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2012 Fiscal Year Final Research Report

Mechanism of substrate recognition by cytochrome p450s and application to in silico prediction system of metabolites of drug candidates

Research Project

  • PDF
Project/Area Number 22510229
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Living organism molecular science
Research InstitutionKyoto University

Principal Investigator

AKAMATSU Miki  京都大学, 大学院・農学研究科, 准教授 (70183134)

Co-Investigator(Kenkyū-buntansha) SAKAKI Toshiyuki  富山県立大学, 工学部, 教授 (70293909)
IKUSHIRO Shinichi  富山県立大学, 工学部, 准教授 (50244679)
Project Period (FY) 2010 – 2012
Keywords代謝酵素 / CYP / ケミカルゲノミクス / 基質認識 / 代謝物予測システム / 構造活性相関
Research Abstract

To clarify the substrate recognition mechanism, we identified the metabolite structures of an insecticide, tebufenozide, as a model compound, and other compounds by major human CYP isozymes: CYP3A4, 2C19, 1A2, 2C9, 2D6 and 2E1, which are used as indicators of drug development. Then, docking simulation and hydrogen-abstraction energy calculation have been carried out to predict metabolites of the compounds. It was clarified that these methods were useful for the in silico prediction system of drug candidates.

  • Research Products

    (15 results)

All 2012 2011 2010 Other

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] Human cytochrome P450-dependent differential metabolism among three 2α-substituted-1α,25-dihydroxyvitamin D(3) analogs2012

    • Author(s)
      Yasuda, K, Ikushiro, S, Sakaki, T
    • Journal Title

      J. Steroid Biochem. Mol. Biol

      Volume: 133 Pages: 84-92

    • DOI

      DOI: 10.1016/j.jsbmb.2012.09.006

    • Peer Reviewed
  • [Journal Article] Structural basis of species differences between human and experimental animal CYP1A1s in metabolism of 3,3`,4,4`2011

    • Author(s)
      Yamazaki K, Sakaki T
    • Journal Title

      5-pentachlorobiphenyl,Journal of Biochemistry

      Volume: 149 Pages: 487-494

    • Peer Reviewed
  • [Journal Article] Metabolism of the c-Fos/Activator Protein-1 Inhibitor T-5224 by Multiple Human UDP-Glucuronosyltransferase Isoforms2011

    • Author(s)
      Uchihashi, S.,Ikushiro, S.,Sakaki, T.
    • Journal Title

      Drug Metabolism and Disposition

      Volume: 39 Pages: 803-813

    • DOI

      DOI:10.1124/dmd.110.037952

    • Peer Reviewed
  • [Journal Article] Metabolism of sesamin by cytochromes P450 in human liver microsomes2010

    • Author(s)
      Yasuda K, Ikushiro S, Kamakura M, Ohta M, and Sakaki T
    • Journal Title

      Drug Metabolism and Disposition

      Volume: 38 Pages: 2117-2123

    • Peer Reviewed
  • [Presentation] ヒト主要P450分子種によるモデル化合物Tebufenozideの代謝物同定およびIn Silico予測2012

    • Author(s)
      矢川勝太,赤松美紀
    • Organizer
      第40回構造活性相関シンポジウム
    • Place of Presentation
      愛知,岡崎
    • Year and Date
      2012-11-29
  • [Presentation] Difference of Substrate Recognition Between Human CYP Isozymes Based on Metabolite Identification and In Silico Prediction2012

    • Author(s)
      Yagawa, M., Akamatsu, M
    • Organizer
      第9回薬物の分子設計と開発に関する日中合同シンポジウム
    • Place of Presentation
      中華人民共和国桂林市.
    • Year and Date
      2012-09-22
  • [Presentation] Difference of substrate recognition between human CYP3A4 and CYP2C19 based on metabolite identification and in silico prediction2012

    • Author(s)
      城谷直紀、榊利之、生城真一、赤松美紀
    • Organizer
      第18回ヨーロッパ構造活性相関シンポジウム
    • Place of Presentation
      ギリシャ、ロードス島,ロードスパレス国際コンベンションセンター.
    • Year and Date
      2012-09-20
  • [Presentation] 代謝・排泄に関する分子モデリング2012

    • Author(s)
      赤松美紀
    • Organizer
      第305回細胞工学研究会講演会(招待講演)
    • Place of Presentation
      島根,島根大学
    • Year and Date
      2012-01-20
  • [Presentation] セサミンおよびエピセサミンのヒト体内における代謝予測2011

    • Author(s)
      安田佳織、生城真一、榊利之
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都,国立京都国際会館
    • Year and Date
      2011-09-21
  • [Presentation] ラットおよびヒトCYP1A1によるポリ塩化ビフェニルの代謝と3次元構造の比較2011

    • Author(s)
      薮未来、榊利之
    • Organizer
      第20回環境化学討論会
    • Place of Presentation
      熊本,熊本県立大学
    • Year and Date
      2011-07-16
  • [Presentation] ヒトCYP3A4およびCYP2C19のTebufenozide代謝における立体選択性の差異2011

    • Author(s)
      城谷直紀、榊利之、生城真一、赤松美紀
    • Organizer
      日本農薬学会第36回大会
    • Place of Presentation
      日本農薬学会第36回大会
    • Year and Date
      2011-03-17
  • [Presentation] ラットおよびヒトCYP1A1による3,3',4,4'-テトラクロロビフェニルの代謝能の比較2010

    • Author(s)
      薮未来、榊利之
    • Organizer
      日本分子生物学会・日本生化学会合同会議
    • Place of Presentation
      兵庫,神戸
    • Year and Date
      2010-12-08
  • [Presentation] 代謝物同定およびin silico予測を用いたCYP3A4とCYP2C19における基質認識機構の差異2010

    • Author(s)
      城谷直紀、榊利之、生城真一、赤松美紀
    • Organizer
      第38回構造活性相関シンポジウム
    • Place of Presentation
      徳島,徳島大学
    • Year and Date
      2010-10-30
  • [Presentation] ヒト代謝酵素CYP3A4とCYP2C19の基質認識機構における差異-Tebufenozideを例として2010

    • Author(s)
      城谷直紀、榊利之、生城真一、赤松美紀
    • Organizer
      日本農薬学会第35回大会
    • Place of Presentation
      札幌,北海道大学
    • Year and Date
      2010-05-29
  • [Remarks] 研究内容についてのWebページ

    • URL

      http://www.fsao.kais.kyoto-u.ac.jp/cas/index.php?%E8%B5%A4%E6%9D%BE%E3%80%80%E7%BE%8E%E7%B4%80

URL: 

Published: 2014-08-29  

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