoshi Takahashi
    • Organizer
      International Symposium on Innovative Nanobiodevices ISIN 2012
    • Place of Presentation
      Nagoya
    • Year and Date
      20120321-22
  • [Presentation] See how they run:exploring the energy landscape of protein folding using time-series detection of fluorescence of free single molecules2011

    • Author(s)
      Satoshi Takahashi
    • Organizer
      日本分光学会年会講演会
    • Place of Presentation
      横浜
    • Year and Date
      20111130-1202
  • [Presentation] Additives inhibiting the bleaching of fluorophores for the oong-time fluorescence observation of single proteins2011

    • Author(s)
      Hironao Itabashi, Eriko Mano, Hiroyuki Oikawa, Yasuyuki Araki, Kiyoto Kamagata, Takehiko Wada, Satoshi Takahashi
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      20110916-18
  • [Presentation] Energy landscape of denatured protein revealed by a new singe-molecule fluorescence method2011

    • Author(s)
      Kiyoto Kamagata, Toshifumi Kawaguchi, Akinori Baba, Yoshihiro Sambongi, Tamiki Komatsuzaki, Satoshi Takahashi
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      20110916-18
  • [Presentation] Imaging and tracking of single BLG molecules in solution2011

    • Author(s)
      Sion Ando, Hiroyuki Oikawa, Kiyoto Kamagata, Kazumasa Sakurai, Yuji Goto, Satoshi Takahashi
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      20110916-18
  • [Presentation] Microsecond-resolved time traces of protein conformational change by single-molecule fluorescence detection2011

    • Author(s)
      Hiroyuki Oikawa, Kiyoto Kamagata, Issei Iijima, Takahiro Hohsaka, Yoshihiro Sambongi, Satoshi Takahashi
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      20110916-18
  • [Presentation] Submillisecond dynamics of protein folding and ligand binding detected by the line conforcal microscopy2011

    • Author(s)
      Hiroyuki Oikawa, Kiyoto Kamagata, Issei Iijima, Takahiro Hosaka, Yoshihiro Sambongi, Satoshi Takahashi
    • Organizer
      第49回日本生物物理学会年会
    • Place of Presentation
      姫路
    • Year and Date
      20110916-18
  • [Presentation] Exploration of energy landscape of protein folding using a novel single-molecule fluorescence method2011

    • Author(s)
      Kiyoto Kamagata
    • Organizer
      The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      USA, Telluride
    • Year and Date
      20110620-24
  • [Presentation] 新規一分子蛍光観測法による蛋白質の自由エネルギー地形の解析2011

    • Author(s)
      鎌形清人, 川口敏史, 馬場昭典, 三本木至宏, 小松崎民樹, 高橋聡
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      大阪
    • Year and Date
      20110607-09
  • [Presentation] マイクロ秒分解一分子蛍光検出による蛋白質構造変化の追跡2011

    • Author(s)
      小井川浩之, 鎌形清人, 飯島一生, 芳坂貴弘, 高橋聡
    • Organizer
      第11回日本蛋白質科学会年会
    • Place of Presentation
      大阪
    • Year and Date
      20110607-09
  • [Presentation] Single molecule and ensemble investigations of protein folding dynamics in the time domain from 30 μs to seconds2011

    • Author(s)
      Satoshi Takahashi
    • Organizer
      The 16th Biophysics Conference
    • Place of Presentation
      National Dong Hwa University, Taiwan
    • Year and Date
      20110518-21
  • [Presentation] Flow and Stop Protocol for the Long-Time Observation of Fluorescence from Single Molecules: Application to the Time-Series Analysis of Protein Folding2011

    • Author(s)
      Kiyoto Kamagata, Akinori Baba, Tamiki Komatsuzaki, Satoshi Tkahashi
    • Organizer
      55th Annual Meeting Biophysical Society
    • Place of Presentation
      USA, Maryland
    • Year and Date
      20110305-09
  • [Presentation] 一分子蛍光検出による蛋白質折り畳みのマイクロ秒分解時間追跡2010

    • Author(s)
      小井川浩之, 鎌形清人, 高橋聡
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      日本,仙台
    • Year and Date
      2010-09-20
  • [Presentation] Single Molecule Investigation of the Denatured State Dynamics of Cytochrome c in the Time Domain form 100μs to 1S2010

