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2011 Fiscal Year Final Research Report

Studies by molecular biological methods on proton pumping mechanisms of bovine heart and bacterial cytochrome c oxidases

Research Project

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Project/Area Number 21370073
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionUniversity of Hyogo

Principal Investigator

SHIMADA Hideo  兵庫県立大学, 大学院・生命理学研究科, 教授 (80095611)

Co-Investigator(Renkei-kenkyūsha) KATAYAMA Yukie  兵庫県立大学, 大学院・生命理学研究科, 特任講師 (70464998)
AMINAKA Ryohta  兵庫県立大学, 大学院・生命理学研究科, 特任助教
Project Period (FY) 2009 – 2011
Keywordsタンパク質 / 核酸の構造 / 動態 / 機能
Research Abstract

Function of a putative proton transfer pathway, D-pathway of bovine heart cytochrome c oxidase (CcO) was analyzed by site-directed mutagenesis employing HeLa cell expression system we have developed to produce bovine/human hybrid CcO. Corresponding bacterial pathway has been proposed to convey pumping and water-forming protons, which is supported by mutagenesis. Our analyses did not support the proton pumping function. Study on proton transfer mechanism of proteins by vibrational spectroscopy requires site-specific isotope labeling of proteins, which can be achieved by cell-free protein synthesis. We have successfully developed a E. coli cell free system to produce normal bacterial CcO.

  • Research Products

    (23 results)

All 2012 2011 2010 2009

All Journal Article (6 results) (of which Peer Reviewed: 1 results) Presentation (17 results)

  • [Journal Article] Characterization by mutagenesis analysis of putative proton transfer pathway, D-pathway of bovine heart cytochrome c oxidase2012

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Journal Title

      生物物理

      Volume: 151 Pages: S31

  • [Journal Article] Mutagenesis analyses of D-pathway of bovine heart cytochrome c oxidase suggest that the pathway does not transfer the pumping protons2012

    • Author(s)
      Ryohta Aminaka, Mai Itoh, Kunitoshi Shimokata, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Journal Title

      Biochim Biophys Acta

      Volume: 1817 Pages: 93-93

  • [Journal Article] Cell-free synthesis of cytochrome c oxidase, a multicomponent membrane protein2010

    • Author(s)
      Yukie Katayama, Kunitoshi Shimokata, Makoto Suematsu, Takashi Ogura, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Journal Title

      J . Bioenerg. Biomembr

      Volume: 42 Pages: 235-240

    • Peer Reviewed
  • [Journal Article] Mutagenesis studies on D-pathway function of bovine heart cytochrome c oxidase2010

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Journal Title

      Biochimica Biophysica Acta

      Volume: 1797 Pages: 93-94

  • [Journal Article] Mutagenesis studies on the functional roles of possible proton transfer pathways in bovine heart cytochrome c oxidase2009

    • Author(s)
      Hideo Shimada
    • Journal Title

      J. Biol. Inorg. Chem

      Volume: 14(Suppl 1) Pages: S12

  • [Journal Article] Structure and dynamics of cytochrome c oxidase as studies with resonance Raman spectroscopy2009

    • Author(s)
      Takashi Ogura
    • Volume
      14(Suppl 1)
    • Pages
      S13
  • [Presentation] Characterization by mutagenesis analysis of putative proton transfer pathway, D-pathway of bovine heart cytochrome c oxidase2012

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第50回日本生物物理学会
    • Place of Presentation
      名古屋
    • Year and Date
      20120900
  • [Presentation] Mutagenesis analyses of D-pathway of bovine heart cytochrome c oxidase suggest that the pathway does not transfer the pumping protons2012

    • Author(s)
      Ryohta Aminaka, Mai Itoh, Kunitoshi Shimokata, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      17th European Bioenergetics Conference
    • Place of Presentation
      Freiberg, Germany
    • Year and Date
      20120900
  • [Presentation] ウシ心筋チトクロムc 酸化酵素のプロトン輸送経路の変異体解析2011

    • Author(s)
      網中良太、下方国稔、伊藤真衣、片山幸江、月原冨武、吉川信也、島田秀夫
    • Organizer
      第37回日本生体エネルギー研究会
    • Place of Presentation
      京都
    • Year and Date
      20111200
  • [Presentation] Development of a Paracoccus denitorificans cell-free protein synthesis system2011

    • Author(s)
      Yukie Katayama, Mai Itoh, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第49回日本生物物理学会
    • Place of Presentation
      姫路
    • Year and Date
      20110900
  • [Presentation] Mutagenesis analysis of proton transport pathway suggested by X-ray structure of bovine heart cytochrome c oxidase2011

