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2013 Fiscal Year Final Research Report

Development of the technology to activate actinomycete silent genes

Research Project

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Project/Area Number 22380055
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionHiroshima Institute of Technology

Principal Investigator

OCHI Kozo  広島工業大学, その他部局等, 教授 (70353985)

Project Period (FY) 2010-04-01 – 2014-03-31
Keywords微生物遺伝・育種 / 休眠遺伝子 / 放線菌 / RNAポリメラーゼ
Research Abstract

1. [Utilization of the mutant-type RNAP gene (rpoB)] A variety of rifampicin-resistant mutants with mutated rpoB gene were obtained from eight actinomycete strains. These rpoB mutants displayed an enhanced activity to produce antibiotics and were found to be activated even in the silent genes, which encodes enzymes involved in secondary metabolite production. 2. [Utilization of natural mutant-type RNAP gene] By selecting for rifampicin resistance, many strains (more than 1000) with natural mutant-type rpoB were successfully isolated and characterized on antibiotic productivity. 3. [Utilization of rare earth elements] Rare earth elements such as scandium and lanthanum were found not only to enhance the productivity of antibiotics but to activate silent genes. Scandium-resistance mutation in Bacillus subtilis was found to occur in the uppS gene.

  • Research Products

    (35 results)

All 2014 2013 2012 2011 2010

All Journal Article (17 results) (of which Peer Reviewed: 17 results) Presentation (18 results) (of which Invited: 2 results)

  • [Journal Article] The mthA mutation conferring low-level resistance to streptomycin enhances antibiotic production in Bacillus subtilis by increasing the S-adenosylmethionine pool size2014

    • Author(s)
      Tojo S, Kim JY, Tanaka Y, Inaoka T, Hiraga Y, Ochi K.
    • Journal Title

      J Bacteriol

      Volume: 196 Pages: 1514-1524

    • DOI

      10.1128/JB.01441-13

    • Peer Reviewed
  • [Journal Article] Activating the expression of bacterial cryptic genes by rpoB mutations in RNA polymerase or by rare earth elements2014

    • Author(s)
      Ochi K, Tanaka Y, Tojo S
    • Journal Title

      J Ind Microbiol Biotechnol

      Volume: 41 Pages: 403-414

    • DOI

      10.1007/s10295-013-1349-4

    • Peer Reviewed
  • [Journal Article] Chromosomal circularization of the model Streptomyces species2013

    • Author(s)
      Nindita Y, Nishikawa T, Arakawa K, Wang G, Ochi K, Qin Z, Kinashi H
    • Journal Title

      Streptomyces coelicolor A3(2). FEMS Microbiol Lett

    • DOI

      10.1111/1574-6968.12228

    • Peer Reviewed
  • [Journal Article] Structure and biosynthesis of scabichelin a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.222013

    • Author(s)
      Kodani S, Bicz J, Song L, Deeth RJ, Ohnishi-kameyama M, Yoshida M, Ochi K, Challis GL
    • Journal Title

      Org Biomol Chem

      Volume: 11 Pages: 4686-4694

    • DOI

      10.1039/c3ob40536b

    • Peer Reviewed
  • [Journal Article] Activation and products of the cryptic secondary metabolite biosynthetic gene clusters by rifampin resistance (rpoB) mutations in actinomycetes2013

    • Author(s)
      Tanaka Y, Kasahara K, Hirose Y, Murakami K, Kugimiya R, Ochi K
    • Journal Title

      J Bacteriol

      Volume: 195 Pages: 2959-2970

    • DOI

      10.1128/JB.00147-13

    • Peer Reviewed
  • [Journal Article] rRNA (rrn)operon-engineered Bacillus subtilis as a feasible test organism for antibiotic discovery2013

    • Author(s)
      Tanaka Y, Nanamiya H, Yano K, Kakugawa K, Kawamura F, Ochi K
    • Journal Title

      Antimicrob Agents Chemother

      Volume: 57 Pages: 1948-1951

    • DOI

      10.1128/AAC.02604-12

    • Peer Reviewed
  • [Journal Article] New strategies for drug discovery : activation of silent or weakly expressed microbial gene clusters2013

    • Author(s)
      Ochi K, Hosaka T
    • Journal Title

      Appl Microbiol Biotechnol

      Volume: 97 Pages: 87-98

    • DOI

      10.1007/s00253-012-4551-9

    • Peer Reviewed
  • [Journal Article] Crystal structure analysis of the translation factor RF3 (release factor 3)2012

    • Author(s)
      Kihira K, Shimizu Y, Shomura Y, Shibata N, Kitamura M, Nakagawa A, Ueda T, Ochi K, Higuchi Y
    • Journal Title