    • Author(s)
      Satoshi Takahashi, Hiroyuki Oikawa and Kiyoto Kamagata
    • Organizer
      The 24th Annual Symposium of The Protein Society
    • Place of Presentation
      USA ,San diego
    • Year and Date
      2010-08-05
  • [Presentation] Single Molecule Investigation of the Denatured State Dynamics of Cytochrome c in the Time Domain from 10μs to 1s2010

    • Author(s)
      Satoshi Takahashi
    • Organizer
      Indo-Japan Joint Workshop on New Frontiers of Molecular Spectroscopy from Gas Phase to Proteins
    • Place of Presentation
      日本,神戸
    • Year and Date
      2010-06-26
  • [Presentation] 蛋白質フォールディングの実験的研究:単純な速度論に潜む複雑性を検出できるか?2010

    • Author(s)
      高橋聡
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      日本,札幌
    • Year and Date
      2010-06-16
  • [Presentation] キャピラリー内トラップによる一分子長時間測定法の開発:蛋白質の折り畳みへの応用2010

    • Author(s)
      鎌形清人, 高橋聡
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      日本,札幌
    • Year and Date
      2010-06-16
  • [Presentation] Long-time observation of a single molecule trapped in a capillary cell: application for protein folding2010

    • Author(s)
      Kiyoto Kamagata, Satoshi Takahashi
    • Organizer
      Gordon Research Conference Protein Folding Dynamics
    • Place of Presentation
      USA,Ventura
    • Year and Date
      2010-01-10
  • [Presentation] キャピラリー内トラップによる一分子の長時間観察:蛋白質の折り畳みへの応用2009

    • Author(s)
      鎌形清人、後藤祐児、高橋聡
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      20091030-1101
  • [Presentation] 一分子測定法による乳性蛋白質βーラクトグロブリンの折り畳み過程の観測2009

    • Author(s)
      門脇喬之, 鎌形清人, 小井川浩之, 櫻井一正, 後藤祐児, 高橋聡
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      20091030-1101
  • [Presentation] ライン共焦点顕微鏡による蛋白質折り畳みのマイクロ秒分解一分子追跡2009

    • Author(s)
      小井川浩之, 鎌形清人, 後藤祐児, 高橋聡
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      20091030-1101
  • [Presentation] 二重標識したマルトース結合蛋白質の基質結合と折りたたみの一分子観測2009

    • Author(s)
      山森明弘, 鎌形清人, 飯島一生, 芳坂貴弘, 後藤祐児, 高橋聡
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      20091030-1101
  • [Presentation] STARING AT A PROTEIN Single-Molecule and Ensemble Investigations of Protein Folding Dynamics2009

    • Author(s)
      Satoshi Takahashi
    • Organizer
      The Complexity of Dynamics and Kinetics in Many Dimensions
    • Place of Presentation
      Colorado,USA
    • Year and Date
      20090629-0703
  • [Presentation] マイクロ秒時間分解一分子追跡による蛋白質折り畳み運動の観測2009

    • Author(s)
      小井川浩之,鎌形清人,高橋聡
    • Organizer
      第36回生体分子科学討論会
    • Place of Presentation
      札幌
    • Year and Date
      20090619-20
  • [Presentation] キャピラリー内トラップによる一分子長時間観測:蛋白質の折り畳みへの応用2009

    • Author(s)
      鎌形清人,後藤祐児,高橋聡
    • Organizer
      第9回蛋白質科学会
    • Place of Presentation
      熊本
    • Year and Date
      20090520-22
  • [Book] Protein Folding and Misfolding Shining Light by Infrared Spectroscpy, Watching Dynamical Events in Protein Folding in the Time Domain from Submilliseconds to Seconds : Continuous-Flow Rapid-Mixing Infrared Spectroscopy2011

    • Author(s)
      Satoshi Takahashi, Tetsunari Kimura
    • Total Pages
      91-115
    • Publisher
      springer
  • [Book] タンパク質の立体構造入門:基礎から構造バイオインフォマティクスへ、タンパク質の変性とフォールディング、タンパク質のフォールディング問題2010

    • Author(s)
      高橋聡
    • Total Pages
      18-24,37-46
    • Publisher
      講談社
  • [Book] タンパク質のはたらきを知る一分子機能と生体作用、「蛋白質の可視化とダイナミズム○1:in vitro系での研究」2009

    • Author(s)
      高橋聡
    • Total Pages
      53-66
    • Publisher
      化学同人

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Published: 2015-03-12  

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