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第49回日本生物物理学会
    • Place of Presentation
      姫路 (一般発表と招待講演)
    • Year and Date
      20110900
  • [Presentation] Diversity in proton pumping mechanisms of the terminal oxidases, in symposium " Structural Features and Molecular Evolution of Bioenergetic Enzymes2011

    • Author(s)
      Hideo Shimada, and Shinya Yoshikawa
    • Organizer
      第49回日本生物物理学会
    • Place of Presentation
      姫路 (招待講演)
    • Year and Date
      20110900
  • [Presentation] Proton pumping pathway of bovine heart cytochrome c oxidase2010

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Ito, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      仙台
    • Year and Date
      20100900
  • [Presentation] Characterization of histidine-tagged cytochrome P450cam and its synthesis in a cell-free system2010

    • Author(s)
      Yukie Katayama, Miyuki Yoshiya, Keisuke Sakurai and Hideo Shimada
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      仙台
    • Year and Date
      20100900
  • [Presentation] Mutagenesis studies on the functional mechanism of cytochrome c oxidase and cytochrome P450cam2010

    • Author(s)
      Hideo Shimada
    • Organizer
      第48回日本生物物理学会
    • Place of Presentation
      仙台 (招待講演)
    • Year and Date
      20100900
  • [Presentation] Mutagenesis studies on D-pathway function of bovine heart cytochrome c oxidase2010

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      16th European Bioenergetics Conference
    • Place of Presentation
      Warsaw Poland
    • Year and Date
      20100700
  • [Presentation] ウシ心筋チトクロムc 酸化酵素のX 線構造が示唆する水形成用プロトン輸送系の機能解析2009

    • Author(s)
      網中良太、下方国稔、伊藤真衣、片山幸江、月原冨武、吉川信也、島田秀夫
    • Organizer
      第6回「生体超分子の構造形成と機能制御の原子機構」公開シンポジュウム大阪
    • Place of Presentation
      大阪
    • Year and Date
      20091200
  • [Presentation] 細菌チトクロムc 酸化酵素の変異体解析が支持するプロトンポンプ経路の変異に対応したウシ心筋酵素部位の変異体解析2009

    • Author(s)
      網中良太、下方国稔、伊藤真衣、片山幸江、月原冨武、吉川信也、島田秀夫
    • Organizer
      生体エネルギー研究会第35回討論会
    • Place of Presentation
      旭川
    • Year and Date
      20091200
  • [Presentation] Site-directed isotope labeling of cytochrome c oxidase2009

    • Author(s)
      Hideo Shimada, Yukie Katayama, Takashi Ogura, Tomitake Tsukihara, Shinya Yoshikawa
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      徳島 (招待講演)
    • Year and Date
      20091100
  • [Presentation] Synthesis of Paracoccus denitrificans cytochrome c oxidase in the E. coli cell-free system2009

    • Author(s)
      Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      徳島
    • Year and Date
      20091100
  • [Presentation] The functional analysis of hydrogen bond network in bovine heart cytochrome c oxidase by mutagenesism2009

    • Author(s)
      Ryohta Aminaka, Kunitoshi Shimokata, Mai Itoh, Yukie Katayama, Tomitake Tsukihara, Shinya Yoshikawa, and Hideo Shimada
    • Organizer
      第47回日本生物物理学会
    • Place of Presentation
      徳島
    • Year and Date
      20091100
  • [Presentation] ウシ(サブユニットI)/ヒト雑種チトクロムc 酸化酵素のHeLa 細胞発現系:ミトコンドリアにおけるミトコンドリアおよび核由来タンパク質の発現誘導2009

    • Author(s)
      下方国稔、網中良太、末松 誠、月原富武、吉川信也、島田秀夫
    • Organizer
      第82回日本生化学会
    • Place of Presentation
      神戸
    • Year and Date
      20091000
  • [Presentation] Mutagenesis Studies on the Functional Roles of Possible Proton Transfer Pathways in Bovine Heart Cytochrome c Oxidase2009

    • Author(s)
      Hideo Shimada, Kunitoshi Shimokata, Ryohta Aminaka, Yukie Katayama, Kazumasa Muramoto, Tomitake Tsukihara, Shinya Yoshikawa
    • Organizer
      14th International Conference in Biological Inorganic Chemistry
    • Place of Presentation
      Nagoya, Japan (Invited)
    • Year and Date
      20090700

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Published: 2015-03-12  

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