      FEBS Lett

      Volume: 586 Pages: 3705-3709

    • DOI

      10.1016/j.febslet.2012.08.029

    • Peer Reviewed
  • [Journal Article] A magic bullet for antibiotic discovery2012

    • Author(s)
      Ochi K, Okamoto S
    • Journal Title

      Chem Biol

      Volume: 19 Pages: 932-934

    • DOI

      10.1016/j.chembiol.2012.08.001

    • Peer Reviewed
  • [Journal Article] Undecaprenyl pyrophosphate involvement in susceptibility of Bacillus subtilis to rare earth elements2012

    • Author(s)
      Inaoka T, Ochi K
    • Journal Title

      J Bacteriol

      Volume: 194 Pages: 5632-5637

    • Peer Reviewed
  • [Journal Article] Heterologous expression of a plant RelA-SpoT homologue results in increased stress tolerance in Saccharomyces cerevisiae by accumulation of the bacterial alarmone ppGpp2012

    • Author(s)
      Ochi K, Nishizawa T, Inaoka T, Yamada A, Hashimoto K, Hosaka T, Okamoto S, Ozeki Y
    • Journal Title

      Microbiology

      Volume: 158 Pages: 2213-2224

    • DOI

      10.1099/mic.0.057638-0

    • Peer Reviewed
  • [Journal Article] Development of the ability to produce secondary metabolites in Streptomyces through the acquisition of erythromycin resistance2012

    • Author(s)
      Imai Y, Fujiwara T, Ochi K, Hosaka T
    • Journal Title

      J Antibiot

      Volume: 65 Pages: 323-326

    • DOI

      10.1038/ja.2012.16

    • Peer Reviewed
  • [Journal Article] Scandium stimulates the production of amylase and bacilysin in Bacillus subtilis2011

    • Author(s)
      Inaoka T, Ochi K
    • Journal Title

      Appl Environ Microbiol

      Volume: 77 Pages: 8181-8183

    • DOI

      10.1128/AEM.06205-11

    • Peer Reviewed
  • [Journal Article] Activation of dormant secondary metabolism neotrehalosadiamine synthesis by an RNA polymerase mutation in Bacillus subtilis2011

    • Author(s)
      Inaoka T, Ochi K
    • Journal Title

      Biosci Biotechnol Biochem

      Volume: 75 Pages: 618-623

    • Peer Reviewed
  • [Journal Article] Rare earth elements activate the secondary metabolite-biosynthetic gene clusters in Streptomyces coelicolor A3(2)2010

    • Author(s)
      Tanaka Y, Hosaka T, Ochi K
    • Journal Title

      J Antibiot

      Volume: 63 Pages: 477-481

    • DOI

      10.1038/ja.2010.53

    • Peer Reviewed
  • [Journal Article] The G243D mutation (afsB mutation) in the principal sigma factor sigmaHrdB alters intracellular ppGpp level and antibiotic production in Streptomyces coelicolor A3(2)2010

    • Author(s)
      Wang G, Tanaka Y, Ochi K
    • Journal Title

      Microbiology

      Volume: 156 Pages: 2384-2392

    • DOI

      10.1099/mic.0.039834-0

    • Peer Reviewed
  • [Journal Article] Production improvement of antifungal, antitrypanosomal nucleoside sinefungin by rpoB mutation and optimization of resting cell system of Streptomyces incarnatus NRRL 80892010

    • Author(s)
      Fukuda K, Tamura T, Ito H, Yamamoto S, Ochi K, Inagaki K
    • Journal Title

      J Biosci Bioeng

      Volume: 109 Pages: 459-465

    • DOI

      10.1016/j.jbiosc.2009.10.017

    • Peer Reviewed
  • [Presentation] ハイグロマイシンBの活用による紅麹菌の潜在的二次代謝活性化2014

    • Author(s)
      水上智也, 越智幸三, 保坂毅
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東京・明治大学生田キャンパス
    • Year and Date
      2014-03-29
  • [Presentation] リンコマイシンによるStreptomyces 属放線菌の潜在的抗生物質生産能の活性化2014

    • Author(s)
      今井優, 佐藤誠造, 田中幸徳, 越智幸三保坂毅
    • Organizer
      日本農芸化学会
    • Place of Presentation
      日本農芸化学会
    • Year and Date
      2014-03-28
  • [Presentation] Streptomyces 属放線菌の潜在的抗生物質生産能力を引き出すエリスロマイシン耐性変異の特定と機能解析2013

    • Author(s)
      今井優, 綾木啓太, 渡邊健, 越智幸三, 保坂毅
    • Organizer
      日本農芸化学会
    • Place of Presentation
      東北大学
    • Year and Date
      20130325-27
  • [Presentation] 休眠遺伝子覚醒技術の構築とその活用2013

    • Author(s)
      越智幸三
    • Organizer
      バイオインダストリー協会「育種の最前線」
    • Place of Presentation
      メルパルク広島
    • Year and Date
      2013-12-07
    • Invited
  • [Presentation] 抗生物質生産能力が向上したStreptomyces coelicolor A3(2) のrpsLK88E 変異株におけるシグマ因子遺伝子の発現プロファイル解析2013

    • Author(s)
      藤澤知弘, 岩川千紘, 越智幸三, 保坂毅
    • Organizer
      日本放線菌学会
    • Place of Presentation
      メルパルク広島
    • Year and Date
      2013-09-06
  • [Presentation] 亜致死濃度のリンコマイシンが放線菌の二次代謝に及ぼす影響2013

    • Author(s)
      今井優, 越智幸三, 保坂毅
    • Organizer
      日本放線菌学会
    • Place of Presentation
      メルパルク広島
    • Year and Date
      2013-09-05
  • [Presentation] rRNA(rrn)オペロン改変枯草菌を被検菌とした新規RNA ポリメラーゼ攻撃性抗生物質探索法の開発2013

    • Author(s)
      田中幸徳, 河村富士夫, 越智幸三
    • Organizer
      日本放線菌学会
    • Place of Presentation
      日本放線菌学会
    • Year and Date
      2013-09-05
  • [Presentation] 休眠遺伝子とその活用2013

    • Author(s)
      越智幸三
    • Organizer
      韓国農芸化学会
    • Place of Presentation
      韓国プサン
    • Year and Date
      2013-06-26
  • [Presentation] Activation of silent genes in bacteria2013

    • Author(s)
      越智幸三
    • Organizer
      米国化学会
    • Place of Presentation
      アメリカ・ニューオリンズ
    • Year and Date
      2013-04-08
    • Invited
  • [Presentation] Streptomyces coelicolor A3(2)の抗生物質高生産rpsLK88E 変異株の定常期高翻訳活性を担う因子群の包括的解析2012

    • Author(s)
      岩川千紘, 越智幸三, 保坂毅
    • Organizer
      日本放線菌学会大会
    • Place of Presentation
      府中市府中の森芸術劇場
    • Year and Date
      20120906-07
  • [Presentation] 抗生物質抗生産をひきおこす「リンコマイシン耐性変異」の同定と解析2012

    • Author(s)
      王国君 田中幸徳 保坂毅 越智幸三
    • Organizer
      日本放線菌学会大会
    • Place of Presentation
      府中市府中の森芸術劇場
    • Year and Date
      20120906-07
  • [Presentation] リファンピシン耐性(rpoB)変異の導入による各種放線菌の"休眠遺伝子"活性化と二次代謝産物の分析2012

    • Author(s)
      田中幸徳, 廣瀬由鷹, 釘宮理恵, 笠原堅,越智幸三
    • Organizer
      日本放線菌学会大会
    • Place of Presentation
      府中市府中の森芸術劇場
    • Year and Date
      20120906-07
  • [Presentation] Streptomyces 属放線菌の潜在的抗生物質生産能力を引き出すエリスロマイシン耐性変異の同定と特性解析2012

    • Author(s)
      今井優, 渡邊健, 綾木啓太, 越智幸三, 保坂毅
    • Organizer
      日本放線菌学会大会
    • Place of Presentation
      府中市府中の森芸術劇場
    • Year and Date
      2012-09-07
  • [Presentation] リボゾーム攻撃性薬剤を利用した紅麹菌の潜在的色素生産力の劇的活性化2012

    • Author(s)
      水上智也, 越智幸三, 保坂毅
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-24
  • [Presentation] リファンピシン耐性付与による放線菌の抗生物質生産性の増加と二次代謝の活性化に関する研究2012

    • Author(s)
      田中幸徳, 越智幸三
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-23
  • [Presentation] 放線菌の抗生物質高生産rpsL(S12)変異株の定常期に存在する翻訳活性化因子の解析2012

    • Author(s)
      岩川千紘, 今井優, 渡邊健, 越智幸三,保坂毅
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-23
  • [Presentation] Streptomyces sp.631689 の抗生物質高生産ゲンタミシン耐性変異株におけるリボゾームの特性解析2011

    • Author(s)
      保坂毅, 藤原達也, 今井優, 越智幸三
    • Organizer
      日本放線菌学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2011-09-08
  • [Presentation] Streptomyces lividans の潜在的な抗生物質生産力の顕在化に及ぼすエリストロマイシン耐性変異の効果2011

    • Author(s)
      今井優, 藤原達也, 越智幸三, 保坂毅
    • Organizer
      日本放線菌学会
    • Place of Presentation
      札幌コンベンションセンター
    • Year and Date
      2011-09-08

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Published: 2015-06-25  

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